Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47004 * 2 1 4 4 C 1.52994 * 109.47228 * 120.00223 * 2 1 3 5 5 C 1.47203 * 109.47125 * 185.00116 * 4 2 1 6 6 N 3.43552 * 154.82490 * 111.56573 * 2 1 3 7 7 N 1.46499 * 109.47267 * 240.00452 * 2 1 3 8 8 C 1.46500 * 119.99608 * 299.99912 * 7 2 1 9 9 C 1.34774 * 120.00106 * 119.99907 * 7 2 1 10 10 O 1.21543 * 120.00074 * 5.24495 * 9 7 2 11 11 C 1.47890 * 119.99863 * 185.24707 * 9 7 2 12 12 C 1.39917 * 120.02666 * 21.45945 * 11 9 7 13 13 C 1.38331 * 120.35760 * 179.71554 * 12 11 9 14 14 C 1.37745 * 120.41179 * 0.56199 * 13 12 11 15 15 C 1.40753 * 120.04116 * 359.71930 * 14 13 12 16 16 C 1.41433 * 120.17899 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99797 * 150.22321 * 16 15 14 18 18 C 1.39933 * 120.00323 * 330.23539 * 16 15 14 19 19 N 1.30822 * 120.00449 * 166.84123 * 18 16 15 20 20 Si 1.86801 * 119.99858 * 346.83568 * 18 16 15 21 21 H 1.48499 * 109.47100 * 88.90021 * 20 18 16 22 22 H 1.48495 * 109.47669 * 208.90263 * 20 18 16 23 23 H 1.48506 * 109.47238 * 328.90606 * 20 18 16 24 24 C 1.38996 * 120.02211 * 201.73681 * 11 9 7 25 25 H 1.09005 * 109.47008 * 299.99900 * 1 2 3 26 26 H 1.09001 * 109.47207 * 59.99652 * 1 2 3 27 27 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47172 * 304.99996 * 4 2 1 29 29 H 1.09002 * 109.46999 * 64.99788 * 4 2 1 30 30 H 1.09001 * 109.47373 * 84.52513 * 8 7 2 31 31 H 1.08998 * 109.46788 * 204.51989 * 8 7 2 32 32 H 1.08997 * 109.47431 * 324.52207 * 8 7 2 33 33 H 1.08007 * 119.81889 * 359.97438 * 12 11 9 34 34 H 1.07999 * 119.78995 * 180.25431 * 13 12 11 35 35 H 1.08001 * 119.98471 * 179.73957 * 14 13 12 36 36 H 0.96997 * 120.00361 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.20462 * 359.97220 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5071 -0.6174 1.3112 6 7 4.6392 -0.5372 1.3591 7 7 2.0184 -0.6905 -1.1962 8 6 1.6644 -2.0931 -1.4281 9 6 2.7932 -0.0355 -2.0833 10 8 3.1656 1.0968 -1.8453 11 6 3.1903 -0.6943 -3.3464 12 6 2.4421 -1.7681 -3.8412 13 6 2.8039 -2.3856 -5.0250 14 6 3.9111 -1.9584 -5.7243 15 6 4.6794 -0.8836 -5.2391 16 6 5.8165 -0.4422 -5.9550 17 1 6.1182 0.5936 -5.9040 18 6 6.5505 -1.3474 -6.7296 19 7 7.4347 -0.9075 -7.5876 20 14 6.2679 -3.1840 -6.5385 21 1 5.1877 -3.6172 -7.4608 22 1 7.5192 -3.9140 -6.8642 23 1 5.8717 -3.4808 -5.1383 24 6 4.3104 -0.2510 -4.0398 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2055 30 1 0.6900 -2.1465 -1.9136 31 1 2.4152 -2.5561 -2.0684 32 1 1.6248 -2.6202 -0.4749 33 1 1.5749 -2.1140 -3.2981 34 1 2.2174 -3.2110 -5.4007 35 1 4.1897 -2.4483 -6.6456 36 1 7.9437 -1.5350 -8.1243 37 1 4.8932 0.5749 -3.6595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = 8.244166 kcal Electronic energy + Delta-G solvation = -20427.642046 eV Core-core repulsion = 17362.722818 eV Total energy + Delta-G solvation = -3064.919229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46694 -39.29743 -38.13950 -36.95112 -35.67712 -33.96241 -32.09453 -31.57829 -29.06912 -28.22564 -27.00906 -25.01880 -22.65350 -22.36385 -20.63998 -19.41629 -18.61075 -17.95436 -17.85897 -16.93456 -16.70565 -16.34406 -15.71824 -15.39802 -14.89579 -14.72823 -14.63031 -14.37434 -14.31053 -14.16961 -13.82875 -13.56549 -13.34782 -13.11214 -12.94122 -12.83054 -12.59644 -12.51321 -12.36843 -12.06123 -11.77201 -11.65596 -11.41469 -11.14026 -10.70760 -9.80607 -9.56730 -9.49856 -8.92581 -6.60066 0.19029 0.72562 1.21042 1.38739 1.45212 1.77773 1.84754 1.91331 2.02616 2.09814 2.61422 3.12450 3.40676 3.66140 3.95178 4.19368 4.25116 4.27397 4.35595 4.45437 4.57824 4.72577 4.77635 4.82983 4.88010 4.88838 4.98756 5.07033 5.12544 5.23358 5.40016 5.48368 5.61279 5.63740 5.74872 5.81368 6.08352 6.25420 6.38214 6.63342 6.66643 6.70048 7.17163 8.17279 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.004978 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.611677 B = 5623.769206 C = 5888.499324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.130 3.870 3 H 0.072 0.928 4 C -0.032 4.032 5 C 0.224 3.776 6 N -0.514 5.514 7 N -0.602 5.602 8 C 0.044 3.956 9 C 0.556 3.444 10 O -0.592 6.592 11 C -0.115 4.115 12 C -0.194 4.194 13 C -0.083 4.083 14 C -0.230 4.230 15 C 0.064 3.936 16 C -0.492 4.492 17 H 0.041 0.959 18 C 0.039 3.961 19 N -0.858 5.858 20 Si 0.978 3.022 21 H -0.240 1.240 22 H -0.280 1.280 23 H -0.252 1.252 24 C -0.176 4.176 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.183 0.817 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.295 0.705 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 -9.604 15.042 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.026 3.974 3 H 0.091 0.909 4 C -0.072 4.072 5 C -0.093 4.093 6 N -0.192 5.192 7 N -0.334 5.334 8 C -0.097 4.097 9 C 0.347 3.653 10 O -0.474 6.474 11 C -0.118 4.118 12 C -0.212 4.212 13 C -0.101 4.101 14 C -0.249 4.249 15 C 0.061 3.939 16 C -0.522 4.522 17 H 0.060 0.940 18 C -0.174 4.174 19 N -0.484 5.484 20 Si 0.801 3.199 21 H -0.165 1.165 22 H -0.207 1.207 23 H -0.176 1.176 24 C -0.197 4.197 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.185 0.815 29 H 0.170 0.830 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.199 0.801 34 H 0.172 0.828 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.239 -8.884 15.074 25.275 hybrid contribution 0.958 0.488 -0.690 1.277 sum -17.282 -8.395 14.384 24.001 Atomic orbital electron populations 1.22067 0.89709 1.04995 1.03679 1.21292 0.97216 0.96745 0.82133 0.90944 1.20264 0.78540 1.07192 1.01188 1.30198 0.96461 0.91399 0.91205 1.81269 1.16062 1.10935 1.10927 1.47871 1.49674 1.13847 1.22036 1.22864 1.02538 0.79419 1.04832 1.18760 0.77437 0.85019 0.84117 1.90681 1.56808 1.21335 1.78603 1.19747 0.97559 0.99069 0.95429 1.22092 1.03369 0.97141 0.98610 1.21171 0.95297 0.99415 0.94224 1.21521 0.99140 1.02233 1.02006 1.17771 0.92840 0.92596 0.90645 1.19481 1.10707 0.96999 1.25019 0.94023 1.26994 0.92850 1.06623 0.90971 1.69695 1.20730 1.40170 1.17832 0.85381 0.77869 0.75435 0.81262 1.16468 1.20710 1.17586 1.21125 0.99651 1.02771 0.96148 0.88166 0.93406 0.88701 0.81459 0.82969 0.88557 0.90050 0.87596 0.80056 0.82836 0.87281 0.89459 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 71.98 0.66 -0.42 16 2 C 0.13 2.12 2.61 44.99 0.12 2.23 16 3 H 0.07 1.75 6.91 -2.38 -0.02 1.74 16 4 C -0.03 -0.31 5.13 28.79 0.15 -0.16 16 5 C 0.22 5.52 15.14 89.44 1.35 6.87 16 6 N -0.51 -18.15 18.54 20.01 0.37 -17.78 16 7 N -0.60 -14.25 2.46 -825.97 -2.03 -16.29 16 8 C 0.04 0.62 7.75 127.77 0.99 1.61 16 9 C 0.56 21.38 7.52 86.80 0.65 22.03 16 10 O -0.59 -28.16 15.88 -3.85 -0.06 -28.22 16 11 C -0.12 -4.85 5.56 -20.13 -0.11 -4.97 16 12 C -0.19 -6.32 7.57 22.70 0.17 -6.15 16 13 C -0.08 -2.91 10.01 22.17 0.22 -2.69 16 14 C -0.23 -10.40 7.12 22.77 0.16 -10.24 16 15 C 0.06 3.44 5.16 -21.32 -0.11 3.33 16 16 C -0.49 -29.78 9.60 23.47 0.23 -29.55 16 17 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 18 C 0.04 2.16 5.46 85.25 0.47 2.63 16 19 N -0.86 -49.34 13.93 21.82 0.30 -49.03 16 20 Si 0.98 42.92 24.41 68.60 1.67 44.59 16 21 H -0.24 -9.36 6.46 99.48 0.64 -8.72 16 22 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.25 -11.15 6.87 99.48 0.68 -10.47 16 24 C -0.18 -9.30 9.33 23.01 0.21 -9.09 16 25 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.18 7.67 -2.39 -0.02 0.16 16 28 H 0.17 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.15 0.31 6.49 -2.39 -0.02 0.29 16 30 H 0.10 0.81 7.17 -2.39 -0.02 0.79 16 31 H 0.08 1.62 4.97 -2.39 -0.01 1.60 16 32 H 0.11 0.64 6.36 -2.39 -0.02 0.63 16 33 H 0.18 3.86 4.09 -2.91 -0.01 3.85 16 34 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.11 4.83 4.15 -2.91 -0.01 4.81 16 36 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 37 H 0.07 4.29 7.79 -2.91 -0.02 4.27 16 Total: -1.00 -87.82 307.26 6.44 -81.38 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.02 Total: 9.90 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 5.16 Total: -24.55 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.36 Total: -83.09 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.06 Total: -28.22 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.67 Total: 44.59 kcal Total: -87.82 6.44 -81.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.622 kcal (2) G-P(sol) polarization free energy of solvation -87.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds