Wall clock time and date at job start Mon Mar 30 2020 01:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47311 * 2 1 4 4 C 1.50700 * 109.47330 * 240.00011 * 2 1 3 5 5 H 1.08007 * 120.00013 * 270.97022 * 4 2 1 6 6 C 1.37871 * 120.00131 * 90.97549 * 4 2 1 7 7 N 1.31521 * 119.99865 * 176.73033 * 6 4 2 8 8 Si 1.86797 * 120.00134 * 356.73015 * 6 4 2 9 9 H 1.48501 * 109.47118 * 84.88112 * 8 6 4 10 10 H 1.48504 * 109.47233 * 204.88333 * 8 6 4 11 11 H 1.48495 * 109.47122 * 324.88149 * 8 6 4 12 12 N 1.46500 * 109.47342 * 119.99755 * 2 1 3 13 13 C 1.46500 * 120.00238 * 60.00203 * 12 2 1 14 14 C 1.34784 * 120.00077 * 240.00556 * 12 2 1 15 15 O 1.21589 * 119.99734 * 7.98966 * 14 12 2 16 16 C 1.47497 * 119.99864 * 187.99220 * 14 12 2 17 17 C 1.41201 * 126.37154 * 6.54777 * 16 14 12 18 18 C 1.37994 * 106.86075 * 179.84093 * 17 16 14 19 19 C 1.41390 * 131.98308 * 180.11308 * 18 17 16 20 20 C 1.35746 * 119.33217 * 180.34369 * 19 18 17 21 21 C 1.40825 * 119.71895 * 359.97438 * 20 19 18 22 22 C 1.34538 * 120.58323 * 359.97438 * 21 20 19 23 23 N 1.37434 * 120.74304 * 0.02562 * 22 21 20 24 24 C 1.35128 * 131.28355 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47162 * 53.56253 * 1 2 3 26 26 H 1.08996 * 109.47598 * 293.56090 * 1 2 3 27 27 H 1.09005 * 109.46899 * 173.56004 * 1 2 3 28 28 H 0.97005 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47212 * 96.13003 * 13 12 2 30 30 H 1.08996 * 109.47102 * 216.13755 * 13 12 2 31 31 H 1.09002 * 109.46916 * 336.13432 * 13 12 2 32 32 H 1.07999 * 126.56929 * 359.97438 * 17 16 14 33 33 H 1.07996 * 120.33519 * 0.35987 * 19 18 17 34 34 H 1.07994 * 120.14085 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.70609 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.62899 * 180.02562 * 22 21 20 37 37 H 1.08006 * 125.61612 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1974 -1.7775 -1.2083 6 6 2.2813 0.0019 -2.3844 7 7 2.7805 -0.6067 -3.4380 8 14 1.9097 1.8313 -2.4513 9 1 3.0609 2.5907 -1.9006 10 1 1.6769 2.2380 -3.8605 11 1 0.6958 2.1196 -1.6460 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 2.9678 1.1625 1.9699 16 6 3.4292 -0.7718 3.1919 17 6 3.4256 -2.1714 3.3785 18 6 4.1374 -2.4231 4.5336 19 6 4.4599 -3.6262 5.2026 20 6 5.1839 -3.5757 6.3497 21 6 5.6033 -2.3305 6.8564 22 6 5.2931 -1.1902 6.2132 23 7 4.5612 -1.2163 5.0503 24 6 4.1361 -0.2205 4.2419 25 1 -0.3633 0.6104 -0.8268 26 1 -0.3634 0.4108 0.9419 27 1 -0.3633 -1.0212 -0.1153 28 1 2.9553 -0.1056 -4.2500 29 1 2.4686 -2.7350 1.0682 30 1 1.5171 -2.2590 2.4953 31 1 0.7444 -2.3289 0.8933 32 1 2.9575 -2.9046 2.7385 33 1 4.1338 -4.5758 4.8048 34 1 5.4379 -4.4867 6.8712 35 1 6.1796 -2.2906 7.7688 36 1 5.6230 -0.2437 6.6153 37 1 4.3176 0.8334 4.3933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155808059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:35 Heat of formation + Delta-G solvation = 37.806168 kcal Electronic energy + Delta-G solvation = -20442.010082 eV Core-core repulsion = 17378.372758 eV Total energy + Delta-G solvation = -3063.637324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.17842 -40.59220 -37.38802 -37.11933 -34.85562 -33.98904 -32.38393 -30.60828 -28.85490 -27.74742 -27.22736 -25.36346 -23.75742 -22.63921 -21.90135 -20.00244 -19.07661 -18.43918 -17.69737 -17.38830 -16.90865 -16.61972 -16.13513 -15.83680 -15.70515 -15.32507 -14.95414 -14.57121 -14.34056 -14.11291 -13.91651 -13.63325 -13.28110 -13.14723 -12.83273 -12.70084 -12.45098 -12.23178 -12.14999 -12.07015 -11.78718 -11.36747 -11.26728 -10.84679 -10.78606 -9.64456 -9.28507 -8.36100 -8.30300 -6.40036 -0.13109 0.40689 1.15125 1.28804 1.34338 1.42171 1.69530 2.28665 2.37126 2.54462 2.63991 3.05611 3.64046 3.74254 3.93380 4.05696 4.21553 4.32157 4.37136 4.45185 4.54714 4.61253 4.66921 4.75175 4.79945 4.89422 4.93054 4.99787 5.12380 5.27526 5.33470 5.39759 5.45727 5.55067 5.69592 5.83008 5.94196 6.19398 6.31865 6.63808 6.75469 7.23207 7.37916 8.79362 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004499 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.760824 B = 6221.621922 C = 6450.353755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.226 3.774 3 H 0.035 0.965 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.923 3.077 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.240 1.240 12 N -0.589 5.589 13 C 0.078 3.922 14 C 0.567 3.433 15 O -0.608 6.608 16 C -0.188 4.188 17 C -0.194 4.194 18 C 0.020 3.980 19 C -0.095 4.095 20 C -0.124 4.124 21 C -0.128 4.128 22 C 0.018 3.982 23 N -0.342 5.342 24 C -0.001 4.001 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -7.053 23.419 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.124 3.876 3 H 0.053 0.947 4 C -0.559 4.559 5 H 0.071 0.929 6 C -0.172 4.172 7 N -0.575 5.575 8 Si 0.748 3.252 9 H -0.213 1.213 10 H -0.200 1.200 11 H -0.163 1.163 12 N -0.317 5.317 13 C -0.064 4.064 14 C 0.358 3.642 15 O -0.492 6.492 16 C -0.195 4.195 17 C -0.217 4.217 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.099 4.099 23 N -0.006 5.006 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.185 0.815 35 H 0.200 0.800 36 H 0.203 0.797 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.253 -6.349 23.341 24.407 hybrid contribution 0.076 1.048 -0.974 1.432 sum 3.329 -5.301 22.367 23.226 Atomic orbital electron populations 1.22164 0.95766 1.02101 1.00136 1.19052 0.92713 0.93202 0.82656 0.94675 1.21354 1.44024 0.95615 0.94934 0.92935 1.25629 0.93959 1.02201 0.95430 1.70002 1.44998 1.38375 1.04114 0.86149 0.80201 0.81123 0.77755 1.21289 1.20045 1.16309 1.47957 1.48802 1.13380 1.21609 1.22299 1.01031 0.80601 1.02432 1.18046 0.78283 0.85986 0.81933 1.90639 1.65038 1.16588 1.76939 1.19550 1.07243 0.95000 0.97746 1.22193 1.06141 0.94590 0.98755 1.19309 1.04751 0.86650 0.97814 1.21006 0.99036 0.95605 0.95681 1.21442 0.97717 0.99472 0.95786 1.21275 1.01121 0.90593 1.01734 1.22365 0.97878 1.03267 0.86378 1.41507 1.34548 1.07250 1.17272 1.21967 1.04737 0.94014 0.92843 0.92739 0.93534 0.91557 0.92274 0.92762 0.88412 0.90561 0.80441 0.81900 0.81543 0.79978 0.79717 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.88 71.98 0.64 -5.46 16 2 C 0.23 11.42 2.20 44.24 0.10 11.51 16 3 H 0.04 1.96 4.67 -2.38 -0.01 1.95 16 4 C -0.52 -29.97 8.83 25.60 0.23 -29.75 16 5 H 0.05 3.22 7.64 -2.91 -0.02 3.20 16 6 C 0.03 1.61 5.47 84.65 0.46 2.08 16 7 N -0.94 -58.57 13.96 21.45 0.30 -58.28 16 8 Si 0.92 46.74 26.36 68.60 1.81 48.55 16 9 H -0.29 -15.10 7.11 99.48 0.71 -14.40 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.24 -11.24 5.89 99.48 0.59 -10.66 16 12 N -0.59 -26.42 2.75 -830.61 -2.29 -28.70 16 13 C 0.08 2.70 7.67 127.77 0.98 3.68 16 14 C 0.57 26.07 7.65 86.68 0.66 26.73 16 15 O -0.61 -32.25 16.26 -4.00 -0.07 -32.32 16 16 C -0.19 -6.95 5.93 -20.15 -0.12 -7.06 16 17 C -0.19 -5.89 8.80 22.94 0.20 -5.69 16 18 C 0.02 0.51 6.70 38.90 0.26 0.77 16 19 C -0.09 -1.67 10.11 22.47 0.23 -1.44 16 20 C -0.12 -1.53 10.07 22.32 0.22 -1.30 16 21 C -0.13 -1.46 9.97 22.06 0.22 -1.24 16 22 C 0.02 0.30 10.89 82.97 0.90 1.20 16 23 N -0.34 -8.68 2.92 -345.07 -1.01 -9.68 16 24 C 0.00 -0.04 11.38 84.14 0.96 0.91 16 25 H 0.05 2.32 6.41 -2.39 -0.02 2.31 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 2.59 6.92 -2.38 -0.02 2.57 16 28 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 29 H 0.05 1.87 7.21 -2.39 -0.02 1.85 16 30 H 0.10 2.76 5.54 -2.39 -0.01 2.75 16 31 H 0.08 2.52 6.57 -2.39 -0.02 2.50 16 32 H 0.18 4.80 4.54 -2.91 -0.01 4.79 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.18 5.28 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -79.35 303.14 5.66 -73.69 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.97 Total: 11.79 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.94 Total: -5.05 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -2.99 Total: -96.66 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.07 Total: -32.32 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.81 Total: 48.55 kcal Total: -79.35 5.66 -73.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155808059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.500 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds