Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37088 * 120.00091 * 2 1 4 4 H 1.07997 * 119.99884 * 204.41628 * 3 2 1 5 5 C 1.38947 * 120.00145 * 24.41964 * 3 2 1 6 6 N 1.31417 * 120.00203 * 12.60300 * 5 3 2 7 7 Si 1.86809 * 120.00048 * 192.60512 * 5 3 2 8 8 H 1.48495 * 109.47039 * 59.99736 * 7 5 3 9 9 H 1.48502 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46901 * 299.99736 * 7 5 3 11 11 C 1.34779 * 119.99595 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99589 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00204 * 0.27738 * 11 2 1 14 14 C 1.52994 * 109.46967 * 179.72286 * 13 11 2 15 15 C 1.50703 * 109.46967 * 179.97438 * 14 13 11 16 16 C 1.38823 * 119.73663 * 269.72275 * 15 14 13 17 17 C 1.37748 * 120.66825 * 179.75831 * 16 15 14 18 18 C 1.39126 * 119.77649 * 0.51762 * 17 16 15 19 19 N 1.37689 * 133.50944 * 179.76783 * 18 17 16 20 20 H 0.97002 * 125.06225 * 0.02562 * 19 18 17 21 21 C 1.36827 * 109.87678 * 179.97438 * 19 18 17 22 22 C 1.34244 * 109.92945 * 359.97438 * 21 19 18 23 23 C 1.40664 * 119.33316 * 359.74121 * 18 17 16 24 24 C 1.36626 * 119.73492 * 90.00360 * 15 14 13 25 25 H 1.09003 * 109.47259 * 265.83644 * 1 2 3 26 26 H 1.09002 * 109.47099 * 25.83537 * 1 2 3 27 27 H 1.09002 * 109.47216 * 145.83350 * 1 2 3 28 28 H 0.96993 * 119.99915 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.47249 * 299.72454 * 13 11 2 30 30 H 1.08998 * 109.46726 * 59.72529 * 13 11 2 31 31 H 1.09004 * 109.47212 * 299.99859 * 14 13 11 32 32 H 1.08997 * 109.47675 * 59.99930 * 14 13 11 33 33 H 1.08004 * 119.66447 * 0.02562 * 16 15 14 34 34 H 1.08005 * 120.11298 * 180.28162 * 17 16 15 35 35 H 1.07999 * 125.03433 * 180.02562 * 21 19 18 36 36 H 1.07998 * 126.50192 * 180.02562 * 22 21 19 37 37 H 1.07996 * 120.12062 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1580 1.2290 -0.3866 5 6 1.5490 2.3367 0.4975 6 7 0.4346 2.2489 1.1884 7 14 2.3244 4.0071 0.1840 8 1 2.4051 4.2487 -1.2789 9 1 1.4942 5.0644 0.8149 10 1 3.6901 4.0360 0.7666 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 -0.0052 14 6 2.3795 -3.6352 -0.0103 15 6 1.6259 -4.9403 -0.0154 16 6 1.2871 -5.5445 1.1876 17 6 0.5942 -6.7349 1.2054 18 6 0.2385 -7.3453 0.0069 19 7 -0.4330 -8.5068 -0.3027 20 1 -0.7928 -9.1322 0.3456 21 6 -0.5182 -8.6469 -1.6611 22 6 0.0789 -7.6082 -2.2667 23 6 0.5889 -6.7318 -1.2095 24 6 1.2868 -5.5224 -1.2041 25 1 -0.3634 -0.0746 1.0250 26 1 -0.3633 0.9250 -0.4479 27 1 -0.3634 -0.8503 -0.5771 28 1 0.0150 3.0513 1.5360 29 1 0.7586 -2.5340 0.8844 30 1 0.7587 -2.5261 -0.8955 31 1 3.0062 -3.5736 -0.9001 32 1 3.0062 -3.5815 0.8799 33 1 1.5658 -5.0743 2.1191 34 1 0.3312 -7.1948 2.1466 35 1 -0.9958 -9.4707 -2.1707 36 1 0.1668 -7.4491 -3.3312 37 1 1.5573 -5.0487 -2.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180120485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = 21.267155 kcal Electronic energy + Delta-G solvation = -19691.575915 eV Core-core repulsion = 16627.221406 eV Total energy + Delta-G solvation = -3064.354509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18646 -38.52109 -37.26958 -34.64162 -32.73782 -31.80964 -31.45120 -28.74628 -28.56075 -26.20895 -24.84440 -23.34213 -22.43957 -21.02374 -20.20601 -18.55654 -18.04051 -16.78654 -16.23750 -15.87910 -15.11388 -14.56528 -14.45120 -14.29627 -14.01452 -14.00007 -13.54868 -13.17925 -12.68688 -12.62326 -12.50592 -11.85253 -11.58424 -11.31248 -11.25370 -11.03719 -10.92960 -10.78519 -10.72488 -10.38830 -10.34076 -10.12272 -9.72121 -8.93315 -8.33167 -8.02678 -7.67233 -7.57057 -6.25113 -3.81170 1.18730 1.70231 2.68609 3.06714 3.23623 3.28304 3.32678 3.96740 4.01567 4.21310 4.69479 4.80779 4.93922 5.11895 5.18941 5.28727 5.34498 5.49919 5.59828 5.75504 5.80065 5.86197 5.97849 6.07792 6.16128 6.24089 6.43881 6.51771 6.55508 6.66030 6.74617 6.79214 6.92654 6.99606 7.22931 7.26970 7.45056 7.63177 8.23085 8.57583 9.27374 9.52039 10.09308 10.79969 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042688 B = 0.003274 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.771430 B = 8550.961175 C = 8602.439348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.450 5.450 3 C -0.306 4.306 4 H 0.096 0.904 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.447 3.553 12 O -0.592 6.592 13 C -0.122 4.122 14 C -0.058 4.058 15 C -0.096 4.096 16 C -0.089 4.089 17 C -0.133 4.133 18 C 0.086 3.914 19 N -0.600 5.600 20 H 0.412 0.588 21 C 0.042 3.958 22 C -0.204 4.204 23 C -0.108 4.108 24 C -0.071 4.071 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.267 0.733 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.167 0.833 36 H 0.144 0.856 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -19.447 -2.826 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.434 4.434 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.235 3.765 12 O -0.477 6.477 13 C -0.162 4.162 14 C -0.096 4.096 15 C -0.097 4.097 16 C -0.108 4.108 17 C -0.154 4.154 18 C -0.020 4.020 19 N -0.204 5.204 20 H 0.248 0.752 21 C -0.084 4.084 22 C -0.230 4.230 23 C -0.113 4.113 24 C -0.089 4.089 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.285 -19.373 -2.678 20.259 hybrid contribution -0.220 0.550 0.275 0.654 sum -5.506 -18.822 -2.403 19.758 Atomic orbital electron populations 1.21454 0.81343 0.99809 1.00489 1.43589 1.05418 1.04833 1.63044 1.19598 1.00565 0.84362 1.38894 0.88599 1.25335 0.96670 1.00062 0.95274 1.69990 1.19303 1.29583 1.33532 0.86016 0.79028 0.81091 0.78650 1.19975 1.21018 1.19828 1.20181 0.88076 0.85003 0.83193 1.90501 1.14104 1.87318 1.55806 1.21508 0.98613 0.93327 1.02786 1.20263 0.96407 0.88889 1.04000 1.19580 1.00229 0.97304 0.92568 1.20814 0.97665 0.94272 0.98072 1.19975 1.03589 0.97225 0.94575 1.18260 0.99509 0.88753 0.95500 1.41749 1.50926 1.20854 1.06841 0.75176 1.21746 1.03415 1.00833 0.82387 1.21715 1.06830 0.96103 0.98307 1.19208 1.03137 0.96579 0.92354 1.20201 0.97359 0.93351 0.98003 0.93144 0.90884 0.95553 0.92316 0.90424 0.90623 0.90674 0.90600 0.85553 0.86517 0.81613 0.83812 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 8.45 59.85 0.51 3.10 16 2 N -0.45 -11.88 3.01 -122.19 -0.37 -12.25 16 3 C -0.31 -8.78 9.24 -14.94 -0.14 -8.91 16 4 H 0.10 2.86 7.45 -52.49 -0.39 2.47 16 5 C 0.03 0.79 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -24.16 10.83 55.50 0.60 -23.56 16 7 Si 0.93 21.19 29.57 -169.99 -5.03 16.16 16 8 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.45 11.15 7.63 -10.98 -0.08 11.06 16 12 O -0.59 -16.68 15.70 5.54 0.09 -16.60 16 13 C -0.12 -2.31 4.29 -27.88 -0.12 -2.43 16 14 C -0.06 -0.99 4.62 -27.88 -0.13 -1.11 16 15 C -0.10 -1.42 5.10 -104.99 -0.54 -1.96 16 16 C -0.09 -1.20 9.66 -39.54 -0.38 -1.58 16 17 C -0.13 -1.61 10.08 -39.43 -0.40 -2.01 16 18 C 0.09 1.07 7.28 -83.99 -0.61 0.46 16 19 N -0.60 -5.53 6.07 -10.65 -0.06 -5.60 16 20 H 0.41 2.46 8.96 -40.82 -0.37 2.09 16 21 C 0.04 0.37 11.82 -16.73 -0.20 0.17 16 22 C -0.20 -2.24 11.08 -37.67 -0.42 -2.66 16 23 C -0.11 -1.47 6.37 -105.14 -0.67 -2.14 16 24 C -0.07 -1.01 9.67 -39.64 -0.38 -1.39 16 25 H 0.05 1.18 7.83 -51.93 -0.41 0.78 16 26 H 0.07 1.77 6.80 -51.93 -0.35 1.41 16 27 H 0.03 0.50 6.60 -51.93 -0.34 0.16 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 30 H 0.08 1.32 7.40 -51.93 -0.38 0.94 16 31 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 32 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -33.47 314.64 -8.42 -41.89 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.75 Total: 3.89 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.65 Total: -8.69 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.17 Total: -41.40 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.09 Total: -16.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.47 -8.42 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180120485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.162 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds