Wall clock time and date at job start Mon Mar 30 2020 01:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08998 * 109.47054 * 55.00201 * 3 2 1 5 5 C 1.53006 * 109.47015 * 174.99778 * 3 2 1 6 6 C 1.47195 * 109.47199 * 185.00132 * 5 3 2 7 7 N 4.86389 * 126.40306 * 4.97646 * 2 1 3 8 8 N 1.46502 * 109.47345 * 294.99837 * 3 2 1 9 9 C 1.34774 * 119.99623 * 85.00349 * 8 3 2 10 10 O 1.21546 * 120.00362 * 359.97438 * 9 8 3 11 11 C 1.47893 * 119.99985 * 179.97438 * 9 8 3 12 12 C 1.39918 * 120.02141 * 359.72406 * 11 9 8 13 13 C 1.38325 * 120.35748 * 179.71441 * 12 11 9 14 14 C 1.37755 * 120.40899 * 0.56254 * 13 12 11 15 15 C 1.40746 * 120.04079 * 359.71552 * 14 13 12 16 16 C 1.41434 * 120.17787 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00450 * 150.18153 * 16 15 14 18 18 C 1.39939 * 119.99803 * 330.17720 * 16 15 14 19 19 N 1.30831 * 119.99850 * 161.73239 * 18 16 15 20 20 Si 1.86797 * 120.00259 * 341.73299 * 18 16 15 21 21 H 1.48492 * 109.47356 * 95.41144 * 20 18 16 22 22 H 1.48504 * 109.47130 * 215.40928 * 20 18 16 23 23 H 1.48503 * 109.46953 * 335.40952 * 20 18 16 24 24 C 1.38990 * 120.02516 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47211 * 300.00166 * 1 2 3 26 26 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46941 * 59.99669 * 1 2 3 28 28 H 1.08993 * 109.47001 * 120.00103 * 2 1 3 29 29 H 1.09002 * 109.46988 * 240.00580 * 2 1 3 30 30 H 1.08996 * 109.47325 * 305.00421 * 5 3 2 31 31 H 1.09001 * 109.46852 * 65.00659 * 5 3 2 32 32 H 0.96997 * 119.99931 * 264.99451 * 8 3 2 33 33 H 1.08000 * 119.82201 * 359.97438 * 12 11 9 34 34 H 1.08003 * 119.80017 * 180.25396 * 13 12 11 35 35 H 1.08003 * 119.97556 * 179.74395 * 14 13 12 36 36 H 0.96996 * 120.00189 * 180.02562 * 19 18 16 37 37 H 1.07991 * 120.20615 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.0456 2.8303 0.2465 7 7 4.4165 3.9000 0.3396 8 7 1.6525 2.0975 -1.2518 9 6 0.4352 2.6645 -1.3669 10 8 -0.3413 2.6319 -0.4323 11 6 0.0441 3.3262 -2.6304 12 6 0.9397 3.3690 -3.7046 13 6 0.5789 3.9810 -4.8915 14 6 -0.6613 4.5653 -5.0259 15 6 -1.5733 4.5372 -3.9543 16 6 -2.8476 5.1358 -4.0893 17 1 -3.6896 4.7436 -3.5384 18 6 -3.0174 6.2363 -4.9369 19 7 -4.2151 6.5690 -5.3450 20 14 -1.5341 7.2303 -5.4856 21 1 -1.0731 6.7417 -6.8099 22 1 -1.9097 8.6633 -5.5900 23 1 -0.4404 7.0763 -4.4929 24 6 -1.2113 3.9106 -2.7498 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8571 0.8800 1.0113 31 1 4.0030 0.9837 -0.7596 32 1 2.2720 2.1233 -1.9977 33 1 1.9163 2.9182 -3.6079 34 1 1.2758 4.0052 -5.7163 35 1 -0.9341 5.0448 -5.9544 36 1 -4.3328 7.3315 -5.9328 37 1 -1.9044 3.8831 -1.9221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183842198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:36 Heat of formation + Delta-G solvation = -4.481543 kcal Electronic energy + Delta-G solvation = -20093.572036 eV Core-core repulsion = 17028.100979 eV Total energy + Delta-G solvation = -3065.471057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92407 -37.77834 -36.93031 -35.59107 -33.75418 -32.40150 -30.84746 -30.30768 -29.88106 -25.39220 -24.70791 -23.17597 -21.08406 -20.63969 -20.12932 -18.16315 -17.53862 -16.54912 -16.35802 -15.59200 -15.12145 -14.71038 -14.48451 -14.27347 -13.85815 -13.63480 -13.24416 -13.05020 -12.80934 -12.74907 -12.69120 -12.22043 -12.01475 -11.80465 -11.60002 -11.45007 -11.16682 -11.03355 -10.85451 -10.77366 -10.54905 -10.02338 -9.74317 -9.44677 -9.15925 -8.89258 -7.89324 -7.78081 -7.02331 -4.57194 1.88560 2.49722 2.60177 2.64292 3.04306 3.16590 3.25201 3.37125 3.57502 3.75253 3.91966 4.45186 4.49343 4.82408 4.95076 5.10600 5.17909 5.30106 5.33544 5.45348 5.72231 5.81345 5.86241 5.99417 5.99789 6.18778 6.36775 6.53832 6.61955 6.64046 6.68163 6.95717 7.18593 7.37415 7.42313 7.47515 7.71436 7.75143 7.97164 8.26295 8.50981 8.64697 8.70281 9.99798 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.004706 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.403019 B = 5949.004853 C = 6530.555841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.148 3.852 4 H 0.096 0.904 5 C -0.034 4.034 6 C 0.200 3.800 7 N -0.427 5.427 8 N -0.733 5.733 9 C 0.567 3.433 10 O -0.539 6.539 11 C -0.110 4.110 12 C -0.216 4.216 13 C -0.083 4.083 14 C -0.222 4.222 15 C 0.082 3.918 16 C -0.442 4.442 17 H 0.094 0.906 18 C 0.084 3.916 19 N -0.803 5.803 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.135 4.135 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.400 0.600 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.287 0.713 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.946 -11.549 5.722 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.041 3.959 4 H 0.114 0.886 5 C -0.074 4.074 6 C -0.118 4.118 7 N -0.104 5.104 8 N -0.387 5.387 9 C 0.358 3.642 10 O -0.416 6.416 11 C -0.113 4.113 12 C -0.236 4.236 13 C -0.101 4.101 14 C -0.241 4.241 15 C 0.079 3.921 16 C -0.470 4.470 17 H 0.112 0.888 18 C -0.135 4.135 19 N -0.427 5.427 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.167 1.167 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.236 0.764 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.711 -9.806 6.434 17.295 hybrid contribution 0.691 0.137 -0.877 1.124 sum 13.402 -9.669 5.557 17.435 Atomic orbital electron populations 1.21812 0.94285 1.00623 1.03820 1.21934 0.97821 0.94756 1.02312 1.20952 0.90902 0.94725 0.89303 0.88626 1.19665 0.95900 0.85522 1.06320 1.29047 0.93760 0.95195 0.93775 1.81255 1.08863 1.11935 1.08305 1.46030 1.17683 1.59112 1.15876 1.18694 0.80570 0.76809 0.88154 1.90711 1.51220 1.59192 1.40527 1.19426 0.96646 1.02643 0.92574 1.20366 0.98532 1.10013 0.94728 1.20511 0.95835 0.97591 0.96204 1.21179 0.96310 1.07887 0.98742 1.17700 0.92743 0.91520 0.90183 1.19522 0.94592 1.11434 1.21487 0.88825 1.26159 0.97314 0.97509 0.92556 1.69689 1.24124 1.24137 1.24717 0.86325 0.82268 0.77422 0.80376 1.19527 1.21613 1.16734 1.21264 0.94811 1.02220 0.97219 0.92095 0.93583 0.91767 0.90969 0.91410 0.85860 0.86835 0.76405 0.88713 0.88333 0.87911 0.90293 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.51 37.16 0.32 -1.46 16 2 C -0.13 -1.07 5.61 -26.73 -0.15 -1.22 16 3 C 0.15 1.40 2.23 -67.93 -0.15 1.25 16 4 H 0.10 1.12 7.57 -51.93 -0.39 0.72 16 5 C -0.03 -0.20 5.25 -29.52 -0.16 -0.35 16 6 C 0.20 2.14 15.14 -20.76 -0.31 1.82 16 7 N -0.43 -6.21 18.54 42.15 0.78 -5.43 16 8 N -0.73 -9.38 4.68 -54.73 -0.26 -9.64 16 9 C 0.57 10.23 6.34 -12.31 -0.08 10.15 16 10 O -0.54 -10.97 13.47 5.32 0.07 -10.90 16 11 C -0.11 -2.27 5.87 -105.04 -0.62 -2.88 16 12 C -0.22 -4.09 9.55 -38.92 -0.37 -4.46 16 13 C -0.08 -1.68 10.01 -39.73 -0.40 -2.08 16 14 C -0.22 -5.14 7.17 -38.81 -0.28 -5.42 16 15 C 0.08 2.04 5.10 -106.87 -0.55 1.49 16 16 C -0.44 -11.85 9.57 -37.73 -0.36 -12.21 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.08 2.18 5.40 -17.34 -0.09 2.08 16 19 N -0.80 -21.14 13.93 55.55 0.77 -20.37 16 20 Si 0.91 20.50 24.52 -169.99 -4.17 16.33 16 21 H -0.27 -5.80 6.71 56.52 0.38 -5.42 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 24 C -0.13 -3.19 9.34 -38.44 -0.36 -3.55 16 25 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.98 5.64 -51.93 -0.29 0.69 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 4.39 6.62 -40.82 -0.27 4.12 16 33 H 0.09 1.42 6.38 -52.49 -0.33 1.09 16 34 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.10 2.37 4.72 -52.48 -0.25 2.12 16 36 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.12 2.78 7.64 -52.49 -0.40 2.38 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -31.18 312.43 -6.12 -37.30 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.48 Total: 4.83 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.55 Total: -16.84 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 1.30 Total: -35.43 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.17 Total: 16.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.18 -6.12 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.821 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds