Wall clock time and date at job start Mon Mar 30 2020 01:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38366 * 119.84585 * 269.72619 * 17 16 14 19 19 C 1.37952 * 120.14946 * 179.76638 * 18 17 16 20 20 C 1.39634 * 119.84633 * 0.52759 * 19 18 17 21 21 C 1.43197 * 120.14921 * 179.70693 * 20 19 18 22 22 N 9.98497 * 38.24960 * 340.52028 * 2 1 3 23 23 C 1.39634 * 119.70076 * 359.72400 * 20 19 18 24 24 C 1.37955 * 119.84392 * 359.97438 * 23 20 19 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 28 28 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 30 30 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 32 32 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 33 33 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 34 34 H 1.07992 * 119.92565 * 359.97438 * 18 17 16 35 35 H 1.08004 * 120.07591 * 180.25945 * 19 18 17 36 36 H 1.07991 * 120.08341 * 179.97438 * 23 20 19 37 37 H 1.07997 * 119.92529 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4443 3.0996 -2.8749 19 6 -3.7270 3.5926 -2.7527 20 6 -3.9303 4.8920 -2.2836 21 6 -5.2586 5.4124 -2.1602 22 7 -6.3114 5.8277 -2.0614 23 6 -2.8325 5.6816 -1.9357 24 6 -1.5556 5.1738 -2.0569 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0608 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 0.7280 4.1540 -2.8668 33 1 0.0680 2.6143 -3.4687 34 1 -2.2854 2.0967 -3.2424 35 1 -4.5717 2.9765 -3.0234 36 1 -2.9826 6.6875 -1.5726 37 1 -0.7055 5.7835 -1.7886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:15 Heat of formation + Delta-G solvation = 3.828754 kcal Electronic energy + Delta-G solvation = -19822.301241 eV Core-core repulsion = 16757.190546 eV Total energy + Delta-G solvation = -3065.110695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.92142 -38.69879 -36.57977 -35.10639 -32.95006 -32.35815 -31.18870 -30.94353 -28.31846 -26.70657 -23.37386 -22.88484 -22.54503 -20.26939 -19.34335 -19.01836 -17.17768 -16.02823 -15.87016 -15.57617 -15.10432 -14.63743 -14.55173 -14.19396 -14.05619 -13.62999 -13.20311 -13.02829 -12.99279 -12.69916 -12.46595 -12.13813 -11.73782 -11.54250 -11.39496 -11.27597 -11.09839 -10.98333 -10.86055 -10.33881 -10.20508 -9.65893 -9.19980 -9.10525 -9.05689 -8.71468 -8.52680 -7.85348 -6.15553 -4.25083 0.66988 1.27194 2.53611 2.82676 3.20950 3.29181 3.31126 3.35762 3.70456 3.79366 4.16480 4.38323 4.67507 4.69428 4.76260 5.15889 5.23304 5.23505 5.47847 5.51651 5.54306 5.74959 5.88337 6.10619 6.17496 6.36530 6.42743 6.46707 6.63159 6.71936 7.00519 7.17302 7.33935 7.35012 7.42408 7.59083 7.70213 7.87237 8.15503 8.63328 8.74849 9.10491 9.42686 10.89677 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.003563 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.908454 B = 7857.134193 C = 8058.959393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.540 6.540 16 C -0.116 4.116 17 C -0.019 4.019 18 C -0.108 4.108 19 C -0.067 4.067 20 C -0.043 4.043 21 C 0.262 3.738 22 N -0.430 5.430 23 C -0.067 4.067 24 C -0.107 4.107 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 5.621 -11.818 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.419 6.419 16 C -0.156 4.156 17 C -0.021 4.021 18 C -0.126 4.126 19 C -0.088 4.088 20 C -0.046 4.046 21 C -0.053 4.053 22 N -0.106 5.106 23 C -0.088 4.088 24 C -0.125 4.125 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.580 6.132 -10.779 15.080 hybrid contribution 1.760 -0.283 -0.187 1.793 sum -6.820 5.849 -10.967 14.177 Atomic orbital electron populations 1.21833 0.98317 0.97983 1.01226 1.21935 0.92619 0.99862 1.02246 1.18775 0.94148 0.89150 0.81029 0.93334 1.21269 0.90763 1.38973 1.06252 0.92056 1.24893 0.98575 0.94832 0.95419 1.69908 1.35028 1.37616 1.09335 0.86416 0.84917 0.77783 0.78115 1.19749 1.20902 1.20895 1.46504 1.14577 1.56049 1.18579 1.20126 0.82935 0.79678 0.88694 1.90711 1.51254 1.59526 1.40376 1.20880 0.94218 1.01910 0.98581 1.19649 0.94543 0.93421 0.94442 1.20943 0.91401 0.99817 1.00421 1.21084 0.97722 0.93207 0.96785 1.15962 0.85631 0.95442 1.07582 1.25795 0.92846 0.93353 0.93303 1.81232 1.11545 1.08467 1.09338 1.21088 0.91274 0.99337 0.97092 1.20956 0.96877 0.95539 0.99160 0.95946 0.93186 0.94256 0.95075 0.88366 0.92611 0.77963 0.88060 0.88154 0.85052 0.85182 0.85171 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.42 2.24 -69.08 -0.15 6.27 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -13.47 8.73 -34.44 -0.30 -13.77 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -24.07 11.30 55.43 0.63 -23.44 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -13.16 5.02 -54.93 -0.28 -13.43 16 14 C 0.50 8.56 6.39 -10.98 -0.07 8.49 16 15 O -0.54 -11.35 13.17 5.56 0.07 -11.28 16 16 C -0.12 -1.30 5.82 -29.04 -0.17 -1.47 16 17 C -0.02 -0.22 4.38 -104.53 -0.46 -0.68 16 18 C -0.11 -1.14 9.68 -39.64 -0.38 -1.52 16 19 C -0.07 -0.68 9.76 -39.17 -0.38 -1.06 16 20 C -0.04 -0.46 5.73 -106.93 -0.61 -1.07 16 21 C 0.26 3.13 15.33 -22.47 -0.34 2.79 16 22 N -0.43 -6.00 18.54 41.84 0.78 -5.23 16 23 C -0.07 -0.68 9.76 -39.16 -0.38 -1.06 16 24 C -0.11 -1.15 9.68 -39.64 -0.38 -1.53 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 27 H 0.04 0.79 5.64 -51.93 -0.29 0.49 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 6.11 8.54 -40.82 -0.35 5.76 16 32 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -30.49 321.92 -7.20 -37.69 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.67 Total: 4.56 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.56 Total: -8.69 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.13 Total: -42.10 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.49 -7.20 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.524 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds