Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48494 * 109.47402 * 84.86213 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21281 * 119.99504 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00060 * 179.97438 * 14 13 3 17 17 C 1.50703 * 109.46942 * 179.97438 * 16 14 13 18 18 C 1.38357 * 119.84852 * 269.72538 * 17 16 14 19 19 C 1.37948 * 120.15355 * 179.76472 * 18 17 16 20 20 C 1.39636 * 119.84535 * 0.53422 * 19 18 17 21 21 C 1.43194 * 120.15282 * 179.70310 * 20 19 18 22 22 N 9.98490 * 38.47336 * 20.48091 * 2 1 3 23 23 C 1.39634 * 119.69627 * 359.71923 * 20 19 18 24 24 C 1.37953 * 119.84800 * 0.02562 * 23 20 19 25 25 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 27 27 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 28 28 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 29 29 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 30 30 H 0.97005 * 119.99726 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 32 32 H 1.09003 * 109.47503 * 299.99582 * 16 14 13 33 33 H 1.09004 * 109.47380 * 60.00325 * 16 14 13 34 34 H 1.08004 * 119.92660 * 359.97438 * 18 17 16 35 35 H 1.08004 * 120.08035 * 180.25181 * 19 18 17 36 36 H 1.08004 * 120.07759 * 179.97438 * 23 20 19 37 37 H 1.07996 * 119.92597 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3739 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3341 2.6308 0.4659 16 6 0.0668 3.3270 2.6850 17 6 -1.3321 3.8760 2.5714 18 6 -1.5299 5.1686 2.1193 19 6 -2.8079 5.6759 2.0082 20 6 -3.9027 4.8854 2.3639 21 6 -5.2317 5.4076 2.2573 22 7 -6.2872 5.8194 2.1736 23 6 -3.6954 3.5836 2.8244 24 6 -2.4123 3.0872 2.9256 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8251 1.5977 -2.3976 31 1 2.2947 2.1151 1.9977 32 1 0.1070 2.5990 3.4954 33 1 0.7605 4.1415 2.8935 34 1 -0.6820 5.7807 1.8495 35 1 -2.9612 6.6836 1.6513 36 1 -4.5377 2.9670 3.1016 37 1 -2.2505 2.0807 3.2820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = 3.128526 kcal Electronic energy + Delta-G solvation = -19916.094893 eV Core-core repulsion = 16850.953834 eV Total energy + Delta-G solvation = -3065.141059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00218 -38.83242 -36.63145 -35.24385 -33.02395 -32.37391 -31.44584 -31.23677 -28.47701 -27.16336 -23.25446 -22.93478 -22.56392 -20.39873 -19.57455 -19.06612 -17.40989 -16.10122 -15.99609 -15.92926 -15.22297 -14.71430 -14.58255 -14.22086 -14.05313 -13.68472 -13.38260 -13.09100 -13.04528 -12.80863 -12.65468 -12.22774 -11.97652 -11.91997 -11.65510 -11.55947 -11.16436 -10.97999 -10.72244 -10.69047 -10.03648 -9.88062 -9.33195 -9.21589 -9.15575 -8.81255 -8.71702 -8.04720 -6.27766 -4.31611 0.61926 1.22143 2.49477 2.77879 3.20526 3.25106 3.31654 3.38741 3.65009 3.74454 4.09641 4.28890 4.60952 4.64442 4.71409 5.08170 5.18040 5.18382 5.41105 5.46614 5.48143 5.68870 5.83332 6.01646 6.04972 6.05572 6.12741 6.21600 6.41298 6.60536 6.67006 6.75190 6.93914 6.96635 7.24897 7.30816 7.32079 7.53260 8.09225 8.52636 8.72952 8.94307 9.34545 10.83881 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.004039 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.388780 B = 6930.511671 C = 7053.418861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.545 6.545 16 C -0.115 4.115 17 C -0.020 4.020 18 C -0.107 4.107 19 C -0.067 4.067 20 C -0.042 4.042 21 C 0.261 3.739 22 N -0.430 5.430 23 C -0.068 4.068 24 C -0.108 4.108 25 H 0.029 0.971 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.229 3.912 10.578 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.352 5.352 14 C 0.286 3.714 15 O -0.424 6.424 16 C -0.155 4.155 17 C -0.022 4.022 18 C -0.125 4.125 19 C -0.088 4.088 20 C -0.046 4.046 21 C -0.054 4.054 22 N -0.105 5.105 23 C -0.088 4.088 24 C -0.126 4.126 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.243 4.520 9.624 16.983 hybrid contribution 0.390 -0.017 -0.530 0.659 sum -12.853 4.502 9.093 16.375 Atomic orbital electron populations 1.21897 0.97389 0.98795 1.02040 1.22073 0.93665 0.99493 1.01198 1.19158 0.95430 0.89069 0.82855 0.93137 1.21016 0.88730 1.51781 0.95432 0.90361 1.24940 0.94856 0.93676 0.98823 1.69882 1.09789 1.48259 1.24536 0.86911 0.81276 0.79626 0.82243 1.19878 1.21229 1.18338 1.46616 1.14382 1.55932 1.18258 1.20250 0.82877 0.79495 0.88809 1.90700 1.50739 1.59688 1.41266 1.20875 0.94304 1.02065 0.98302 1.19649 0.94536 0.93435 0.94547 1.20972 0.96891 0.95513 0.99172 1.21099 0.91288 0.99369 0.97016 1.15965 0.85649 0.95390 1.07552 1.25793 0.92837 0.93391 0.93341 1.81237 1.11503 1.08466 1.09287 1.21084 0.97700 0.93190 0.96859 1.20936 0.91404 0.99823 1.00414 0.95184 0.93126 0.93135 0.92177 0.93041 0.92211 0.77360 0.87984 0.87831 0.84932 0.85146 0.85182 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.53 37.16 0.32 -2.38 16 2 C -0.13 -2.57 5.59 -26.73 -0.15 -2.71 16 3 C 0.24 5.24 1.89 -69.08 -0.13 5.11 16 4 H 0.05 1.24 4.73 -51.92 -0.25 0.99 16 5 C -0.53 -13.59 9.05 -34.44 -0.31 -13.90 16 6 H 0.08 2.11 8.06 -52.48 -0.42 1.69 16 7 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 8 N -0.89 -25.47 13.96 55.43 0.77 -24.69 16 9 Si 0.87 20.96 26.99 -169.99 -4.59 16.37 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.26 -6.13 6.82 56.52 0.39 -5.74 16 13 N -0.70 -12.47 5.03 -54.93 -0.28 -12.74 16 14 C 0.50 8.11 6.42 -10.99 -0.07 8.04 16 15 O -0.55 -10.79 13.18 5.56 0.07 -10.72 16 16 C -0.12 -1.23 5.82 -29.04 -0.17 -1.40 16 17 C -0.02 -0.22 4.38 -104.53 -0.46 -0.68 16 18 C -0.11 -1.11 9.68 -39.64 -0.38 -1.49 16 19 C -0.07 -0.65 9.76 -39.17 -0.38 -1.04 16 20 C -0.04 -0.43 5.73 -106.93 -0.61 -1.05 16 21 C 0.26 3.04 15.33 -22.48 -0.34 2.69 16 22 N -0.43 -5.87 18.54 41.84 0.78 -5.09 16 23 C -0.07 -0.64 9.76 -39.17 -0.38 -1.03 16 24 C -0.11 -1.07 9.68 -39.64 -0.38 -1.46 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.91 5.63 -51.93 -0.29 0.62 16 27 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.39 6.02 8.59 -40.82 -0.35 5.66 16 32 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -31.38 321.84 -6.62 -38.00 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.67 Total: 3.21 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.56 Total: -9.18 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 1.27 Total: -42.53 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.59 Total: 16.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.38 -6.62 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.128 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds