Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37088 * 120.00091 * 2 1 4 4 H 1.07997 * 119.99884 * 204.41628 * 3 2 1 5 5 C 1.38947 * 120.00145 * 24.41964 * 3 2 1 6 6 N 1.31417 * 120.00203 * 12.60300 * 5 3 2 7 7 Si 1.86809 * 120.00048 * 192.60512 * 5 3 2 8 8 H 1.48495 * 109.47039 * 59.99736 * 7 5 3 9 9 H 1.48502 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46901 * 299.99736 * 7 5 3 11 11 C 1.34779 * 119.99595 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99589 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00204 * 0.27738 * 11 2 1 14 14 C 1.52994 * 109.46967 * 179.72286 * 13 11 2 15 15 C 1.50703 * 109.46967 * 179.97438 * 14 13 11 16 16 C 1.38823 * 119.73663 * 269.72275 * 15 14 13 17 17 C 1.37748 * 120.66825 * 179.75831 * 16 15 14 18 18 C 1.39126 * 119.77649 * 0.51762 * 17 16 15 19 19 N 1.37689 * 133.50944 * 179.76783 * 18 17 16 20 20 H 0.97002 * 125.06225 * 0.02562 * 19 18 17 21 21 C 1.36827 * 109.87678 * 179.97438 * 19 18 17 22 22 C 1.34244 * 109.92945 * 359.97438 * 21 19 18 23 23 C 1.40664 * 119.33316 * 359.74121 * 18 17 16 24 24 C 1.36626 * 119.73492 * 90.00360 * 15 14 13 25 25 H 1.09003 * 109.47259 * 265.83644 * 1 2 3 26 26 H 1.09002 * 109.47099 * 25.83537 * 1 2 3 27 27 H 1.09002 * 109.47216 * 145.83350 * 1 2 3 28 28 H 0.96993 * 119.99915 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.47249 * 299.72454 * 13 11 2 30 30 H 1.08998 * 109.46726 * 59.72529 * 13 11 2 31 31 H 1.09004 * 109.47212 * 299.99859 * 14 13 11 32 32 H 1.08997 * 109.47675 * 59.99930 * 14 13 11 33 33 H 1.08004 * 119.66447 * 0.02562 * 16 15 14 34 34 H 1.08005 * 120.11298 * 180.28162 * 17 16 15 35 35 H 1.07999 * 125.03433 * 180.02562 * 21 19 18 36 36 H 1.07998 * 126.50192 * 180.02562 * 22 21 19 37 37 H 1.07996 * 120.12062 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1580 1.2290 -0.3866 5 6 1.5490 2.3367 0.4975 6 7 0.4346 2.2489 1.1884 7 14 2.3244 4.0071 0.1840 8 1 2.4051 4.2487 -1.2789 9 1 1.4942 5.0644 0.8149 10 1 3.6901 4.0360 0.7666 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 -0.0052 14 6 2.3795 -3.6352 -0.0103 15 6 1.6259 -4.9403 -0.0154 16 6 1.2871 -5.5445 1.1876 17 6 0.5942 -6.7349 1.2054 18 6 0.2385 -7.3453 0.0069 19 7 -0.4330 -8.5068 -0.3027 20 1 -0.7928 -9.1322 0.3456 21 6 -0.5182 -8.6469 -1.6611 22 6 0.0789 -7.6082 -2.2667 23 6 0.5889 -6.7318 -1.2095 24 6 1.2868 -5.5224 -1.2041 25 1 -0.3634 -0.0746 1.0250 26 1 -0.3633 0.9250 -0.4479 27 1 -0.3634 -0.8503 -0.5771 28 1 0.0150 3.0513 1.5360 29 1 0.7586 -2.5340 0.8844 30 1 0.7587 -2.5261 -0.8955 31 1 3.0062 -3.5736 -0.9001 32 1 3.0062 -3.5815 0.8799 33 1 1.5658 -5.0743 2.1191 34 1 0.3312 -7.1948 2.1466 35 1 -0.9958 -9.4707 -2.1707 36 1 0.1668 -7.4491 -3.3312 37 1 1.5573 -5.0487 -2.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180120485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = 1.269189 kcal Electronic energy + Delta-G solvation = -19692.443092 eV Core-core repulsion = 16627.221406 eV Total energy + Delta-G solvation = -3065.221686 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03874 -40.40421 -38.37621 -36.66279 -34.14392 -33.49272 -32.68401 -29.88399 -29.56473 -28.11293 -26.61135 -24.87249 -23.43875 -21.94261 -21.21017 -20.38964 -18.88194 -18.86526 -17.87173 -17.00409 -16.75965 -16.29918 -15.92792 -15.65629 -15.30328 -15.07718 -14.63402 -14.39826 -14.23404 -13.85879 -13.48815 -13.39919 -13.30114 -13.19844 -13.08528 -12.63899 -12.40941 -12.27304 -12.11418 -12.03047 -11.93114 -11.59729 -10.98877 -10.62200 -10.32453 -9.64862 -9.00096 -8.55956 -8.32689 -5.98163 0.26785 0.68426 1.39912 1.40928 1.51962 1.90255 2.06330 2.29491 2.35037 2.92979 3.10038 3.17699 3.80763 3.92694 4.08521 4.20896 4.28294 4.34669 4.45208 4.51495 4.59518 4.60486 4.77838 4.86361 4.98099 5.00274 5.08612 5.13640 5.26737 5.30186 5.36747 5.45234 5.53804 5.81413 5.88474 5.89903 6.12476 6.28820 6.50879 6.80973 7.18559 7.49683 8.06744 8.70400 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042688 B = 0.003274 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.771430 B = 8550.961175 C = 8602.439348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.466 5.466 3 C -0.348 4.348 4 H 0.070 0.930 5 C -0.003 4.003 6 N -0.898 5.898 7 Si 0.990 3.010 8 H -0.267 1.267 9 H -0.269 1.269 10 H -0.277 1.277 11 C 0.436 3.564 12 O -0.634 6.634 13 C -0.106 4.106 14 C -0.047 4.047 15 C -0.107 4.107 16 C -0.107 4.107 17 C -0.125 4.125 18 C 0.072 3.928 19 N -0.589 5.589 20 H 0.430 0.570 21 C 0.067 3.933 22 C -0.238 4.238 23 C -0.132 4.132 24 C -0.085 4.085 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.273 0.727 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.212 0.788 36 H 0.155 0.845 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 -21.251 -2.905 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.185 5.185 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.205 4.205 6 N -0.536 5.536 7 Si 0.813 3.187 8 H -0.192 1.192 9 H -0.193 1.193 10 H -0.202 1.202 11 C 0.226 3.774 12 O -0.522 6.522 13 C -0.146 4.146 14 C -0.085 4.085 15 C -0.108 4.108 16 C -0.126 4.126 17 C -0.146 4.146 18 C -0.035 4.035 19 N -0.193 5.193 20 H 0.269 0.731 21 C -0.059 4.059 22 C -0.262 4.262 23 C -0.136 4.136 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.229 0.771 36 H 0.173 0.827 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.217 -21.205 -2.742 22.567 hybrid contribution 0.317 0.987 0.290 1.076 sum -6.899 -20.218 -2.452 21.503 Atomic orbital electron populations 1.21413 0.79473 1.00681 1.00506 1.43885 1.06728 1.04778 1.63143 1.19597 1.00466 0.86370 1.41175 0.91219 1.26111 0.97068 1.02998 0.94312 1.70060 1.19747 1.30825 1.33009 0.85060 0.77992 0.76766 0.78887 1.19161 1.19334 1.20235 1.21210 0.88007 0.86522 0.81655 1.90460 1.16221 1.88193 1.57357 1.21435 0.98580 0.90376 1.04200 1.20077 0.95932 0.89796 1.02646 1.19339 1.01317 0.96535 0.93640 1.20918 0.98697 0.95257 0.97732 1.20226 1.02162 0.96415 0.95781 1.18437 0.99964 0.89883 0.95220 1.41838 1.49769 1.20016 1.07696 0.73092 1.22438 1.00894 1.00674 0.81910 1.22003 1.08559 0.96877 0.98784 1.19567 1.03267 0.96667 0.94138 1.20259 0.98141 0.94238 0.97738 0.93913 0.92462 0.91632 0.91696 0.89013 0.88702 0.92066 0.91979 0.84949 0.83786 0.77149 0.82731 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.61 8.45 127.77 1.08 6.69 16 2 N -0.47 -25.21 3.01 -658.88 -1.98 -27.19 16 3 C -0.35 -20.58 9.24 84.04 0.78 -19.81 16 4 H 0.07 4.38 7.45 -2.91 -0.02 4.36 16 5 C 0.00 -0.18 5.04 84.92 0.43 0.25 16 6 N -0.90 -48.96 10.83 21.66 0.23 -48.73 16 7 Si 0.99 43.58 29.57 68.60 2.03 45.61 16 8 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 C 0.44 22.36 7.63 87.66 0.67 23.03 16 12 O -0.63 -37.41 15.70 -3.08 -0.05 -37.46 16 13 C -0.11 -4.02 4.29 29.85 0.13 -3.90 16 14 C -0.05 -1.64 4.62 29.85 0.14 -1.50 16 15 C -0.11 -3.20 5.10 -20.10 -0.10 -3.30 16 16 C -0.11 -2.81 9.66 22.29 0.22 -2.59 16 17 C -0.13 -2.79 10.08 22.37 0.23 -2.57 16 18 C 0.07 1.64 7.28 39.03 0.28 1.92 16 19 N -0.59 -8.74 6.07 -187.61 -1.14 -9.88 16 20 H 0.43 3.35 8.96 -92.71 -0.83 2.52 16 21 C 0.07 0.91 11.82 83.00 0.98 1.89 16 22 C -0.24 -4.71 11.08 23.51 0.26 -4.44 16 23 C -0.13 -3.42 6.37 -20.20 -0.13 -3.54 16 24 C -0.09 -2.44 9.67 22.23 0.22 -2.23 16 25 H 0.04 2.00 7.83 -2.39 -0.02 1.98 16 26 H 0.06 2.77 6.80 -2.39 -0.02 2.76 16 27 H 0.07 2.44 6.60 -2.39 -0.02 2.42 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.09 3.24 8.11 -2.39 -0.02 3.22 16 30 H 0.09 3.24 7.40 -2.39 -0.02 3.22 16 31 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 32 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 33 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.21 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -74.62 314.64 4.52 -70.11 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.25 Total: 17.65 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.17 Total: -10.10 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.89 Total: -85.80 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.05 Total: -37.46 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.62 4.52 -70.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180120485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.378 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds