Wall clock time and date at job start Mon Mar 30 2020 01:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47366 * 2 1 4 4 C 1.52997 * 109.46956 * 239.99864 * 2 1 3 5 5 C 1.47198 * 109.47225 * 175.00154 * 4 2 1 6 6 N 3.43546 * 154.82393 * 248.42808 * 2 1 3 7 7 N 1.46496 * 109.47064 * 120.00095 * 2 1 3 8 8 C 1.46501 * 120.00094 * 59.99476 * 7 2 1 9 9 C 1.34782 * 120.00290 * 240.00005 * 7 2 1 10 10 O 1.21545 * 119.99541 * 4.01620 * 9 7 2 11 11 C 1.47883 * 120.00434 * 184.01713 * 9 7 2 12 12 C 1.39923 * 120.02500 * 319.93196 * 11 9 7 13 13 C 1.38326 * 120.35661 * 180.25565 * 12 11 9 14 14 C 1.37755 * 120.41307 * 359.44726 * 13 12 11 15 15 C 1.40748 * 120.03811 * 0.27335 * 14 13 12 16 16 C 1.41435 * 120.17672 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00153 * 149.42886 * 16 15 14 18 18 C 1.39934 * 119.99929 * 329.43699 * 16 15 14 19 19 N 1.30836 * 120.00117 * 163.23966 * 18 16 15 20 20 Si 1.86803 * 120.00194 * 343.23393 * 18 16 15 21 21 H 1.48493 * 109.46786 * 92.16201 * 20 18 16 22 22 H 1.48498 * 109.47275 * 212.16569 * 20 18 16 23 23 H 1.48504 * 109.46880 * 332.16371 * 20 18 16 24 24 C 1.39002 * 120.02558 * 139.63316 * 11 9 7 25 25 H 1.09001 * 109.47240 * 300.00194 * 1 2 3 26 26 H 1.09000 * 109.47270 * 59.99887 * 1 2 3 27 27 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47475 * 294.99983 * 4 2 1 29 29 H 1.09000 * 109.47465 * 55.00049 * 4 2 1 30 30 H 1.08996 * 109.47465 * 270.52409 * 8 7 2 31 31 H 1.08999 * 109.47121 * 30.52773 * 8 7 2 32 32 H 1.09006 * 109.47054 * 150.52306 * 8 7 2 33 33 H 1.07999 * 119.82194 * 359.97438 * 12 11 9 34 34 H 1.08001 * 119.79496 * 179.72456 * 13 12 11 35 35 H 1.07993 * 119.97837 * 180.29810 * 14 13 12 36 36 H 0.97000 * 120.00195 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.19880 * 0.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5070 -0.6175 -1.3113 6 7 4.6391 -0.5373 -1.3591 7 7 2.0183 -0.6906 1.1961 8 6 1.6643 -2.0932 1.4280 9 6 2.7932 -0.0357 2.0834 10 8 3.0268 1.1471 1.9294 11 6 3.3592 -0.7561 3.2442 12 6 2.5844 -1.6987 3.9290 13 6 3.1051 -2.3727 5.0189 14 6 4.3958 -2.1323 5.4359 15 6 5.1923 -1.1919 4.7560 16 6 6.5177 -0.9424 5.1819 17 1 7.2697 -0.6503 4.4639 18 6 6.8547 -1.0743 6.5337 19 7 8.1104 -1.1701 6.8885 20 14 5.5118 -1.1134 7.8316 21 1 5.1196 -2.5210 8.0956 22 1 6.0164 -0.4967 9.0847 23 1 4.3320 -0.3534 7.3461 24 6 4.6635 -0.5019 3.6521 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 0.7326 -2.1444 1.9913 31 1 1.5385 -2.5992 0.4708 32 1 2.4586 -2.5795 1.9944 33 1 1.5727 -1.8978 3.6076 34 1 2.4975 -3.0952 5.5435 35 1 4.7969 -2.6660 6.2848 36 1 8.3440 -1.2611 7.8256 37 1 5.2666 0.2216 3.1238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:54 Heat of formation + Delta-G solvation = -8.381185 kcal Electronic energy + Delta-G solvation = -20409.457115 eV Core-core repulsion = 17343.816957 eV Total energy + Delta-G solvation = -3065.640158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40932 -39.30736 -38.15032 -36.91634 -35.65218 -33.84787 -32.16186 -31.57698 -29.06612 -27.97498 -27.10935 -25.04204 -22.63217 -22.40322 -20.61384 -19.35759 -18.61682 -18.03240 -17.78434 -16.92516 -16.69798 -16.39082 -15.74664 -15.40190 -14.95076 -14.73952 -14.56029 -14.36312 -14.27900 -14.03310 -13.88246 -13.57178 -13.37030 -13.14508 -12.89535 -12.79131 -12.65124 -12.51422 -12.37934 -12.27643 -11.79987 -11.71718 -11.57908 -11.22280 -10.71933 -9.78612 -9.58599 -9.52177 -8.94071 -6.59904 0.27230 0.71320 1.21833 1.38736 1.45589 1.70631 1.82086 1.85263 2.03790 2.10038 2.57414 3.10523 3.37507 3.65648 3.93451 4.21737 4.25144 4.27312 4.35034 4.42677 4.56055 4.71839 4.79907 4.84554 4.85890 4.88965 4.98600 5.08087 5.12683 5.22983 5.39756 5.47894 5.61123 5.64211 5.73774 5.81000 6.08037 6.25075 6.35215 6.62836 6.64895 6.70145 7.13646 8.15776 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027398 B = 0.005010 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.723300 B = 5587.408648 C = 6085.570646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.130 3.870 3 H 0.073 0.927 4 C -0.032 4.032 5 C 0.223 3.777 6 N -0.514 5.514 7 N -0.602 5.602 8 C 0.056 3.944 9 C 0.558 3.442 10 O -0.590 6.590 11 C -0.108 4.108 12 C -0.180 4.180 13 C -0.080 4.080 14 C -0.228 4.228 15 C 0.068 3.932 16 C -0.494 4.494 17 H 0.042 0.958 18 C 0.044 3.956 19 N -0.853 5.853 20 Si 0.972 3.028 21 H -0.240 1.240 22 H -0.277 1.277 23 H -0.256 1.256 24 C -0.179 4.179 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.170 0.830 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.109 0.891 36 H 0.295 0.705 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.842 -5.877 -11.056 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.026 3.974 3 H 0.092 0.908 4 C -0.072 4.072 5 C -0.094 4.094 6 N -0.192 5.192 7 N -0.334 5.334 8 C -0.084 4.084 9 C 0.349 3.651 10 O -0.471 6.471 11 C -0.111 4.111 12 C -0.199 4.199 13 C -0.098 4.098 14 C -0.247 4.247 15 C 0.065 3.935 16 C -0.524 4.524 17 H 0.060 0.940 18 C -0.170 4.170 19 N -0.480 5.480 20 Si 0.794 3.206 21 H -0.164 1.164 22 H -0.203 1.203 23 H -0.180 1.180 24 C -0.200 4.200 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.169 0.831 29 H 0.187 0.813 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.783 -5.180 -11.095 24.122 hybrid contribution 0.857 0.581 0.697 1.248 sum -19.926 -4.599 -10.398 22.941 Atomic orbital electron populations 1.22056 0.89676 1.04921 1.03702 1.21299 0.97365 0.96729 0.82028 0.90830 1.20279 0.78487 1.07185 1.01242 1.30225 0.96473 0.91413 0.91243 1.81292 1.16071 1.10941 1.10892 1.47925 1.49465 1.13998 1.22045 1.22493 1.02122 0.79217 1.04611 1.18778 0.77484 0.85924 0.82954 1.90685 1.61823 1.17725 1.76915 1.19702 0.94824 0.99405 0.97159 1.21298 1.00855 0.99108 0.98658 1.21105 0.93996 0.98790 0.95871 1.21431 0.97283 1.01942 1.04078 1.17741 0.92629 0.90914 0.92194 1.19443 0.94579 1.43626 0.94726 0.93991 1.26925 0.98699 0.90006 1.01335 1.69721 1.20606 1.36686 1.20967 0.85433 0.78520 0.80757 0.75924 1.16400 1.20320 1.18041 1.21031 0.95408 1.01913 1.01648 0.93360 0.88151 0.88814 0.83066 0.81314 0.89222 0.87375 0.91389 0.82208 0.82995 0.87380 0.89413 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 71.98 0.66 -0.45 16 2 C 0.13 2.16 2.62 44.99 0.12 2.28 16 3 H 0.07 1.79 6.90 -2.39 -0.02 1.77 16 4 C -0.03 -0.33 5.14 28.79 0.15 -0.18 16 5 C 0.22 5.66 15.14 89.44 1.35 7.01 16 6 N -0.51 -18.63 18.54 20.01 0.37 -18.26 16 7 N -0.60 -14.56 2.46 -825.97 -2.03 -16.59 16 8 C 0.06 0.87 7.95 127.77 1.02 1.88 16 9 C 0.56 21.49 7.34 86.80 0.64 22.13 16 10 O -0.59 -27.77 16.26 -3.86 -0.06 -27.83 16 11 C -0.11 -4.57 5.19 -20.13 -0.10 -4.68 16 12 C -0.18 -6.04 7.50 22.70 0.17 -5.87 16 13 C -0.08 -2.84 10.01 22.18 0.22 -2.61 16 14 C -0.23 -10.37 7.20 22.77 0.16 -10.21 16 15 C 0.07 3.64 5.10 -21.32 -0.11 3.54 16 16 C -0.49 -29.83 9.57 23.47 0.22 -29.61 16 17 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 18 C 0.04 2.47 5.42 85.25 0.46 2.93 16 19 N -0.85 -48.86 13.93 21.82 0.30 -48.56 16 20 Si 0.97 43.16 24.51 68.60 1.68 44.84 16 21 H -0.24 -9.46 6.57 99.48 0.65 -8.80 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.26 -11.73 6.95 99.48 0.69 -11.04 16 24 C -0.18 -9.45 9.38 23.01 0.22 -9.24 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.09 0.22 7.67 -2.39 -0.02 0.20 16 28 H 0.15 0.43 6.48 -2.39 -0.02 0.41 16 29 H 0.17 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.09 0.90 7.18 -2.39 -0.02 0.89 16 31 H 0.11 0.75 6.34 -2.39 -0.02 0.74 16 32 H 0.07 1.46 5.51 -2.38 -0.01 1.44 16 33 H 0.16 3.72 5.54 -2.91 -0.02 3.70 16 34 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.11 4.81 4.63 -2.91 -0.01 4.80 16 36 H 0.30 15.03 8.30 -92.71 -0.77 14.26 16 37 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -86.66 310.21 6.47 -80.18 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.03 Total: 9.30 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 5.18 Total: -23.08 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.36 Total: -83.41 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.83 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.68 Total: 44.84 kcal Total: -86.66 6.47 -80.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.804 kcal (2) G-P(sol) polarization free energy of solvation -86.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds