Wall clock time and date at job start Mon Mar 30 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99666 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00290 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46970 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47088 * 119.99589 * 8 6 4 11 11 H 1.48494 * 109.47293 * 239.99660 * 8 6 4 12 12 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 13 13 C 1.50702 * 109.46796 * 66.04964 * 12 2 1 14 14 C 1.35599 * 119.88273 * 94.72629 * 13 12 2 15 15 C 1.46404 * 118.53422 * 179.73311 * 14 13 12 16 16 C 1.39887 * 121.15129 * 180.23293 * 15 14 13 17 17 C 1.36598 * 119.71864 * 180.30336 * 16 15 14 18 18 C 1.38836 * 120.59183 * 0.02562 * 17 16 15 19 19 C 1.37810 * 120.68679 * 359.94049 * 18 17 16 20 20 C 1.39122 * 119.74636 * 0.07817 * 19 18 17 21 21 N 1.37859 * 120.96593 * 179.91357 * 20 19 18 22 22 H 0.96994 * 119.52675 * 0.03288 * 21 20 19 23 23 C 1.34458 * 120.94922 * 180.02562 * 21 20 19 24 24 O 1.21884 * 119.17530 * 180.02562 * 23 21 20 25 25 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 26 26 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 28 28 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 29 29 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 30 30 H 0.97001 * 119.99343 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46988 * 186.04548 * 12 2 1 32 32 H 1.08996 * 109.46945 * 306.05035 * 12 2 1 33 33 H 1.08003 * 120.73029 * 0.02562 * 14 13 12 34 34 H 1.07999 * 120.13871 * 0.28421 * 16 15 14 35 35 H 1.08001 * 119.70597 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.66216 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.12790 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 2.7126 4.0016 -0.6153 8 14 1.5824 4.1870 -3.1381 9 1 0.8143 3.2446 -3.9909 10 1 0.7557 5.3885 -2.8585 11 1 2.8237 4.5937 -3.8443 12 6 1.9955 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 6 2.5210 -3.0731 0.3982 15 6 2.1446 -4.4810 0.2583 16 6 3.0162 -5.4089 -0.3217 17 6 2.6325 -6.7142 -0.4434 18 6 1.3848 -7.1284 0.0030 19 6 0.5103 -6.2320 0.5782 20 6 0.8791 -4.8972 0.7123 21 7 0.0233 -3.9788 1.2821 22 1 -0.8484 -4.2673 1.5946 23 6 0.3798 -2.6887 1.4111 24 8 -0.4019 -1.9043 1.9203 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.5610 1.9274 0.8308 29 1 3.0796 1.3445 0.1082 30 1 2.9870 4.9178 -0.7774 31 1 3.0798 -0.6610 1.1755 32 1 1.5611 -0.3872 2.0627 33 1 3.4834 -2.7224 0.0558 34 1 3.9882 -5.0944 -0.6721 35 1 3.3057 -7.4304 -0.8908 36 1 1.0967 -8.1641 -0.1010 37 1 -0.4578 -6.5641 0.9227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177191344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:00 Heat of formation + Delta-G solvation = -9.419308 kcal Electronic energy + Delta-G solvation = -20180.609099 eV Core-core repulsion = 17114.923924 eV Total energy + Delta-G solvation = -3065.685174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37850 -39.81738 -38.25291 -36.45562 -35.41858 -34.38997 -31.70405 -30.53492 -29.23238 -28.08541 -25.97808 -24.84199 -23.79450 -23.39360 -22.01161 -19.44289 -18.92136 -18.51791 -18.17871 -17.15648 -16.68121 -16.63245 -16.06051 -15.66998 -15.50412 -15.45868 -15.11269 -14.59822 -14.14463 -14.09735 -13.91029 -13.47583 -13.29123 -12.89159 -12.71152 -12.59986 -12.42756 -12.27257 -12.10578 -11.96210 -11.86405 -11.42655 -11.19293 -11.15924 -10.62812 -9.47993 -9.13384 -8.95057 -8.20928 -6.31443 -0.49424 0.26811 0.85794 1.40572 1.41392 1.55517 1.91491 2.08285 2.40868 2.96616 3.11112 3.41084 3.49461 3.64601 3.64831 3.99723 4.15273 4.33600 4.39034 4.44456 4.50928 4.67947 4.69549 4.71812 4.85488 4.96530 5.03735 5.11818 5.17141 5.23963 5.24617 5.50636 5.58825 5.63358 5.73571 5.82957 6.00732 6.06047 6.25163 6.55520 6.83473 6.94195 7.37896 8.90681 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.004031 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.860017 B = 6944.076069 C = 7334.611804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.534 5.534 3 C 0.205 3.795 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.973 3.027 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.273 1.273 12 C 0.111 3.889 13 C -0.206 4.206 14 C 0.018 3.982 15 C -0.149 4.149 16 C -0.056 4.056 17 C -0.149 4.149 18 C -0.060 4.060 19 C -0.167 4.167 20 C 0.161 3.839 21 N -0.622 5.622 22 H 0.422 0.578 23 C 0.535 3.465 24 O -0.578 6.578 25 H 0.052 0.948 26 H 0.060 0.940 27 H -0.003 1.003 28 H -0.044 1.044 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.091 0.909 32 H 0.018 0.982 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -27.091 0.545 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.258 5.258 3 C 0.079 3.921 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.198 1.198 12 C -0.017 4.017 13 C -0.210 4.210 14 C -0.004 4.004 15 C -0.152 4.152 16 C -0.074 4.074 17 C -0.168 4.168 18 C -0.078 4.078 19 C -0.188 4.188 20 C 0.060 3.940 21 N -0.259 5.259 22 H 0.261 0.739 23 C 0.333 3.667 24 O -0.462 6.462 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.016 0.984 28 H -0.026 1.026 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.147 -26.579 0.417 26.583 hybrid contribution -0.948 1.500 0.603 1.874 sum -0.801 -25.079 1.020 25.112 Atomic orbital electron populations 1.22067 0.88210 0.99957 0.98592 1.62244 1.07599 1.15344 1.40607 1.19458 0.94120 0.83435 0.95079 1.21457 1.34951 0.97710 1.02093 0.92083 1.25942 0.94917 0.97872 1.00924 1.70102 1.39331 1.11897 1.36158 0.85282 0.78218 0.78048 0.78742 1.18868 1.20502 1.19823 1.20695 1.00036 0.89057 0.91886 1.20516 0.95249 0.96918 1.08270 1.22825 0.98933 0.90724 0.87877 1.18906 0.94864 0.93882 1.07507 1.21222 0.99043 0.92699 0.94467 1.21249 0.97674 0.96049 1.01795 1.21570 0.92580 1.00672 0.92997 1.21056 1.02858 0.89595 1.05251 1.18381 0.89953 0.90609 0.95070 1.43274 1.19403 1.07819 1.55454 0.73890 1.17028 0.88485 0.81566 0.79664 1.90928 1.54199 1.54040 1.47031 0.92893 0.92116 0.98443 1.02622 0.96665 0.92588 0.89118 0.96384 0.81925 0.82726 0.82407 0.81908 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.92 8.11 127.69 1.04 3.95 16 2 N -0.53 -26.13 4.74 -931.66 -4.42 -30.55 16 3 C 0.21 11.79 4.72 85.56 0.40 12.20 16 4 C -0.52 -31.37 8.51 25.60 0.22 -31.15 16 5 H 0.06 3.61 7.10 -2.91 -0.02 3.59 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 8 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 9 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.11 4.63 4.95 85.56 0.42 5.05 16 13 C -0.21 -7.06 5.02 -19.76 -0.10 -7.16 16 14 C 0.02 0.47 9.70 23.79 0.23 0.70 16 15 C -0.15 -3.14 5.87 -20.14 -0.12 -3.26 16 16 C -0.06 -0.79 9.79 22.29 0.22 -0.57 16 17 C -0.15 -1.46 9.97 22.03 0.22 -1.24 16 18 C -0.06 -0.55 10.01 22.31 0.22 -0.32 16 19 C -0.17 -2.19 9.92 22.38 0.22 -1.97 16 20 C 0.16 3.31 6.65 39.02 0.26 3.57 16 21 N -0.62 -15.47 5.30 -312.13 -1.65 -17.12 16 22 H 0.42 8.40 8.77 -92.71 -0.81 7.59 16 23 C 0.54 18.49 6.47 85.00 0.55 19.04 16 24 O -0.58 -24.46 14.71 -4.94 -0.07 -24.53 16 25 H 0.05 2.62 6.86 -2.38 -0.02 2.60 16 26 H 0.06 2.73 5.09 -2.39 -0.01 2.72 16 27 H 0.00 -0.16 8.11 -2.39 -0.02 -0.18 16 28 H -0.04 -2.79 8.12 -2.39 -0.02 -2.81 16 29 H 0.02 0.91 7.93 -2.39 -0.02 0.89 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.09 3.44 7.83 -2.39 -0.02 3.42 16 32 H 0.02 0.82 7.69 -2.39 -0.02 0.80 16 33 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -77.99 310.15 0.69 -77.30 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.28 Total: 5.47 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.25 Total: -0.62 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -5.79 Total: -105.39 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.99 0.69 -77.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.881 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds