Wall clock time and date at job start Mon Mar 30 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99666 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00290 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46970 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47088 * 119.99589 * 8 6 4 11 11 H 1.48494 * 109.47293 * 239.99660 * 8 6 4 12 12 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 13 13 C 1.50702 * 109.46796 * 66.04964 * 12 2 1 14 14 C 1.35599 * 119.88273 * 94.72629 * 13 12 2 15 15 C 1.46404 * 118.53422 * 179.73311 * 14 13 12 16 16 C 1.39887 * 121.15129 * 180.23293 * 15 14 13 17 17 C 1.36598 * 119.71864 * 180.30336 * 16 15 14 18 18 C 1.38836 * 120.59183 * 0.02562 * 17 16 15 19 19 C 1.37810 * 120.68679 * 359.94049 * 18 17 16 20 20 C 1.39122 * 119.74636 * 0.07817 * 19 18 17 21 21 N 1.37859 * 120.96593 * 179.91357 * 20 19 18 22 22 H 0.96994 * 119.52675 * 0.03288 * 21 20 19 23 23 C 1.34458 * 120.94922 * 180.02562 * 21 20 19 24 24 O 1.21884 * 119.17530 * 180.02562 * 23 21 20 25 25 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 26 26 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 28 28 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 29 29 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 30 30 H 0.97001 * 119.99343 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46988 * 186.04548 * 12 2 1 32 32 H 1.08996 * 109.46945 * 306.05035 * 12 2 1 33 33 H 1.08003 * 120.73029 * 0.02562 * 14 13 12 34 34 H 1.07999 * 120.13871 * 0.28421 * 16 15 14 35 35 H 1.08001 * 119.70597 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.66216 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.12790 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 2.7126 4.0016 -0.6153 8 14 1.5824 4.1870 -3.1381 9 1 0.8143 3.2446 -3.9909 10 1 0.7557 5.3885 -2.8585 11 1 2.8237 4.5937 -3.8443 12 6 1.9955 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 6 2.5210 -3.0731 0.3982 15 6 2.1446 -4.4810 0.2583 16 6 3.0162 -5.4089 -0.3217 17 6 2.6325 -6.7142 -0.4434 18 6 1.3848 -7.1284 0.0030 19 6 0.5103 -6.2320 0.5782 20 6 0.8791 -4.8972 0.7123 21 7 0.0233 -3.9788 1.2821 22 1 -0.8484 -4.2673 1.5946 23 6 0.3798 -2.6887 1.4111 24 8 -0.4019 -1.9043 1.9203 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.5610 1.9274 0.8308 29 1 3.0796 1.3445 0.1082 30 1 2.9870 4.9178 -0.7774 31 1 3.0798 -0.6610 1.1755 32 1 1.5611 -0.3872 2.0627 33 1 3.4834 -2.7224 0.0558 34 1 3.9882 -5.0944 -0.6721 35 1 3.3057 -7.4304 -0.8908 36 1 1.0967 -8.1641 -0.1010 37 1 -0.4578 -6.5641 0.9227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177191344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:00 Heat of formation + Delta-G solvation = 14.672825 kcal Electronic energy + Delta-G solvation = -20179.564385 eV Core-core repulsion = 17114.923924 eV Total energy + Delta-G solvation = -3064.640461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34512 -38.84541 -36.54952 -35.46126 -34.05938 -32.40342 -30.68923 -29.67202 -27.22370 -26.47467 -24.41321 -23.54336 -22.95116 -22.18101 -20.22975 -18.52410 -17.82114 -17.27630 -16.27246 -15.76979 -15.72182 -15.06183 -14.70097 -14.60054 -14.11776 -13.98801 -13.72627 -13.29874 -13.11100 -12.95462 -12.28495 -11.85263 -11.57386 -11.40686 -11.31911 -11.13957 -10.91056 -10.78060 -10.66958 -10.34170 -10.25212 -9.94353 -9.78897 -9.15391 -8.67019 -8.38551 -8.00930 -7.14370 -5.97562 -3.98183 0.42978 1.04690 1.76006 2.89745 3.07128 3.34589 3.41563 3.47203 3.84907 4.38682 4.42924 4.48267 4.63160 4.71802 4.99225 5.03610 5.14523 5.30434 5.39443 5.57923 5.59758 5.66353 5.79797 6.03977 6.14290 6.21024 6.32583 6.39768 6.42806 6.55113 6.66024 6.70798 6.96279 7.01514 7.34238 7.43981 7.85992 8.05911 8.13359 8.27693 8.61261 9.09796 9.65555 11.13500 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.004031 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.860017 B = 6944.076069 C = 7334.611804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.535 5.535 3 C 0.191 3.809 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.105 3.895 13 C -0.154 4.154 14 C -0.022 4.022 15 C -0.119 4.119 16 C -0.057 4.057 17 C -0.154 4.154 18 C -0.074 4.074 19 C -0.165 4.165 20 C 0.179 3.821 21 N -0.634 5.634 22 H 0.411 0.589 23 C 0.539 3.461 24 O -0.525 6.525 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.017 0.983 28 H -0.007 1.007 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -23.534 2.601 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.259 5.259 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.024 4.024 13 C -0.158 4.158 14 C -0.043 4.043 15 C -0.122 4.122 16 C -0.075 4.075 17 C -0.173 4.173 18 C -0.093 4.093 19 C -0.186 4.186 20 C 0.077 3.923 21 N -0.273 5.273 22 H 0.249 0.751 23 C 0.335 3.665 24 O -0.403 6.403 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.477 -22.947 2.477 23.085 hybrid contribution -0.869 0.730 -0.018 1.135 sum -1.347 -22.217 2.459 22.393 Atomic orbital electron populations 1.22232 0.88321 0.99451 1.00352 1.62298 1.07570 1.17618 1.38407 1.19767 0.95307 0.81524 0.96781 1.21201 1.34480 0.96900 1.01604 0.91852 1.24988 0.95387 0.97322 0.96997 1.69977 1.38627 1.11355 1.33993 0.86446 0.78107 0.79320 0.83577 1.19692 1.21139 1.21035 1.20787 0.99961 0.87217 0.94424 1.20946 0.93367 0.98434 1.03026 1.22499 0.99638 0.89936 0.92238 1.18756 0.93663 0.94510 1.05242 1.20914 0.98711 0.92447 0.95441 1.20792 0.97158 0.96250 1.03144 1.21047 0.93337 0.99280 0.95635 1.20705 1.01410 0.90921 1.05570 1.17988 0.90044 0.89693 0.94580 1.43494 1.18741 1.08821 1.56205 0.75078 1.17036 0.88812 0.80638 0.79972 1.90967 1.52901 1.52425 1.44050 0.91668 0.93787 0.96395 0.98964 0.95192 0.93042 0.90092 0.93927 0.83537 0.84716 0.85549 0.85444 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 8.11 60.07 0.49 1.51 16 2 N -0.53 -12.41 4.74 -245.83 -1.17 -13.57 16 3 C 0.19 5.19 4.72 -4.97 -0.02 5.17 16 4 C -0.50 -14.61 8.51 -34.44 -0.29 -14.91 16 5 H 0.06 1.84 7.10 -52.48 -0.37 1.46 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.10 2.04 4.95 -4.98 -0.02 2.02 16 13 C -0.15 -2.55 5.02 -104.46 -0.52 -3.08 16 14 C -0.02 -0.29 9.70 -37.24 -0.36 -0.65 16 15 C -0.12 -1.38 5.87 -105.05 -0.62 -2.00 16 16 C -0.06 -0.51 9.79 -39.56 -0.39 -0.90 16 17 C -0.15 -1.16 9.97 -39.95 -0.40 -1.56 16 18 C -0.07 -0.54 10.01 -39.52 -0.40 -0.93 16 19 C -0.17 -1.40 9.92 -39.41 -0.39 -1.79 16 20 C 0.18 2.02 6.65 -83.88 -0.56 1.46 16 21 N -0.63 -7.98 5.30 -12.61 -0.07 -8.04 16 22 H 0.41 4.16 8.77 -40.82 -0.36 3.80 16 23 C 0.54 8.95 6.47 -15.30 -0.10 8.85 16 24 O -0.52 -10.37 14.71 5.02 0.07 -10.29 16 25 H 0.06 1.54 6.86 -51.93 -0.36 1.18 16 26 H 0.04 0.94 5.09 -51.93 -0.26 0.67 16 27 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 29 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.45 7.83 -51.93 -0.41 1.04 16 32 H 0.04 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -34.07 310.15 -9.11 -43.18 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.66 Total: -1.17 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.68 Total: -5.35 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.50 Total: -48.16 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.07 -9.11 -43.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.856 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds