Wall clock time and date at job start Mon Mar 30 2020 01:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46883 * 2 1 4 4 H 1.09001 * 109.47348 * 304.99425 * 3 2 1 5 5 C 1.52999 * 109.46758 * 184.99909 * 3 2 1 6 6 C 1.47206 * 109.47294 * 174.99745 * 5 3 2 7 7 N 4.86385 * 126.40274 * 355.02396 * 2 1 3 8 8 N 1.46500 * 109.47423 * 64.99721 * 3 2 1 9 9 C 1.34776 * 119.99959 * 274.72381 * 8 3 2 10 10 O 1.21544 * 120.00050 * 0.27524 * 9 8 3 11 11 C 1.47882 * 119.99677 * 180.27791 * 9 8 3 12 12 C 1.39915 * 120.02909 * 359.72165 * 11 9 8 13 13 C 1.38334 * 120.36054 * 179.71733 * 12 11 9 14 14 C 1.37750 * 120.40592 * 0.56434 * 13 12 11 15 15 C 1.40744 * 120.04616 * 359.71694 * 14 13 12 16 16 C 1.41438 * 120.18145 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99938 * 24.43181 * 16 15 14 18 18 C 1.39941 * 119.99954 * 204.44269 * 16 15 14 19 19 N 1.30826 * 120.00237 * 17.87270 * 18 16 15 20 20 Si 1.86798 * 119.99692 * 197.87815 * 18 16 15 21 21 H 1.48499 * 109.47427 * 59.99950 * 20 18 16 22 22 H 1.48504 * 109.46797 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47192 * 299.99333 * 20 18 16 24 24 C 1.39000 * 120.02330 * 180.02562 * 11 9 8 25 25 H 1.09000 * 109.47368 * 300.00414 * 1 2 3 26 26 H 1.09001 * 109.46992 * 60.00573 * 1 2 3 27 27 H 1.09005 * 109.47294 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47368 * 239.99586 * 2 1 3 29 29 H 1.09007 * 109.46612 * 119.99668 * 2 1 3 30 30 H 1.09003 * 109.47078 * 294.99352 * 5 3 2 31 31 H 1.09001 * 109.47453 * 54.99551 * 5 3 2 32 32 H 0.97007 * 119.99430 * 95.00225 * 8 3 2 33 33 H 1.08001 * 119.81904 * 359.97438 * 12 11 9 34 34 H 1.07997 * 119.79364 * 180.26027 * 13 12 11 35 35 H 1.08006 * 119.97605 * 179.74396 * 14 13 12 36 36 H 0.96996 * 120.00331 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.20029 * 359.97173 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 6 4.0456 2.8304 -0.2464 7 7 4.4165 3.9000 -0.3396 8 7 1.6523 2.0976 1.2518 9 6 0.4371 2.6693 1.3649 10 8 -0.3391 2.6371 0.4302 11 6 0.0482 3.3359 2.6264 12 6 0.9391 3.3683 3.7048 13 6 0.5847 3.9950 4.8860 14 6 -0.6534 4.5842 5.0183 15 6 -1.5651 4.5567 3.9465 16 6 -2.8369 5.1612 4.0791 17 1 -2.9847 5.9566 4.7946 18 6 -3.9037 4.7286 3.2835 19 7 -3.8433 3.5677 2.6832 20 14 -5.4138 5.8088 3.0783 21 1 -5.0167 7.1049 2.4721 22 1 -6.3927 5.1280 2.1930 23 1 -6.0324 6.0521 4.4061 24 6 -1.2051 3.9253 2.7439 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.0029 0.9836 0.7597 31 1 3.8570 0.8799 -1.0112 32 1 2.2719 2.1233 1.9977 33 1 1.9104 2.9050 3.6130 34 1 1.2811 4.0182 5.7111 35 1 -0.9244 5.0680 5.9452 36 1 -4.5826 3.2680 2.1314 37 1 -1.8977 3.8988 1.9156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183842214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:38 Heat of formation + Delta-G solvation = -26.110221 kcal Electronic energy + Delta-G solvation = -20246.942768 eV Core-core repulsion = 17180.533821 eV Total energy + Delta-G solvation = -3066.408947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12656 -39.07592 -38.00607 -36.59260 -35.62332 -33.52736 -31.81572 -31.30063 -31.11342 -27.23972 -25.72238 -24.27339 -22.82121 -21.74990 -21.23878 -19.55660 -18.52634 -17.74823 -17.50128 -16.85620 -16.46301 -16.19222 -15.55676 -15.26046 -15.04336 -14.87072 -14.54685 -14.26628 -14.16501 -13.88614 -13.68622 -13.45296 -13.02789 -12.91667 -12.81088 -12.57491 -12.40259 -12.35155 -12.20668 -11.91955 -11.83369 -11.62282 -11.50564 -11.06957 -10.65936 -9.99185 -9.46161 -9.37991 -8.67408 -6.38868 0.41829 1.01331 1.34592 1.46302 1.49068 1.79995 1.87635 2.14794 2.19643 2.33044 2.79800 3.09787 3.70560 3.80499 4.10448 4.22366 4.24505 4.42216 4.55303 4.58482 4.68180 4.78410 4.88315 4.99559 5.07087 5.08593 5.15879 5.19839 5.31103 5.33746 5.52033 5.60551 5.66705 5.87043 5.93046 6.05149 6.29099 6.52431 6.66082 6.74333 6.87449 6.94488 7.42222 8.29092 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.005017 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.470095 B = 5579.933394 C = 6175.379078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.142 3.858 4 H 0.067 0.933 5 C -0.022 4.022 6 C 0.227 3.773 7 N -0.505 5.505 8 N -0.714 5.714 9 C 0.564 3.436 10 O -0.574 6.574 11 C -0.141 4.141 12 C -0.199 4.199 13 C -0.098 4.098 14 C -0.222 4.222 15 C 0.066 3.934 16 C -0.501 4.501 17 H 0.082 0.918 18 C 0.032 3.968 19 N -0.823 5.823 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.132 4.132 25 H 0.021 0.979 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.411 0.589 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.287 0.713 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 -10.257 -3.496 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.036 3.964 4 H 0.085 0.915 5 C -0.061 4.061 6 C -0.089 4.089 7 N -0.183 5.183 8 N -0.368 5.368 9 C 0.353 3.647 10 O -0.455 6.455 11 C -0.144 4.144 12 C -0.218 4.218 13 C -0.116 4.116 14 C -0.241 4.241 15 C 0.064 3.936 16 C -0.530 4.530 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.448 5.448 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.153 4.153 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.249 0.751 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.174 -8.867 -4.458 15.707 hybrid contribution -1.216 0.442 0.298 1.328 sum 10.957 -8.425 -4.161 14.435 Atomic orbital electron populations 1.21774 0.97939 1.00310 1.00638 1.21913 0.94219 0.94095 1.05383 1.21185 0.93684 0.94901 0.86597 0.91513 1.20028 0.92221 0.83323 1.10543 1.29945 0.91864 0.95718 0.91421 1.81272 1.11455 1.14348 1.11190 1.45895 1.15807 1.57580 1.17530 1.18487 0.81928 0.77238 0.87020 1.90690 1.52630 1.60771 1.41408 1.19902 0.96264 1.03446 0.94791 1.20865 0.99558 1.07687 0.93729 1.20923 0.95762 0.97284 0.97597 1.21394 0.96696 1.08142 0.97906 1.17951 0.93701 0.91015 0.90939 1.19836 0.94361 1.18432 1.20373 0.90033 1.26814 1.03398 0.95356 0.92796 1.69875 1.33332 1.17891 1.23729 0.85274 0.76262 0.78699 0.79663 1.18759 1.19463 1.17566 1.21446 0.94760 1.01241 0.97814 0.96002 0.94560 0.92271 0.86845 0.89080 0.82596 0.81054 0.75104 0.84478 0.84577 0.87646 0.90285 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 8.52 71.98 0.61 -3.50 16 2 C -0.12 -1.84 5.61 30.59 0.17 -1.66 16 3 C 0.14 2.67 2.23 44.99 0.10 2.77 16 4 H 0.07 1.69 7.57 -2.39 -0.02 1.68 16 5 C -0.02 -0.18 5.25 28.79 0.15 -0.03 16 6 C 0.23 4.59 15.14 89.44 1.35 5.94 16 7 N -0.50 -14.88 18.54 20.01 0.37 -14.51 16 8 N -0.71 -19.23 4.68 -445.38 -2.08 -21.32 16 9 C 0.56 23.26 6.35 86.80 0.55 23.81 16 10 O -0.57 -27.90 13.48 -3.85 -0.05 -27.95 16 11 C -0.14 -6.58 5.87 -20.13 -0.12 -6.70 16 12 C -0.20 -7.75 9.55 22.70 0.22 -7.53 16 13 C -0.10 -3.92 10.01 22.18 0.22 -3.70 16 14 C -0.22 -10.57 9.78 22.77 0.22 -10.35 16 15 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 16 C -0.50 -27.79 9.05 23.47 0.21 -27.58 16 17 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 18 C 0.03 1.67 5.14 85.26 0.44 2.11 16 19 N -0.82 -46.17 10.95 21.83 0.24 -45.93 16 20 Si 0.98 40.23 29.60 68.60 2.03 42.27 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 24 C -0.13 -7.38 8.24 23.01 0.19 -7.19 16 25 H 0.02 0.78 5.66 -2.39 -0.01 0.77 16 26 H 0.04 1.13 7.85 -2.39 -0.02 1.11 16 27 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.41 8.75 6.62 -92.70 -0.61 8.14 16 33 H 0.14 3.94 6.38 -2.91 -0.02 3.92 16 34 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.29 14.83 8.30 -92.71 -0.77 14.07 16 37 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -79.17 317.71 5.20 -73.97 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.49 Total: 23.53 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.21 Total: -30.06 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.47 Total: -81.76 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.27 kcal Total: -79.17 5.20 -73.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.861 kcal (2) G-P(sol) polarization free energy of solvation -79.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds