Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 N 1.46499 * 109.47017 * 179.97438 * 3 2 1 5 5 C 1.36766 * 119.99786 * 274.06723 * 4 3 2 6 6 H 1.08000 * 119.99851 * 174.58761 * 5 4 3 7 7 C 1.39121 * 119.99917 * 354.58610 * 5 4 3 8 8 N 1.31318 * 120.00310 * 34.64847 * 7 5 4 9 9 Si 1.86803 * 120.00124 * 214.64380 * 7 5 4 10 10 H 1.48495 * 109.47064 * 95.00002 * 9 7 5 11 11 H 1.48498 * 109.47164 * 215.00263 * 9 7 5 12 12 H 1.48498 * 109.47028 * 335.00350 * 9 7 5 13 13 C 1.34777 * 120.00422 * 94.07111 * 4 3 2 14 14 O 1.21593 * 119.99770 * 185.92578 * 13 4 3 15 15 C 1.47741 * 119.99592 * 5.91749 * 13 4 3 16 16 C 1.39752 * 120.00101 * 55.42264 * 15 13 4 17 17 C 1.37640 * 119.99915 * 179.97438 * 16 15 13 18 18 C 1.39738 * 120.00337 * 0.02562 * 17 16 15 19 19 C 1.43201 * 120.00231 * 179.97438 * 18 17 16 20 20 N 7.48363 * 84.38760 * 290.03876 * 2 1 3 21 21 C 1.39709 * 120.00206 * 0.26626 * 18 17 16 22 22 C 1.37694 * 119.99313 * 359.45200 * 21 18 17 23 23 C 1.50703 * 119.99349 * 180.27363 * 22 21 18 24 24 H 1.09005 * 109.47433 * 300.00751 * 1 2 3 25 25 H 1.09005 * 109.47210 * 60.00377 * 1 2 3 26 26 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47195 * 239.99505 * 2 1 3 28 28 H 1.09006 * 109.46700 * 119.99519 * 2 1 3 29 29 H 1.08999 * 109.47196 * 59.99455 * 3 2 1 30 30 H 1.08997 * 109.47148 * 299.99340 * 3 2 1 31 31 H 0.96996 * 120.00524 * 180.02562 * 8 7 5 32 32 H 1.08004 * 119.99496 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.99797 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.99705 * 179.72334 * 21 18 17 35 35 H 1.09002 * 109.47138 * 275.16426 * 23 22 21 36 36 H 1.09000 * 109.47478 * 35.17008 * 23 22 21 37 37 H 1.09009 * 109.46743 * 155.16503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1883 1.3586 1.1824 6 1 5.2646 1.2705 1.1787 7 6 3.4967 1.3870 2.3892 8 7 2.3093 0.8333 2.4788 9 14 4.2573 2.2124 3.8824 10 1 3.7690 3.6116 3.9769 11 1 3.8714 1.4695 5.1089 12 1 5.7362 2.2124 3.7484 13 6 4.1794 1.5252 -1.1633 14 8 5.3905 1.4169 -1.1732 15 6 3.4472 1.7472 -2.4271 16 6 2.5964 2.8481 -2.5577 17 6 1.9146 3.0552 -3.7353 18 6 2.0727 2.1643 -4.8002 19 6 1.3629 2.3795 -6.0252 20 7 0.7981 2.5520 -6.9969 21 6 2.9185 1.0603 -4.6677 22 6 3.6050 0.8563 -3.4917 23 6 4.5221 -0.3312 -3.3509 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.8270 0.8534 3.3201 32 1 2.4739 3.5364 -1.7344 33 1 1.2568 3.9058 -3.8360 34 1 3.0372 0.3694 -5.4892 35 1 3.9435 -1.2030 -3.0454 36 1 5.0053 -0.5325 -4.3070 37 1 5.2811 -0.1169 -2.5983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162419351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = 27.138900 kcal Electronic energy + Delta-G solvation = -20819.847156 eV Core-core repulsion = 17755.747265 eV Total energy + Delta-G solvation = -3064.099891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92153 -38.04822 -36.29771 -35.43701 -32.59460 -32.52316 -31.66566 -30.94180 -26.95936 -26.00559 -25.13003 -23.63582 -21.77928 -20.74416 -19.66011 -18.14011 -17.10387 -16.62619 -15.61926 -15.16569 -14.42558 -14.25678 -13.96822 -13.86720 -13.70300 -13.49644 -13.12373 -13.07193 -12.82972 -12.79507 -12.43556 -12.04864 -11.87208 -11.63276 -11.44263 -11.37147 -11.05030 -10.96424 -10.83089 -10.47441 -10.41120 -10.23526 -9.72488 -8.89799 -8.72975 -8.54363 -8.36516 -7.97058 -6.62689 -3.84838 0.79221 1.48852 2.67791 2.89391 3.07292 3.19498 3.24848 3.69468 3.92456 3.96286 4.07988 4.69963 4.81544 4.95132 5.02806 5.32310 5.40397 5.57287 5.75130 5.90072 5.95102 5.96949 6.03895 6.07739 6.18835 6.27171 6.36757 6.40171 6.55283 6.62248 6.73382 6.81134 6.85882 6.97704 7.17618 7.33945 7.50137 7.63555 7.94992 8.34282 9.01320 9.25516 9.84360 10.36292 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.005621 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.550530 B = 4980.071953 C = 5365.490780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.110 3.890 4 N -0.417 5.417 5 C -0.317 4.317 6 H 0.111 0.889 7 C 0.044 3.956 8 N -0.835 5.835 9 Si 0.910 3.090 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.458 3.542 14 O -0.587 6.587 15 C -0.048 4.048 16 C -0.100 4.100 17 C -0.079 4.079 18 C -0.040 4.040 19 C 0.266 3.734 20 N -0.436 5.436 21 C -0.075 4.075 22 C -0.053 4.053 23 C -0.130 4.130 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.271 0.729 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 0.465 -5.444 6.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C -0.013 4.013 4 N -0.132 5.132 5 C -0.444 4.444 6 H 0.129 0.871 7 C -0.163 4.163 8 N -0.471 5.471 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.248 3.752 14 O -0.474 6.474 15 C -0.053 4.053 16 C -0.119 4.119 17 C -0.100 4.100 18 C -0.044 4.044 19 C -0.049 4.049 20 N -0.112 5.112 21 C -0.095 4.095 22 C -0.055 4.055 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.060 0.629 -6.751 7.903 hybrid contribution 0.179 0.282 1.136 1.184 sum -3.881 0.911 -5.615 6.886 Atomic orbital electron populations 1.21593 0.97230 1.00134 1.00511 1.21851 0.94031 0.97880 1.02344 1.21898 0.80445 0.97674 1.01272 1.43859 1.05554 1.58715 1.05046 1.19748 0.93671 1.49476 0.81481 0.87111 1.25258 0.95911 0.96001 0.99149 1.70203 1.14688 1.34968 1.27278 0.86172 0.80321 0.79836 0.80090 1.20204 1.21078 1.19062 1.17590 0.87336 0.87722 0.82601 1.90601 1.13376 1.57842 1.85624 1.20434 0.94870 0.94305 0.95642 1.21241 0.95706 0.97567 0.97385 1.20967 0.99108 0.98168 0.91733 1.15945 1.00726 0.99104 0.88643 1.25850 0.92996 0.93180 0.92846 1.81256 1.10094 1.08591 1.11242 1.20894 0.95185 0.95837 0.97601 1.19807 0.96999 0.96635 0.92024 1.21026 0.99348 0.94578 1.03687 0.92740 0.94444 0.94041 0.95162 0.87857 0.88617 0.93318 0.91823 0.84589 0.85162 0.85192 0.91291 0.91816 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.12 -2.39 5.71 -26.73 -0.15 -2.54 16 3 C 0.11 2.23 4.50 -4.04 -0.02 2.21 16 4 N -0.42 -9.66 2.62 -115.93 -0.30 -9.96 16 5 C -0.32 -8.01 9.37 -15.02 -0.14 -8.16 16 6 H 0.11 3.02 7.36 -52.49 -0.39 2.63 16 7 C 0.04 1.03 4.88 -17.44 -0.09 0.94 16 8 N -0.84 -19.19 8.56 55.50 0.47 -18.71 16 9 Si 0.91 18.75 29.67 -169.99 -5.04 13.71 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.46 10.35 6.40 -12.38 -0.08 10.27 16 14 O -0.59 -15.17 14.73 5.28 0.08 -15.09 16 15 C -0.05 -0.87 4.89 -104.90 -0.51 -1.38 16 16 C -0.10 -1.52 7.47 -39.23 -0.29 -1.81 16 17 C -0.08 -1.01 9.73 -39.24 -0.38 -1.39 16 18 C -0.04 -0.53 5.74 -106.86 -0.61 -1.14 16 19 C 0.27 3.60 15.32 -22.44 -0.34 3.25 16 20 N -0.44 -6.62 18.54 41.88 0.78 -5.84 16 21 C -0.07 -0.99 9.40 -39.23 -0.37 -1.36 16 22 C -0.05 -0.85 5.91 -104.27 -0.62 -1.47 16 23 C -0.13 -2.01 9.68 36.01 0.35 -1.66 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 2.32 6.21 -51.93 -0.32 2.00 16 29 H 0.10 2.07 5.95 -51.93 -0.31 1.76 16 30 H 0.05 0.87 4.47 -51.93 -0.23 0.64 16 31 H 0.27 5.91 8.31 -40.82 -0.34 5.57 16 32 H 0.14 1.99 7.61 -52.48 -0.40 1.59 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.10 1.87 5.56 -51.92 -0.29 1.58 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -26.97 314.76 -6.62 -33.59 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.45 Total: 3.64 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.89 Total: -6.08 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.95 Total: -34.51 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.04 Total: 13.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.97 -6.62 -33.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162419351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.726 kcal (2) G-P(sol) polarization free energy of solvation -26.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds