Wall clock time and date at job start Mon Mar 30 2020 01:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47311 * 2 1 4 4 C 1.50700 * 109.47330 * 240.00011 * 2 1 3 5 5 H 1.08007 * 120.00013 * 270.97022 * 4 2 1 6 6 C 1.37871 * 120.00131 * 90.97549 * 4 2 1 7 7 N 1.31521 * 119.99865 * 176.73033 * 6 4 2 8 8 Si 1.86797 * 120.00134 * 356.73015 * 6 4 2 9 9 H 1.48501 * 109.47118 * 84.88112 * 8 6 4 10 10 H 1.48504 * 109.47233 * 204.88333 * 8 6 4 11 11 H 1.48495 * 109.47122 * 324.88149 * 8 6 4 12 12 N 1.46500 * 109.47342 * 119.99755 * 2 1 3 13 13 C 1.46500 * 120.00238 * 60.00203 * 12 2 1 14 14 C 1.34784 * 120.00077 * 240.00556 * 12 2 1 15 15 O 1.21589 * 119.99734 * 7.98966 * 14 12 2 16 16 C 1.47497 * 119.99864 * 187.99220 * 14 12 2 17 17 C 1.41201 * 126.37154 * 6.54777 * 16 14 12 18 18 C 1.37994 * 106.86075 * 179.84093 * 17 16 14 19 19 C 1.41390 * 131.98308 * 180.11308 * 18 17 16 20 20 C 1.35746 * 119.33217 * 180.34369 * 19 18 17 21 21 C 1.40825 * 119.71895 * 359.97438 * 20 19 18 22 22 C 1.34538 * 120.58323 * 359.97438 * 21 20 19 23 23 N 1.37434 * 120.74304 * 0.02562 * 22 21 20 24 24 C 1.35128 * 131.28355 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47162 * 53.56253 * 1 2 3 26 26 H 1.08996 * 109.47598 * 293.56090 * 1 2 3 27 27 H 1.09005 * 109.46899 * 173.56004 * 1 2 3 28 28 H 0.97005 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47212 * 96.13003 * 13 12 2 30 30 H 1.08996 * 109.47102 * 216.13755 * 13 12 2 31 31 H 1.09002 * 109.46916 * 336.13432 * 13 12 2 32 32 H 1.07999 * 126.56929 * 359.97438 * 17 16 14 33 33 H 1.07996 * 120.33519 * 0.35987 * 19 18 17 34 34 H 1.07994 * 120.14085 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.70609 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.62899 * 180.02562 * 22 21 20 37 37 H 1.08006 * 125.61612 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1974 -1.7775 -1.2083 6 6 2.2813 0.0019 -2.3844 7 7 2.7805 -0.6067 -3.4380 8 14 1.9097 1.8313 -2.4513 9 1 3.0609 2.5907 -1.9006 10 1 1.6769 2.2380 -3.8605 11 1 0.6958 2.1196 -1.6460 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 2.9678 1.1625 1.9699 16 6 3.4292 -0.7718 3.1919 17 6 3.4256 -2.1714 3.3785 18 6 4.1374 -2.4231 4.5336 19 6 4.4599 -3.6262 5.2026 20 6 5.1839 -3.5757 6.3497 21 6 5.6033 -2.3305 6.8564 22 6 5.2931 -1.1902 6.2132 23 7 4.5612 -1.2163 5.0503 24 6 4.1361 -0.2205 4.2419 25 1 -0.3633 0.6104 -0.8268 26 1 -0.3634 0.4108 0.9419 27 1 -0.3633 -1.0212 -0.1153 28 1 2.9553 -0.1056 -4.2500 29 1 2.4686 -2.7350 1.0682 30 1 1.5171 -2.2590 2.4953 31 1 0.7444 -2.3289 0.8933 32 1 2.9575 -2.9046 2.7385 33 1 4.1338 -4.5758 4.8048 34 1 5.4379 -4.4867 6.8712 35 1 6.1796 -2.2906 7.7688 36 1 5.6230 -0.2437 6.6153 37 1 4.3176 0.8334 4.3933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155808059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:35 Heat of formation + Delta-G solvation = 59.783080 kcal Electronic energy + Delta-G solvation = -20441.057092 eV Core-core repulsion = 17378.372758 eV Total energy + Delta-G solvation = -3062.684334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16292 -38.96117 -36.39762 -35.36280 -33.32241 -32.48726 -30.74451 -29.39242 -27.81950 -26.29920 -25.18038 -24.17415 -22.62576 -21.62076 -20.29698 -18.46713 -17.44866 -17.04811 -16.45360 -16.10116 -15.45601 -15.41697 -14.75124 -14.46460 -14.38225 -14.16502 -13.53326 -12.90734 -12.71490 -12.47357 -12.25994 -12.20268 -11.91436 -11.74155 -11.51271 -11.35518 -11.11221 -10.98765 -10.48520 -10.41330 -10.27251 -9.78651 -9.25126 -9.05347 -8.59186 -8.46669 -7.59829 -7.34601 -6.12011 -4.13348 0.71870 1.34596 2.40555 2.66949 3.34413 3.41220 3.44647 3.46716 3.94807 4.08929 4.42056 4.43432 4.68373 4.75731 4.92840 5.02500 5.25695 5.33955 5.50443 5.54287 5.74167 5.79664 5.88912 6.03133 6.08245 6.21189 6.27515 6.31858 6.42636 6.46897 6.64366 6.79462 6.87799 6.99210 7.16568 7.26811 7.55827 7.69116 8.23378 8.55864 8.89915 9.03723 9.50776 11.00190 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004499 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.760824 B = 6221.621922 C = 6450.353755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.227 3.773 3 H 0.061 0.939 4 C -0.524 4.524 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.579 5.579 13 C 0.078 3.922 14 C 0.575 3.425 15 O -0.562 6.562 16 C -0.154 4.154 17 C -0.172 4.172 18 C 0.017 3.983 19 C -0.070 4.070 20 C -0.143 4.143 21 C -0.142 4.142 22 C 0.043 3.957 23 N -0.344 5.344 24 C 0.010 3.990 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.171 0.829 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -5.774 20.023 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.563 4.563 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.309 5.309 13 C -0.066 4.066 14 C 0.363 3.637 15 O -0.443 6.443 16 C -0.161 4.161 17 C -0.196 4.196 18 C -0.087 4.087 19 C -0.089 4.089 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.076 4.076 23 N -0.008 5.008 24 C -0.123 4.123 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.902 -5.034 19.916 20.747 hybrid contribution 0.021 0.839 -0.185 0.859 sum 2.924 -4.195 19.732 20.383 Atomic orbital electron populations 1.22315 0.98494 1.00977 0.99285 1.19230 0.90709 0.94748 0.82678 0.92063 1.21145 1.44882 0.96599 0.93642 0.90377 1.24922 0.93700 0.98279 0.95580 1.69897 1.43035 1.36743 1.03360 0.86981 0.80198 0.85982 0.77074 1.19707 1.21357 1.18423 1.47966 1.48675 1.11742 1.22517 1.22093 1.01032 0.83163 1.00271 1.17406 0.78885 0.86214 0.81164 1.90696 1.63476 1.14565 1.75514 1.19849 1.04871 0.93730 0.97652 1.22180 1.04357 0.95752 0.97316 1.18922 1.05943 0.85389 0.98416 1.20664 0.97562 0.96021 0.94656 1.20870 1.00581 0.97777 0.97124 1.20656 1.02783 0.91523 1.01223 1.21641 0.97753 1.00892 0.87269 1.41342 1.34864 1.07936 1.16694 1.22008 1.04341 0.93308 0.92648 0.92439 0.95352 0.93055 0.92462 0.92674 0.91529 0.91009 0.81210 0.84054 0.85150 0.84032 0.82394 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.88 37.15 0.33 -2.96 16 2 C 0.23 5.63 2.20 -69.09 -0.15 5.48 16 3 H 0.06 1.67 4.67 -51.93 -0.24 1.42 16 4 C -0.52 -14.67 8.83 -34.44 -0.30 -14.97 16 5 H 0.08 2.31 7.64 -52.48 -0.40 1.91 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 8 Si 0.87 22.19 26.36 -169.99 -4.48 17.71 16 9 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.28 5.89 56.52 0.33 -5.95 16 12 N -0.58 -12.70 2.75 -176.51 -0.49 -13.19 16 13 C 0.08 1.34 7.67 59.85 0.46 1.80 16 14 C 0.58 12.73 7.65 -12.48 -0.10 12.64 16 15 O -0.56 -14.22 16.26 5.29 0.09 -14.13 16 16 C -0.15 -2.77 5.93 -105.07 -0.62 -3.39 16 17 C -0.17 -2.63 8.80 -38.55 -0.34 -2.97 16 18 C 0.02 0.23 6.70 -84.01 -0.56 -0.34 16 19 C -0.07 -0.74 10.11 -39.28 -0.40 -1.14 16 20 C -0.14 -1.26 10.07 -39.50 -0.40 -1.65 16 21 C -0.14 -1.18 9.97 -39.91 -0.40 -1.58 16 22 C 0.04 0.42 10.89 -16.35 -0.18 0.25 16 23 N -0.34 -4.63 2.92 -60.42 -0.18 -4.81 16 24 C 0.01 0.16 11.38 -16.17 -0.18 -0.02 16 25 H 0.06 1.26 6.41 -51.93 -0.33 0.92 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.02 6.92 -51.93 -0.36 0.67 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.05 0.93 7.21 -51.93 -0.37 0.56 16 30 H 0.07 0.96 5.54 -51.93 -0.29 0.67 16 31 H 0.07 1.20 6.57 -51.93 -0.34 0.86 16 32 H 0.17 2.32 4.54 -52.49 -0.24 2.08 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.18 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -34.75 303.14 -6.97 -41.72 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.32 Total: 1.20 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.94 Total: -6.67 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.11 Total: -44.40 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.48 Total: 17.71 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.75 -6.97 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155808059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.507 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds