Wall clock time and date at job start Mon Mar 30 2020 01:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47208 * 2 1 4 4 C 1.50706 * 109.46833 * 119.99103 * 2 1 3 5 5 H 1.08003 * 119.99348 * 119.99779 * 4 2 1 6 6 C 1.37878 * 120.00327 * 300.00367 * 4 2 1 7 7 N 1.31515 * 119.99572 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47305 * 269.99922 * 8 6 4 10 10 H 1.48500 * 109.47059 * 30.00155 * 8 6 4 11 11 H 1.48502 * 109.46804 * 150.00165 * 8 6 4 12 12 N 1.46493 * 109.47487 * 239.99258 * 2 1 3 13 13 C 1.46505 * 119.99915 * 300.00682 * 12 2 1 14 14 C 1.34780 * 120.00223 * 120.00121 * 12 2 1 15 15 O 1.21597 * 119.99467 * 6.48942 * 14 12 2 16 16 C 1.47499 * 119.99862 * 186.48644 * 14 12 2 17 17 C 1.41190 * 126.37676 * 7.81971 * 16 14 12 18 18 C 1.37996 * 106.87020 * 179.89793 * 17 16 14 19 19 C 1.41381 * 131.99039 * 180.08880 * 18 17 16 20 20 C 1.35735 * 119.33297 * 180.29721 * 19 18 17 21 21 C 1.40830 * 119.72406 * 0.02562 * 20 19 18 22 22 C 1.34538 * 120.57996 * 359.97438 * 21 20 19 23 23 N 1.37447 * 120.74331 * 0.02562 * 22 21 20 24 24 C 1.35125 * 131.28310 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47487 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47069 * 300.00940 * 1 2 3 27 27 H 1.09008 * 109.46237 * 60.00438 * 1 2 3 28 28 H 0.96998 * 119.99677 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47333 * 95.88857 * 13 12 2 30 30 H 1.09002 * 109.46567 * 215.89018 * 13 12 2 31 31 H 1.08999 * 109.46875 * 335.88781 * 13 12 2 32 32 H 1.08004 * 126.56302 * 0.02562 * 17 16 14 33 33 H 1.08004 * 120.33443 * 0.32709 * 19 18 17 34 34 H 1.08005 * 120.14065 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.71288 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.63274 * 180.02562 * 22 21 20 37 37 H 1.08002 * 125.61571 * 359.95497 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4829 7 7 0.9434 0.8305 2.6033 8 14 2.3212 -1.1200 4.0082 9 1 1.3426 -2.1612 4.4121 10 1 3.6292 -1.7579 3.7125 11 1 2.4863 -0.1408 5.1124 12 7 2.0184 -0.6907 -1.1960 13 6 1.6644 -2.0933 -1.4277 14 6 2.7933 -0.0358 -2.0832 15 8 3.1846 1.0884 -1.8352 16 6 3.1668 -0.6830 -3.3550 17 6 2.6694 -1.9087 -3.8485 18 6 3.2845 -2.1303 -5.0638 19 6 3.1761 -3.1836 -6.0007 20 6 3.9210 -3.1442 -7.1346 21 6 4.7895 -2.0591 -7.3622 22 6 4.8870 -1.0608 -6.4657 23 7 4.1427 -1.0788 -5.3103 24 6 4.0723 -0.2056 -4.2815 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.7087 1.1617 3.4842 29 1 0.7974 -2.1452 -2.0862 30 1 2.5052 -2.6081 -1.8927 31 1 1.4274 -2.5701 -0.4766 32 1 1.9445 -2.5491 -3.3680 33 1 2.5068 -4.0109 -5.8162 34 1 3.8481 -3.9416 -7.8594 35 1 5.3824 -2.0282 -8.2643 36 1 5.5576 -0.2358 -6.6559 37 1 4.6325 0.7139 -4.1975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155807944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:32 Heat of formation + Delta-G solvation = 38.756949 kcal Electronic energy + Delta-G solvation = -20352.284584 eV Core-core repulsion = 17288.688489 eV Total energy + Delta-G solvation = -3063.596095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.17010 -40.51383 -37.35854 -37.08556 -34.94395 -33.91742 -31.80597 -30.41864 -28.82766 -27.65773 -27.29905 -25.33614 -23.77058 -22.62712 -22.00878 -19.99729 -18.48663 -18.44616 -17.63804 -17.38147 -16.91382 -16.52974 -16.13729 -15.81972 -15.72636 -15.32017 -14.85046 -14.47572 -14.20161 -13.91930 -13.67495 -13.50605 -12.99333 -12.85312 -12.73408 -12.65739 -12.45824 -12.23061 -12.18120 -12.12008 -12.03728 -11.37005 -11.17521 -10.77103 -10.49886 -9.62951 -9.26060 -8.29551 -8.13517 -6.30210 -0.11865 0.41387 1.17772 1.41696 1.43662 1.53875 1.70508 2.34430 2.54587 2.57877 2.65728 3.14018 3.65223 3.75918 3.93873 4.07202 4.22685 4.33754 4.43130 4.52269 4.61897 4.70893 4.77872 4.90579 4.92549 4.93422 5.03213 5.08758 5.28012 5.36317 5.46038 5.48236 5.60479 5.68147 5.74736 5.94912 6.07063 6.17435 6.32024 6.76976 6.84478 7.32283 7.49272 8.91133 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035845 B = 0.004100 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.947236 B = 6827.373804 C = 6979.982886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.591 5.591 13 C 0.075 3.925 14 C 0.562 3.438 15 O -0.611 6.611 16 C -0.185 4.185 17 C -0.192 4.192 18 C 0.020 3.980 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.127 4.127 22 C 0.017 3.983 23 N -0.342 5.342 24 C -0.005 4.005 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.129 -11.714 -21.347 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.320 5.320 13 C -0.067 4.067 14 C 0.352 3.648 15 O -0.496 6.496 16 C -0.193 4.193 17 C -0.215 4.215 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.100 4.100 23 N -0.005 5.005 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.200 0.800 33 H 0.183 0.817 34 H 0.185 0.815 35 H 0.200 0.800 36 H 0.201 0.799 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.383 -10.963 -21.231 24.493 hybrid contribution 0.201 0.409 1.343 1.418 sum 5.584 -10.554 -19.888 23.197 Atomic orbital electron populations 1.21870 0.96787 1.00280 0.99955 1.18595 0.91765 0.92188 0.81574 0.97426 1.21566 1.31949 1.13067 0.91171 0.92271 1.25755 0.95043 0.95640 1.02021 1.70027 1.37341 1.23832 1.24470 0.85415 0.78804 0.78279 0.78263 1.18973 1.19758 1.21003 1.48006 1.48582 1.13230 1.22150 1.22348 1.01067 0.80787 1.02520 1.18124 0.78126 0.84836 0.83706 1.90658 1.57301 1.22073 1.79526 1.19548 1.04570 0.99269 0.95911 1.22191 1.05980 0.97908 0.95408 1.19342 0.98402 0.92403 0.98367 1.21011 1.00942 0.96566 0.92615 1.21446 0.95855 0.99511 0.97652 1.21273 1.00395 0.92937 1.00064 1.22357 0.98587 1.03671 0.85405 1.41500 1.28252 1.16400 1.14390 1.21932 1.05347 0.98041 0.88591 0.93245 0.91148 0.96229 0.92578 0.91004 0.89231 0.91032 0.80045 0.81655 0.81476 0.80025 0.79907 0.80251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.97 71.98 0.65 -5.97 16 2 C 0.26 14.50 2.62 44.25 0.12 14.62 16 3 H 0.01 0.51 6.92 -2.39 -0.02 0.50 16 4 C -0.54 -30.79 7.95 25.60 0.20 -30.59 16 5 H 0.06 3.30 7.43 -2.91 -0.02 3.28 16 6 C 0.01 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 8 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 N -0.59 -27.91 2.75 -830.59 -2.29 -30.20 16 13 C 0.07 2.64 7.58 127.77 0.97 3.61 16 14 C 0.56 27.12 7.66 86.68 0.66 27.78 16 15 O -0.61 -34.85 16.26 -4.02 -0.07 -34.91 16 16 C -0.19 -6.99 5.92 -20.15 -0.12 -7.11 16 17 C -0.19 -5.72 8.78 22.94 0.20 -5.52 16 18 C 0.02 0.50 6.70 38.90 0.26 0.76 16 19 C -0.09 -1.56 10.11 22.46 0.23 -1.33 16 20 C -0.12 -1.47 10.07 22.32 0.22 -1.25 16 21 C -0.13 -1.44 9.97 22.06 0.22 -1.22 16 22 C 0.02 0.28 10.89 82.97 0.90 1.19 16 23 N -0.34 -8.76 2.92 -345.06 -1.01 -9.76 16 24 C 0.00 -0.16 11.38 84.14 0.96 0.80 16 25 H 0.05 2.26 7.67 -2.39 -0.02 2.24 16 26 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 27 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.07 2.13 7.28 -2.39 -0.02 2.12 16 30 H 0.09 2.76 5.42 -2.39 -0.01 2.75 16 31 H 0.07 2.63 7.12 -2.39 -0.02 2.61 16 32 H 0.18 4.62 4.57 -2.91 -0.01 4.60 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.18 5.49 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -78.47 307.23 5.91 -72.56 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.08 Total: 13.11 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.92 Total: -2.94 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.05 Total: -94.17 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.07 Total: -34.91 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -78.47 5.91 -72.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155807944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.313 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds