Wall clock time and date at job start Mon Mar 30 2020 01:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47366 * 2 1 4 4 C 1.52997 * 109.46956 * 239.99864 * 2 1 3 5 5 C 1.47198 * 109.47225 * 175.00154 * 4 2 1 6 6 N 3.43546 * 154.82393 * 248.42808 * 2 1 3 7 7 N 1.46496 * 109.47064 * 120.00095 * 2 1 3 8 8 C 1.46501 * 120.00094 * 59.99476 * 7 2 1 9 9 C 1.34782 * 120.00290 * 240.00005 * 7 2 1 10 10 O 1.21545 * 119.99541 * 4.01620 * 9 7 2 11 11 C 1.47883 * 120.00434 * 184.01713 * 9 7 2 12 12 C 1.39923 * 120.02500 * 319.93196 * 11 9 7 13 13 C 1.38326 * 120.35661 * 180.25565 * 12 11 9 14 14 C 1.37755 * 120.41307 * 359.44726 * 13 12 11 15 15 C 1.40748 * 120.03811 * 0.27335 * 14 13 12 16 16 C 1.41435 * 120.17672 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00153 * 149.42886 * 16 15 14 18 18 C 1.39934 * 119.99929 * 329.43699 * 16 15 14 19 19 N 1.30836 * 120.00117 * 163.23966 * 18 16 15 20 20 Si 1.86803 * 120.00194 * 343.23393 * 18 16 15 21 21 H 1.48493 * 109.46786 * 92.16201 * 20 18 16 22 22 H 1.48498 * 109.47275 * 212.16569 * 20 18 16 23 23 H 1.48504 * 109.46880 * 332.16371 * 20 18 16 24 24 C 1.39002 * 120.02558 * 139.63316 * 11 9 7 25 25 H 1.09001 * 109.47240 * 300.00194 * 1 2 3 26 26 H 1.09000 * 109.47270 * 59.99887 * 1 2 3 27 27 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47475 * 294.99983 * 4 2 1 29 29 H 1.09000 * 109.47465 * 55.00049 * 4 2 1 30 30 H 1.08996 * 109.47465 * 270.52409 * 8 7 2 31 31 H 1.08999 * 109.47121 * 30.52773 * 8 7 2 32 32 H 1.09006 * 109.47054 * 150.52306 * 8 7 2 33 33 H 1.07999 * 119.82194 * 359.97438 * 12 11 9 34 34 H 1.08001 * 119.79496 * 179.72456 * 13 12 11 35 35 H 1.07993 * 119.97837 * 180.29810 * 14 13 12 36 36 H 0.97000 * 120.00195 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.19880 * 0.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5070 -0.6175 -1.3113 6 7 4.6391 -0.5373 -1.3591 7 7 2.0183 -0.6906 1.1961 8 6 1.6643 -2.0932 1.4280 9 6 2.7932 -0.0357 2.0834 10 8 3.0268 1.1471 1.9294 11 6 3.3592 -0.7561 3.2442 12 6 2.5844 -1.6987 3.9290 13 6 3.1051 -2.3727 5.0189 14 6 4.3958 -2.1323 5.4359 15 6 5.1923 -1.1919 4.7560 16 6 6.5177 -0.9424 5.1819 17 1 7.2697 -0.6503 4.4639 18 6 6.8547 -1.0743 6.5337 19 7 8.1104 -1.1701 6.8885 20 14 5.5118 -1.1134 7.8316 21 1 5.1196 -2.5210 8.0956 22 1 6.0164 -0.4967 9.0847 23 1 4.3320 -0.3534 7.3461 24 6 4.6635 -0.5019 3.6521 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 0.7326 -2.1444 1.9913 31 1 1.5385 -2.5992 0.4708 32 1 2.4586 -2.5795 1.9944 33 1 1.5727 -1.8978 3.6076 34 1 2.4975 -3.0952 5.5435 35 1 4.7969 -2.6660 6.2848 36 1 8.3440 -1.2611 7.8256 37 1 5.2666 0.2216 3.1238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:54 Heat of formation + Delta-G solvation = 14.480504 kcal Electronic energy + Delta-G solvation = -20408.465757 eV Core-core repulsion = 17343.816957 eV Total energy + Delta-G solvation = -3064.648801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05726 -37.72688 -36.84306 -35.70356 -33.81407 -32.62638 -30.43103 -29.92279 -28.41420 -26.93144 -25.25952 -23.60896 -21.22661 -20.74855 -19.28352 -17.90872 -17.50401 -16.66309 -16.09057 -15.51901 -15.41624 -14.74114 -14.36776 -14.04549 -13.57231 -13.56844 -13.34106 -12.99037 -12.78072 -12.63617 -12.53335 -12.37660 -12.19974 -12.01773 -11.81262 -11.58365 -11.31545 -11.09515 -11.02352 -10.79404 -10.53294 -9.98715 -9.74656 -9.47064 -9.07605 -8.59254 -7.88491 -7.72620 -6.99415 -4.55696 2.00038 2.49954 2.79640 2.83498 3.05416 3.10444 3.17993 3.25705 3.42787 3.92904 3.93532 4.41914 4.60590 4.85655 4.98753 5.06289 5.17763 5.23423 5.30753 5.38419 5.46144 5.55696 5.84016 5.89262 5.92082 6.00139 6.06519 6.36729 6.61688 6.64276 6.71325 6.97685 7.21125 7.36260 7.48705 7.57346 7.63502 7.74655 7.94278 8.27996 8.51783 8.55463 8.71212 10.02953 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027398 B = 0.005010 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.723300 B = 5587.408648 C = 6085.570646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.108 0.892 4 C -0.037 4.037 5 C 0.198 3.802 6 N -0.423 5.423 7 N -0.616 5.616 8 C 0.072 3.928 9 C 0.569 3.431 10 O -0.542 6.542 11 C -0.103 4.103 12 C -0.222 4.222 13 C -0.083 4.083 14 C -0.226 4.226 15 C 0.085 3.915 16 C -0.443 4.443 17 H 0.092 0.908 18 C 0.083 3.917 19 N -0.806 5.806 20 Si 0.913 3.087 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.245 1.245 24 C -0.143 4.143 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.286 0.714 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 -3.188 -10.317 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.126 0.874 4 C -0.078 4.078 5 C -0.120 4.120 6 N -0.099 5.099 7 N -0.351 5.351 8 C -0.071 4.071 9 C 0.360 3.640 10 O -0.419 6.419 11 C -0.106 4.106 12 C -0.242 4.242 13 C -0.101 4.101 14 C -0.245 4.245 15 C 0.082 3.918 16 C -0.471 4.471 17 H 0.110 0.890 18 C -0.136 4.136 19 N -0.429 5.429 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.168 1.168 24 C -0.163 4.163 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.406 -2.440 -10.312 17.884 hybrid contribution -0.846 -0.220 0.740 1.145 sum -15.252 -2.660 -9.572 18.202 Atomic orbital electron populations 1.22097 0.93562 1.02801 1.03063 1.20968 0.94645 0.98393 0.82742 0.87395 1.19757 0.82688 1.04555 1.00795 1.28980 0.95217 0.94023 0.93787 1.81255 1.12893 1.07842 1.07941 1.47821 1.51876 1.12820 1.22556 1.22158 1.01940 0.81449 1.01533 1.18959 0.76383 0.86407 0.82243 1.90706 1.59705 1.15709 1.75806 1.19338 0.96082 0.99075 0.96061 1.20646 0.99477 1.02864 1.01170 1.20528 0.95133 0.98481 0.95970 1.21226 0.96002 1.02933 1.04339 1.17667 0.92945 0.89843 0.91322 1.19513 0.93984 1.39364 0.94283 0.88967 1.26158 0.96469 0.90777 1.00174 1.69684 1.18966 1.34263 1.20024 0.86304 0.81923 0.79451 0.78378 1.19463 1.21707 1.16812 1.21149 0.93503 1.01007 1.00622 0.91506 0.91114 0.91810 0.87178 0.86354 0.92466 0.91976 0.88819 0.87528 0.88240 0.87757 0.90312 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.19 37.16 0.34 -0.74 16 2 C 0.14 1.41 2.62 -67.93 -0.18 1.23 16 3 H 0.11 1.38 6.90 -51.93 -0.36 1.02 16 4 C -0.04 -0.28 5.14 -29.52 -0.15 -0.43 16 5 C 0.20 2.64 15.14 -20.76 -0.31 2.33 16 6 N -0.42 -7.39 18.54 42.15 0.78 -6.61 16 7 N -0.62 -8.50 2.46 -175.04 -0.43 -8.93 16 8 C 0.07 0.78 7.95 59.85 0.48 1.25 16 9 C 0.57 11.04 7.34 -12.31 -0.09 10.95 16 10 O -0.54 -12.22 16.26 5.33 0.09 -12.13 16 11 C -0.10 -2.19 5.19 -105.03 -0.55 -2.73 16 12 C -0.22 -4.20 7.50 -38.92 -0.29 -4.49 16 13 C -0.08 -1.66 10.01 -39.73 -0.40 -2.06 16 14 C -0.23 -5.26 7.20 -38.81 -0.28 -5.54 16 15 C 0.09 2.18 5.10 -106.87 -0.54 1.63 16 16 C -0.44 -12.16 9.57 -37.73 -0.36 -12.52 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 18 C 0.08 2.19 5.42 -17.34 -0.09 2.10 16 19 N -0.81 -21.57 13.93 55.55 0.77 -20.80 16 20 Si 0.91 20.72 24.51 -169.99 -4.17 16.55 16 21 H -0.27 -5.80 6.57 56.52 0.37 -5.42 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.24 -5.74 6.95 56.52 0.39 -5.34 16 24 C -0.14 -3.50 9.38 -38.44 -0.36 -3.86 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.11 0.59 6.48 -51.93 -0.34 0.25 16 29 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 31 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 32 H 0.09 1.25 5.51 -51.93 -0.29 0.96 16 33 H 0.11 1.64 5.54 -52.49 -0.29 1.35 16 34 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.10 2.42 4.63 -52.49 -0.24 2.17 16 36 H 0.29 6.92 8.30 -40.82 -0.34 6.58 16 37 H 0.11 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -32.93 310.21 -5.40 -38.33 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.33 Total: 1.78 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.79 Total: -12.87 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 1.12 Total: -36.33 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.17 Total: 16.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.93 -5.40 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.806 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds