Wall clock time and date at job start Mon Mar 30 2020 01:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47250 * 241.40077 * 3 2 1 5 5 C 1.34776 * 120.00209 * 180.02562 * 4 3 2 6 6 O 1.21581 * 120.00148 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00299 * 175.08568 * 7 5 4 9 9 H 1.08998 * 109.46653 * 38.54071 * 8 7 5 10 10 C 1.52996 * 109.47184 * 158.54251 * 8 7 5 11 11 C 1.50694 * 109.47321 * 294.53716 * 10 8 7 12 12 H 1.07999 * 119.99895 * 354.99098 * 11 10 8 13 13 C 1.37880 * 120.00046 * 174.98800 * 11 10 8 14 14 N 1.31512 * 120.00004 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00111 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47176 * 59.99710 * 15 13 11 17 17 H 1.48497 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47081 * 300.00229 * 15 13 11 19 19 C 1.50703 * 109.46985 * 278.54635 * 8 7 5 20 20 C 1.38241 * 119.99920 * 319.72216 * 19 8 7 21 21 C 1.38230 * 119.99708 * 179.79169 * 20 19 8 22 22 C 1.38243 * 120.00182 * 0.44115 * 21 20 19 23 23 C 1.38233 * 119.99845 * 359.81069 * 22 21 20 24 24 C 1.38230 * 119.99818 * 139.99987 * 19 8 7 25 25 H 4.40641 * 5.51330 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47180 * 121.40342 * 3 2 1 27 27 H 1.09003 * 109.47331 * 1.40592 * 3 2 1 28 28 H 0.97004 * 119.99743 * 0.27594 * 4 3 2 29 29 H 0.97007 * 120.00025 * 355.09105 * 7 5 4 30 30 H 1.08998 * 109.47430 * 54.54314 * 10 8 7 31 31 H 1.09001 * 109.46898 * 174.53440 * 10 8 7 32 32 H 0.97000 * 119.99845 * 179.97438 * 14 13 11 33 33 H 1.07994 * 119.99970 * 359.97438 * 20 19 8 34 34 H 1.07998 * 120.00157 * 180.27444 * 21 20 19 35 35 H 1.07999 * 119.99854 * 179.83335 * 22 21 20 36 36 H 1.07998 * 119.99918 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.00569 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.6620 1.2126 5 6 4.4591 0.7810 1.4286 6 8 5.2494 0.3398 0.6169 7 7 4.9081 1.3899 2.5440 8 6 6.3440 1.4245 2.8323 9 1 6.8970 1.5761 1.9053 10 6 6.6428 2.5729 3.7980 11 6 6.3502 3.8873 3.1214 12 1 6.0653 3.9068 2.0799 13 6 6.4461 5.0649 3.8321 14 7 6.7935 5.0412 5.1003 15 14 6.0828 6.6941 2.9936 16 1 4.6854 6.6913 2.4908 17 1 6.2568 7.8017 3.9673 18 1 7.0178 6.8845 1.8557 19 6 6.7622 0.1193 3.4590 20 6 5.9460 -0.4920 4.3924 21 6 6.3276 -1.6913 4.9641 22 6 7.5296 -2.2748 4.6092 23 6 8.3481 -1.6608 3.6797 24 6 7.9645 -0.4635 3.1048 25 1 -1.0501 0.0001 -0.0003 26 1 3.0091 0.5363 -0.8771 27 1 3.0099 -1.0265 -0.0252 28 1 2.5035 1.0111 1.8619 29 1 4.2804 1.8051 3.1561 30 1 6.0173 2.4738 4.6851 31 1 7.6928 2.5396 4.0884 32 1 6.8614 5.8697 5.6001 33 1 5.0090 -0.0341 4.6727 34 1 5.6880 -2.1712 5.6900 35 1 7.8289 -3.2105 5.0578 36 1 9.2873 -2.1164 3.4027 37 1 8.6040 0.0161 2.3786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158974061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:15 Heat of formation + Delta-G solvation = 43.616834 kcal Electronic energy + Delta-G solvation = -20037.748264 eV Core-core repulsion = 16974.362909 eV Total energy + Delta-G solvation = -3063.385355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79933 -38.59226 -35.75636 -34.77675 -32.82217 -32.45684 -30.87864 -30.40046 -28.80438 -26.77531 -24.68995 -22.25633 -21.92670 -20.81611 -19.82147 -18.93987 -17.57633 -16.79558 -16.16338 -15.90088 -15.32741 -14.74659 -14.68229 -14.55772 -14.13429 -13.59249 -13.50759 -13.11137 -12.96786 -12.65368 -12.46619 -12.08463 -11.50315 -11.12657 -10.94708 -10.87037 -10.70783 -10.64829 -10.54626 -10.44367 -9.73439 -9.68331 -9.29819 -8.93963 -8.50493 -8.44358 -8.29928 -8.13280 -6.08135 -4.11303 1.81281 1.84420 2.30343 2.62937 3.29227 3.34323 3.37547 3.43888 3.68519 4.14418 4.25469 4.40697 4.79674 5.28208 5.29889 5.31374 5.40815 5.53489 5.54841 5.60424 5.71236 5.94970 5.98210 6.19175 6.39024 6.46256 6.58358 6.64467 6.88275 6.89014 6.98348 7.13867 7.31730 7.36305 7.44708 7.53019 7.69235 7.88920 8.27214 8.51126 8.94586 9.07761 9.53511 11.02296 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.007193 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.322538 B = 3891.634859 C = 6248.536851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.199 4.199 3 C 0.250 3.750 4 N -0.752 5.752 5 C 0.706 3.294 6 O -0.596 6.596 7 N -0.715 5.715 8 C 0.202 3.798 9 H 0.086 0.914 10 C 0.023 3.977 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.071 4.071 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.107 4.107 25 H 0.220 0.780 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.397 0.603 29 H 0.398 0.602 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -11.686 -3.397 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.126 3.874 4 N -0.409 5.409 5 C 0.406 3.594 6 O -0.475 6.475 7 N -0.367 5.367 8 C 0.097 3.903 9 H 0.104 0.896 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.237 0.763 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.231 0.769 29 H 0.233 0.767 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.660 -11.967 -3.984 14.263 hybrid contribution -1.026 1.327 0.259 1.697 sum -7.685 -10.640 -3.726 13.644 Atomic orbital electron populations 1.24965 0.95892 1.00650 0.98663 1.23095 0.94404 1.00690 1.01742 1.17832 0.82353 0.98800 0.88387 1.45045 1.06075 1.65117 1.24666 1.15927 0.81635 0.79229 0.82658 1.90880 1.54628 1.55398 1.46595 1.45132 1.09173 1.58786 1.23633 1.20115 0.78865 0.91586 0.99688 0.89649 1.19393 0.98099 0.90312 0.93589 1.21109 1.46851 0.90763 0.97045 0.92406 1.24982 0.95186 0.99163 0.94794 1.69948 1.47698 1.27598 1.07898 0.86654 0.78862 0.83214 0.79242 1.20332 1.21344 1.20205 1.20605 0.94324 0.96713 0.95633 1.20899 0.99724 0.95261 0.96578 1.21034 0.96878 0.96218 1.00288 1.20986 0.95295 1.00021 0.99066 1.21036 0.99486 0.95979 0.97647 1.21017 0.96512 0.95319 0.99739 0.76301 0.89370 0.89463 0.76908 0.76749 0.95346 0.94945 0.92836 0.86632 0.86838 0.86909 0.86645 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.20 -2.23 13.46 -37.12 -0.50 -2.73 16 3 C 0.25 3.14 6.15 -6.83 -0.04 3.10 16 4 N -0.75 -10.63 5.54 -68.12 -0.38 -11.01 16 5 C 0.71 12.82 8.47 -86.92 -0.74 12.09 16 6 O -0.60 -12.88 16.04 5.29 0.08 -12.80 16 7 N -0.71 -13.07 4.10 -59.82 -0.25 -13.32 16 8 C 0.20 4.15 2.11 -69.08 -0.15 4.01 16 9 H 0.09 1.92 7.48 -51.93 -0.39 1.53 16 10 C 0.02 0.56 4.47 -27.89 -0.12 0.44 16 11 C -0.52 -13.73 8.85 -34.44 -0.30 -14.04 16 12 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 15 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.07 -1.34 4.86 -104.62 -0.51 -1.85 16 20 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 21 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 22 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.12 -1.89 10.05 -39.58 -0.40 -2.28 16 24 C -0.11 -1.89 9.67 -39.58 -0.38 -2.28 16 25 H 0.22 1.21 7.80 -54.09 -0.42 0.78 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.40 4.77 8.47 -40.82 -0.35 4.42 16 29 H 0.40 6.71 8.59 -40.82 -0.35 6.36 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.12 1.86 7.73 -52.49 -0.41 1.46 16 34 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.12 2.03 8.04 -52.49 -0.42 1.60 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -31.75 332.93 -8.47 -40.22 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.84 Total: 10.57 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.83 Total: -9.98 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.11 Total: -49.08 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.75 -8.47 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158974061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.838 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds