Wall clock time and date at job start Mon Mar 30 2020 01:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08998 * 109.47054 * 55.00201 * 3 2 1 5 5 C 1.53006 * 109.47015 * 174.99778 * 3 2 1 6 6 C 1.47195 * 109.47199 * 185.00132 * 5 3 2 7 7 N 4.86389 * 126.40306 * 4.97646 * 2 1 3 8 8 N 1.46502 * 109.47345 * 294.99837 * 3 2 1 9 9 C 1.34774 * 119.99623 * 85.00349 * 8 3 2 10 10 O 1.21546 * 120.00362 * 359.97438 * 9 8 3 11 11 C 1.47893 * 119.99985 * 179.97438 * 9 8 3 12 12 C 1.39918 * 120.02141 * 359.72406 * 11 9 8 13 13 C 1.38325 * 120.35748 * 179.71441 * 12 11 9 14 14 C 1.37755 * 120.40899 * 0.56254 * 13 12 11 15 15 C 1.40746 * 120.04079 * 359.71552 * 14 13 12 16 16 C 1.41434 * 120.17787 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00450 * 150.18153 * 16 15 14 18 18 C 1.39939 * 119.99803 * 330.17720 * 16 15 14 19 19 N 1.30831 * 119.99850 * 161.73239 * 18 16 15 20 20 Si 1.86797 * 120.00259 * 341.73299 * 18 16 15 21 21 H 1.48492 * 109.47356 * 95.41144 * 20 18 16 22 22 H 1.48504 * 109.47130 * 215.40928 * 20 18 16 23 23 H 1.48503 * 109.46953 * 335.40952 * 20 18 16 24 24 C 1.38990 * 120.02516 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47211 * 300.00166 * 1 2 3 26 26 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46941 * 59.99669 * 1 2 3 28 28 H 1.08993 * 109.47001 * 120.00103 * 2 1 3 29 29 H 1.09002 * 109.46988 * 240.00580 * 2 1 3 30 30 H 1.08996 * 109.47325 * 305.00421 * 5 3 2 31 31 H 1.09001 * 109.46852 * 65.00659 * 5 3 2 32 32 H 0.96997 * 119.99931 * 264.99451 * 8 3 2 33 33 H 1.08000 * 119.82201 * 359.97438 * 12 11 9 34 34 H 1.08003 * 119.80017 * 180.25396 * 13 12 11 35 35 H 1.08003 * 119.97556 * 179.74395 * 14 13 12 36 36 H 0.96996 * 120.00189 * 180.02562 * 19 18 16 37 37 H 1.07991 * 120.20615 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.0456 2.8303 0.2465 7 7 4.4165 3.9000 0.3396 8 7 1.6525 2.0975 -1.2518 9 6 0.4352 2.6645 -1.3669 10 8 -0.3413 2.6319 -0.4323 11 6 0.0441 3.3262 -2.6304 12 6 0.9397 3.3690 -3.7046 13 6 0.5789 3.9810 -4.8915 14 6 -0.6613 4.5653 -5.0259 15 6 -1.5733 4.5372 -3.9543 16 6 -2.8476 5.1358 -4.0893 17 1 -3.6896 4.7436 -3.5384 18 6 -3.0174 6.2363 -4.9369 19 7 -4.2151 6.5690 -5.3450 20 14 -1.5341 7.2303 -5.4856 21 1 -1.0731 6.7417 -6.8099 22 1 -1.9097 8.6633 -5.5900 23 1 -0.4404 7.0763 -4.4929 24 6 -1.2113 3.9106 -2.7498 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8571 0.8800 1.0113 31 1 4.0030 0.9837 -0.7596 32 1 2.2720 2.1233 -1.9977 33 1 1.9163 2.9182 -3.6079 34 1 1.2758 4.0052 -5.7163 35 1 -0.9341 5.0448 -5.9544 36 1 -4.3328 7.3315 -5.9328 37 1 -1.9044 3.8831 -1.9221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183842198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:35 Heat of formation + Delta-G solvation = -25.902766 kcal Electronic energy + Delta-G solvation = -20094.500930 eV Core-core repulsion = 17028.100979 eV Total energy + Delta-G solvation = -3066.399951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23238 -39.29924 -38.05598 -36.61887 -35.60534 -33.66277 -32.20041 -31.68994 -31.24015 -27.17203 -25.76896 -24.56873 -22.53662 -21.99720 -21.45717 -19.68094 -18.48554 -18.00530 -17.60018 -17.11899 -16.52386 -16.29938 -15.65690 -15.39273 -15.03654 -14.98487 -14.60716 -14.47975 -14.27959 -13.93953 -13.74390 -13.67114 -13.35984 -12.98816 -12.86665 -12.69740 -12.42558 -12.38257 -12.24792 -11.89312 -11.79438 -11.60877 -11.56862 -11.17995 -10.74343 -10.03512 -9.63389 -9.54923 -8.93776 -6.56978 0.20562 0.73183 1.22247 1.38572 1.45010 1.81188 1.88535 1.99355 2.10882 2.25866 2.65652 3.10090 3.45399 3.79717 3.97537 4.22459 4.24102 4.26274 4.40557 4.55174 4.58874 4.68593 4.80194 4.88596 4.90881 4.98405 5.08334 5.15784 5.18638 5.32405 5.42175 5.58717 5.63529 5.65227 5.71841 5.83601 6.10433 6.29057 6.60719 6.65265 6.70078 6.72992 7.33214 8.15495 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.004706 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.403019 B = 5949.004853 C = 6530.555841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.142 3.858 4 H 0.069 0.931 5 C -0.022 4.022 6 C 0.227 3.773 7 N -0.506 5.506 8 N -0.712 5.712 9 C 0.564 3.436 10 O -0.572 6.572 11 C -0.116 4.116 12 C -0.183 4.183 13 C -0.085 4.085 14 C -0.227 4.227 15 C 0.064 3.936 16 C -0.490 4.490 17 H 0.050 0.950 18 C 0.047 3.953 19 N -0.849 5.849 20 Si 0.966 3.034 21 H -0.245 1.245 22 H -0.278 1.278 23 H -0.256 1.256 24 C -0.167 4.167 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.413 0.587 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.105 0.895 36 H 0.295 0.705 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.174 -14.092 5.109 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.087 0.913 5 C -0.062 4.062 6 C -0.090 4.090 7 N -0.184 5.184 8 N -0.365 5.365 9 C 0.353 3.647 10 O -0.452 6.452 11 C -0.119 4.119 12 C -0.202 4.202 13 C -0.103 4.103 14 C -0.247 4.247 15 C 0.062 3.938 16 C -0.519 4.519 17 H 0.068 0.932 18 C -0.167 4.167 19 N -0.475 5.475 20 Si 0.788 3.212 21 H -0.170 1.170 22 H -0.204 1.204 23 H -0.180 1.180 24 C -0.188 4.188 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.188 0.812 31 H 0.175 0.825 32 H 0.252 0.748 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.980 -12.383 5.814 22.592 hybrid contribution -0.787 0.664 -0.538 1.162 sum 17.193 -11.718 5.277 21.465 Atomic orbital electron populations 1.21798 0.97777 1.00461 1.00797 1.21917 0.94417 0.93957 1.05446 1.21206 0.93628 0.94981 0.86526 0.91269 1.20036 0.92343 0.83238 1.10577 1.29965 0.91883 0.95712 0.91425 1.81297 1.11405 1.14487 1.11180 1.45903 1.15589 1.57377 1.17675 1.18376 0.82159 0.77332 0.86813 1.90710 1.52725 1.60522 1.41269 1.19828 0.95595 1.01638 0.94802 1.21020 0.99747 1.06578 0.92885 1.21050 0.95161 0.95997 0.98044 1.21378 0.97243 1.08041 0.98002 1.17788 0.92666 0.91987 0.91371 1.19462 0.94712 1.14018 1.23723 0.93197 1.26848 0.99865 0.97668 0.92331 1.69721 1.25739 1.25491 1.26564 0.85492 0.78631 0.76602 0.80457 1.16987 1.20409 1.18016 1.21195 0.96435 1.04651 0.96515 0.94434 0.92266 0.95597 0.87033 0.88945 0.81179 0.82503 0.74846 0.83204 0.83667 0.87769 0.89448 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.51 71.98 0.61 -2.80 16 2 C -0.12 -1.37 5.61 30.59 0.17 -1.20 16 3 C 0.14 2.09 2.23 44.99 0.10 2.19 16 4 H 0.07 1.46 7.57 -2.39 -0.02 1.45 16 5 C -0.02 -0.12 5.25 28.79 0.15 0.03 16 6 C 0.23 3.95 15.14 89.44 1.35 5.31 16 7 N -0.51 -13.72 18.54 20.00 0.37 -13.35 16 8 N -0.71 -15.55 4.68 -445.35 -2.08 -17.63 16 9 C 0.56 19.83 6.34 86.80 0.55 20.38 16 10 O -0.57 -24.08 13.47 -3.86 -0.05 -24.13 16 11 C -0.12 -4.67 5.87 -20.13 -0.12 -4.79 16 12 C -0.18 -6.11 9.55 22.70 0.22 -5.89 16 13 C -0.08 -3.07 10.01 22.18 0.22 -2.85 16 14 C -0.23 -10.31 7.17 22.77 0.16 -10.15 16 15 C 0.06 3.37 5.10 -21.32 -0.11 3.26 16 16 C -0.49 -28.57 9.57 23.47 0.22 -28.35 16 17 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 18 C 0.05 2.59 5.40 85.25 0.46 3.05 16 19 N -0.85 -47.50 13.93 21.83 0.30 -47.20 16 20 Si 0.97 42.77 24.52 68.60 1.68 44.45 16 21 H -0.25 -9.82 6.71 99.48 0.67 -9.16 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.26 -11.70 6.86 99.48 0.68 -11.01 16 24 C -0.17 -8.37 9.34 23.01 0.21 -8.16 16 25 H 0.04 0.99 7.84 -2.39 -0.02 0.97 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.02 0.77 5.64 -2.38 -0.01 0.76 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.17 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.16 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.41 6.62 6.62 -92.71 -0.61 6.00 16 33 H 0.15 3.38 6.38 -2.91 -0.02 3.36 16 34 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.10 4.66 4.72 -2.91 -0.01 4.65 16 36 H 0.29 14.72 8.30 -92.71 -0.77 13.95 16 37 H 0.09 4.74 7.64 -2.92 -0.02 4.71 16 Total: -1.00 -79.30 312.43 4.86 -74.44 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.43 Total: 13.39 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.22 Total: -29.96 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.41 Total: -78.19 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.68 Total: 44.45 kcal Total: -79.30 4.86 -74.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds