Wall clock time and date at job start Mon Mar 30 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46680 * 254.97542 * 3 2 1 5 5 C 1.34775 * 119.99725 * 180.02562 * 4 3 2 6 6 O 1.21596 * 120.00015 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00181 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00556 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 4.40634 * 5.51418 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47322 * 134.97640 * 3 2 1 27 27 H 1.09001 * 109.47518 * 14.97105 * 3 2 1 28 28 H 0.96998 * 120.00038 * 0.02562 * 4 3 2 29 29 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 30 30 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 31 31 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 33 33 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 34 34 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 35 35 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 36 36 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 37 37 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3590 1.3341 5 6 4.4592 0.4239 1.5719 6 8 5.2495 0.1847 0.6792 7 7 4.9082 0.7540 2.7989 8 6 6.3485 0.8241 3.0576 9 1 6.8599 0.0573 2.4755 10 6 6.6111 0.5934 4.5471 11 6 6.2074 -0.8107 4.9168 12 1 5.8043 -1.4725 4.1645 13 6 6.3585 -1.2525 6.2142 14 7 6.8497 -0.4467 7.1302 15 14 5.8653 -2.9954 6.6707 16 1 7.0273 -3.9021 6.4898 17 1 5.4264 -3.0302 8.0889 18 1 4.7501 -3.4394 5.7964 19 6 6.8646 2.1833 2.6612 20 6 6.1132 3.3125 2.9277 21 6 6.5886 4.5598 2.5680 22 6 7.8112 4.6769 1.9335 23 6 8.5601 3.5471 1.6623 24 6 8.0867 2.3004 2.0260 25 1 -1.0500 0.0002 -0.0002 26 1 3.0091 0.7271 -0.7269 27 1 3.0099 -0.9919 -0.2655 28 1 2.5037 0.5494 2.0462 29 1 4.2778 0.9452 3.5109 30 1 6.0292 1.3049 5.1331 31 1 7.6718 0.7331 4.7550 32 1 6.9556 -0.7574 8.0430 33 1 5.1562 3.2207 3.4196 34 1 6.0036 5.4425 2.7802 35 1 8.1814 5.6511 1.6501 36 1 9.5155 3.6386 1.1671 37 1 8.6720 1.4177 1.8141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158974193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:18 Heat of formation + Delta-G solvation = 23.787653 kcal Electronic energy + Delta-G solvation = -20022.898800 eV Core-core repulsion = 16958.653588 eV Total energy + Delta-G solvation = -3064.245212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24558 -39.89830 -37.11887 -36.18992 -34.72572 -33.62951 -32.20618 -31.65200 -30.52252 -27.98111 -26.41844 -23.77480 -23.36484 -22.23453 -21.29721 -20.06894 -18.84862 -18.46097 -17.70436 -17.25787 -16.60241 -16.51050 -16.03627 -15.91982 -15.43607 -14.93595 -14.83448 -14.42475 -14.18190 -14.16091 -14.02435 -13.64689 -13.41200 -12.90284 -12.64285 -12.44984 -12.13275 -11.85907 -11.80720 -11.57131 -11.44958 -11.31136 -11.19173 -10.58105 -10.29641 -9.76285 -9.70173 -9.48765 -8.19397 -6.29078 0.53432 0.58756 1.32229 1.39532 1.41266 1.51137 1.83291 2.21586 2.27983 2.40520 2.98697 3.14284 3.35393 3.49928 4.02495 4.06480 4.23407 4.34587 4.44361 4.54046 4.55441 4.67851 4.78494 4.81632 5.00246 5.15301 5.22558 5.30252 5.40787 5.45218 5.63646 5.64351 5.66720 5.79440 5.88887 6.10567 6.18383 6.23116 6.58590 6.83468 7.13797 7.39681 7.63303 8.91298 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.009187 B = 0.007378 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.918316 B = 3794.135208 C = 6276.365348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.247 4.247 3 C 0.252 3.748 4 N -0.736 5.736 5 C 0.704 3.296 6 O -0.634 6.634 7 N -0.711 5.711 8 C 0.219 3.781 9 H 0.058 0.942 10 C 0.038 3.962 11 C -0.527 4.527 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.956 3.044 16 H -0.279 1.279 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.098 4.098 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.258 0.742 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.409 0.591 29 H 0.405 0.595 30 H 0.013 0.987 31 H 0.006 0.994 32 H 0.264 0.736 33 H 0.119 0.881 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.876 7.634 -10.927 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.248 4.248 3 C 0.129 3.871 4 N -0.393 5.393 5 C 0.404 3.596 6 O -0.516 6.516 7 N -0.363 5.363 8 C 0.113 3.887 9 H 0.076 0.924 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.151 4.151 25 H 0.274 0.726 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.245 0.755 29 H 0.240 0.760 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.096 7.409 -11.550 15.933 hybrid contribution -0.589 -1.011 1.216 1.688 sum -8.685 6.398 -10.334 14.938 Atomic orbital electron populations 1.25857 0.96573 0.98517 0.95206 1.22944 0.94342 1.02871 1.04614 1.17759 0.83890 1.01553 0.83909 1.44924 1.04670 1.75811 1.13896 1.16009 0.82638 0.77829 0.83092 1.90853 1.56018 1.59120 1.45561 1.44921 1.07928 1.73191 1.10301 1.19600 0.79430 0.92301 0.97387 0.92393 1.19141 0.96087 0.96106 0.88642 1.21394 1.42060 0.98601 0.94494 0.92944 1.25765 0.95182 1.01236 0.96579 1.70071 1.46195 1.37414 1.02873 0.85585 0.78631 0.80193 0.77428 1.20447 1.20584 1.19261 1.20487 0.95654 0.95903 0.97870 1.21051 0.99995 0.92479 1.00352 1.21431 0.96986 0.97211 0.98735 1.21463 0.94812 0.99347 0.99148 1.21385 1.00767 0.91931 1.00096 1.21179 0.96031 0.98725 0.99166 0.72597 0.89678 0.90187 0.75503 0.75994 0.96878 0.97582 0.92738 0.86250 0.83698 0.83152 0.83845 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 19.25 74.32 1.43 -0.81 16 2 C -0.25 -5.21 13.46 31.12 0.42 -4.79 16 3 C 0.25 6.38 6.15 84.57 0.52 6.90 16 4 N -0.74 -20.91 5.54 -487.67 -2.70 -23.61 16 5 C 0.70 26.32 8.52 179.06 1.53 27.85 16 6 O -0.63 -28.46 16.01 -4.02 -0.06 -28.53 16 7 N -0.71 -26.79 4.02 -461.40 -1.86 -28.65 16 8 C 0.22 9.47 2.12 44.24 0.09 9.56 16 9 H 0.06 2.81 7.44 -2.38 -0.02 2.79 16 10 C 0.04 1.90 4.50 29.85 0.13 2.04 16 11 C -0.53 -28.77 8.84 25.60 0.23 -28.54 16 12 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 13 C 0.01 0.61 5.46 84.66 0.46 1.07 16 14 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 15 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 C -0.10 -3.80 4.91 -19.87 -0.10 -3.90 16 20 C -0.12 -4.09 9.33 22.27 0.21 -3.88 16 21 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.12 -3.62 10.05 22.27 0.22 -3.39 16 24 C -0.13 -4.80 9.67 22.27 0.22 -4.59 16 25 H 0.26 1.64 7.80 -4.42 -0.03 1.61 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.41 9.60 8.46 -92.71 -0.78 8.82 16 29 H 0.40 13.77 8.62 -92.71 -0.80 12.97 16 30 H 0.01 0.67 8.14 -2.38 -0.02 0.66 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.26 14.57 8.31 -92.70 -0.77 13.79 16 33 H 0.12 3.81 7.71 -2.91 -0.02 3.78 16 34 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -70.58 332.92 2.99 -67.59 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.50 Total: 30.24 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.81 Total: -8.93 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.27 Total: -106.02 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.06 Total: -28.53 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.58 2.99 -67.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158974193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.374 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds