Wall clock time and date at job start Mon Mar 30 2020 01:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47004 * 2 1 4 4 C 1.52994 * 109.47228 * 120.00223 * 2 1 3 5 5 C 1.47203 * 109.47125 * 185.00116 * 4 2 1 6 6 N 3.43552 * 154.82490 * 111.56573 * 2 1 3 7 7 N 1.46499 * 109.47267 * 240.00452 * 2 1 3 8 8 C 1.46500 * 119.99608 * 299.99912 * 7 2 1 9 9 C 1.34774 * 120.00106 * 119.99907 * 7 2 1 10 10 O 1.21543 * 120.00074 * 5.24495 * 9 7 2 11 11 C 1.47890 * 119.99863 * 185.24707 * 9 7 2 12 12 C 1.39917 * 120.02666 * 21.45945 * 11 9 7 13 13 C 1.38331 * 120.35760 * 179.71554 * 12 11 9 14 14 C 1.37745 * 120.41179 * 0.56199 * 13 12 11 15 15 C 1.40753 * 120.04116 * 359.71930 * 14 13 12 16 16 C 1.41433 * 120.17899 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99797 * 150.22321 * 16 15 14 18 18 C 1.39933 * 120.00323 * 330.23539 * 16 15 14 19 19 N 1.30822 * 120.00449 * 166.84123 * 18 16 15 20 20 Si 1.86801 * 119.99858 * 346.83568 * 18 16 15 21 21 H 1.48499 * 109.47100 * 88.90021 * 20 18 16 22 22 H 1.48495 * 109.47669 * 208.90263 * 20 18 16 23 23 H 1.48506 * 109.47238 * 328.90606 * 20 18 16 24 24 C 1.38996 * 120.02211 * 201.73681 * 11 9 7 25 25 H 1.09005 * 109.47008 * 299.99900 * 1 2 3 26 26 H 1.09001 * 109.47207 * 59.99652 * 1 2 3 27 27 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47172 * 304.99996 * 4 2 1 29 29 H 1.09002 * 109.46999 * 64.99788 * 4 2 1 30 30 H 1.09001 * 109.47373 * 84.52513 * 8 7 2 31 31 H 1.08998 * 109.46788 * 204.51989 * 8 7 2 32 32 H 1.08997 * 109.47431 * 324.52207 * 8 7 2 33 33 H 1.08007 * 119.81889 * 359.97438 * 12 11 9 34 34 H 1.07999 * 119.78995 * 180.25431 * 13 12 11 35 35 H 1.08001 * 119.98471 * 179.73957 * 14 13 12 36 36 H 0.96997 * 120.00361 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.20462 * 359.97220 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5071 -0.6174 1.3112 6 7 4.6392 -0.5372 1.3591 7 7 2.0184 -0.6905 -1.1962 8 6 1.6644 -2.0931 -1.4281 9 6 2.7932 -0.0355 -2.0833 10 8 3.1656 1.0968 -1.8453 11 6 3.1903 -0.6943 -3.3464 12 6 2.4421 -1.7681 -3.8412 13 6 2.8039 -2.3856 -5.0250 14 6 3.9111 -1.9584 -5.7243 15 6 4.6794 -0.8836 -5.2391 16 6 5.8165 -0.4422 -5.9550 17 1 6.1182 0.5936 -5.9040 18 6 6.5505 -1.3474 -6.7296 19 7 7.4347 -0.9075 -7.5876 20 14 6.2679 -3.1840 -6.5385 21 1 5.1877 -3.6172 -7.4608 22 1 7.5192 -3.9140 -6.8642 23 1 5.8717 -3.4808 -5.1383 24 6 4.3104 -0.2510 -4.0398 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2055 30 1 0.6900 -2.1465 -1.9136 31 1 2.4152 -2.5561 -2.0684 32 1 1.6248 -2.6202 -0.4749 33 1 1.5749 -2.1140 -3.2981 34 1 2.2174 -3.2110 -5.4007 35 1 4.1897 -2.4483 -6.6456 36 1 7.9437 -1.5350 -8.1243 37 1 4.8932 0.5749 -3.6595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:52 Heat of formation + Delta-G solvation = 31.368043 kcal Electronic energy + Delta-G solvation = -20426.639320 eV Core-core repulsion = 17362.722818 eV Total energy + Delta-G solvation = -3063.916502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12208 -37.73341 -36.84491 -35.74403 -33.89092 -32.70583 -30.40503 -29.93197 -28.42392 -27.13957 -25.21119 -23.59840 -21.23173 -20.76802 -19.32782 -17.93587 -17.51031 -16.62431 -16.15285 -15.58210 -15.42729 -14.76971 -14.37241 -13.98146 -13.62249 -13.53779 -13.34964 -13.07126 -12.78138 -12.71680 -12.53466 -12.40257 -12.30841 -11.89067 -11.76822 -11.62373 -11.28056 -11.13579 -11.03023 -10.67039 -10.40826 -9.88177 -9.71016 -9.40725 -9.11401 -8.59728 -7.88231 -7.74149 -6.99150 -4.56666 1.90244 2.49530 2.79815 2.82909 3.03056 3.12590 3.16463 3.22364 3.51149 3.90869 3.93037 4.44505 4.59482 4.86228 4.98124 5.05944 5.18969 5.23924 5.28390 5.36681 5.45873 5.53418 5.82251 5.88177 5.90123 5.98544 6.06090 6.33117 6.61550 6.63777 6.70575 6.97469 7.19118 7.34975 7.47509 7.59346 7.63113 7.73761 7.94418 8.27302 8.51052 8.58445 8.70408 10.03350 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.004978 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.611677 B = 5623.769206 C = 5888.499324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.108 0.892 4 C -0.037 4.037 5 C 0.200 3.800 6 N -0.425 5.425 7 N -0.616 5.616 8 C 0.062 3.938 9 C 0.567 3.433 10 O -0.543 6.543 11 C -0.107 4.107 12 C -0.238 4.238 13 C -0.084 4.084 14 C -0.228 4.228 15 C 0.082 3.918 16 C -0.440 4.440 17 H 0.093 0.907 18 C 0.080 3.920 19 N -0.808 5.808 20 Si 0.919 3.081 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.246 1.246 24 C -0.137 4.137 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.287 0.713 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 -5.259 12.648 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.126 0.874 4 C -0.078 4.078 5 C -0.118 4.118 6 N -0.101 5.101 7 N -0.351 5.351 8 C -0.080 4.080 9 C 0.359 3.641 10 O -0.420 6.420 11 C -0.110 4.110 12 C -0.257 4.257 13 C -0.103 4.103 14 C -0.247 4.247 15 C 0.079 3.921 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.138 4.138 19 N -0.432 5.432 20 Si 0.746 3.254 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.170 1.170 24 C -0.157 4.157 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.607 -4.513 12.652 18.422 hybrid contribution -0.471 -0.903 -0.199 1.038 sum -13.078 -5.416 12.453 18.853 Atomic orbital electron populations 1.22103 0.93561 1.02827 1.03087 1.20968 0.94548 0.98437 0.82771 0.87386 1.19751 0.82684 1.04526 1.00840 1.28967 0.95210 0.93953 0.93697 1.81237 1.12942 1.07901 1.08040 1.47773 1.52138 1.12662 1.22509 1.22561 1.01942 0.81677 1.01864 1.18923 0.76303 0.85382 0.83525 1.90700 1.54570 1.19111 1.77648 1.19366 0.98619 0.98479 0.94549 1.21300 1.03782 1.00651 0.99951 1.20553 0.96557 0.98483 0.94674 1.21291 0.98399 1.03490 1.01532 1.17706 0.92863 0.91028 0.90472 1.19550 1.07674 0.98513 1.21118 0.88888 1.26179 0.93540 1.02308 0.91806 1.69648 1.18890 1.38465 1.16153 0.86266 0.76604 0.81120 0.81395 1.19498 1.21984 1.16950 1.21239 0.97343 1.02250 0.94896 0.91088 0.91473 0.91807 0.86397 0.87215 0.92180 0.87684 0.92334 0.85822 0.88251 0.87679 0.90284 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.19 37.16 0.34 -0.73 16 2 C 0.14 1.41 2.61 -67.93 -0.18 1.23 16 3 H 0.11 1.37 6.91 -51.93 -0.36 1.02 16 4 C -0.04 -0.28 5.13 -29.52 -0.15 -0.43 16 5 C 0.20 2.66 15.14 -20.76 -0.31 2.35 16 6 N -0.42 -7.38 18.54 42.15 0.78 -6.60 16 7 N -0.62 -8.47 2.46 -175.03 -0.43 -8.90 16 8 C 0.06 0.66 7.75 59.85 0.46 1.12 16 9 C 0.57 10.98 7.52 -12.31 -0.09 10.89 16 10 O -0.54 -12.22 15.88 5.33 0.08 -12.14 16 11 C -0.11 -2.28 5.56 -105.04 -0.58 -2.86 16 12 C -0.24 -4.42 7.57 -38.92 -0.29 -4.71 16 13 C -0.08 -1.68 10.01 -39.73 -0.40 -2.08 16 14 C -0.23 -5.30 7.12 -38.81 -0.28 -5.57 16 15 C 0.08 2.10 5.16 -106.87 -0.55 1.55 16 16 C -0.44 -12.05 9.60 -37.73 -0.36 -12.41 16 17 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 18 C 0.08 2.11 5.46 -17.35 -0.09 2.02 16 19 N -0.81 -21.61 13.93 55.55 0.77 -20.84 16 20 Si 0.92 20.65 24.41 -169.99 -4.15 16.50 16 21 H -0.27 -5.75 6.46 56.52 0.36 -5.38 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.25 -5.64 6.87 56.52 0.39 -5.25 16 24 C -0.14 -3.36 9.33 -38.44 -0.36 -3.72 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.11 0.58 6.49 -51.93 -0.34 0.24 16 30 H 0.06 0.54 7.17 -51.93 -0.37 0.16 16 31 H 0.11 1.38 4.97 -51.93 -0.26 1.12 16 32 H 0.06 0.44 6.36 -51.93 -0.33 0.11 16 33 H 0.12 1.80 4.09 -52.48 -0.21 1.59 16 34 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 2.43 4.15 -52.49 -0.22 2.21 16 36 H 0.29 6.93 8.30 -40.82 -0.34 6.59 16 37 H 0.11 2.84 7.79 -52.49 -0.41 2.43 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -32.92 307.26 -5.36 -38.28 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.19 Total: 2.43 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.85 Total: -13.37 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 1.12 Total: -36.33 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.15 Total: 16.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.92 -5.36 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.645 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds