Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48494 * 109.47402 * 84.86213 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21281 * 119.99504 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00060 * 179.97438 * 14 13 3 17 17 C 1.50703 * 109.46942 * 179.97438 * 16 14 13 18 18 C 1.38357 * 119.84852 * 269.72538 * 17 16 14 19 19 C 1.37948 * 120.15355 * 179.76472 * 18 17 16 20 20 C 1.39636 * 119.84535 * 0.53422 * 19 18 17 21 21 C 1.43194 * 120.15282 * 179.70310 * 20 19 18 22 22 N 9.98490 * 38.47336 * 20.48091 * 2 1 3 23 23 C 1.39634 * 119.69627 * 359.71923 * 20 19 18 24 24 C 1.37953 * 119.84800 * 0.02562 * 23 20 19 25 25 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 27 27 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 28 28 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 29 29 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 30 30 H 0.97005 * 119.99726 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 32 32 H 1.09003 * 109.47503 * 299.99582 * 16 14 13 33 33 H 1.09004 * 109.47380 * 60.00325 * 16 14 13 34 34 H 1.08004 * 119.92660 * 359.97438 * 18 17 16 35 35 H 1.08004 * 120.08035 * 180.25181 * 19 18 17 36 36 H 1.08004 * 120.07759 * 179.97438 * 23 20 19 37 37 H 1.07996 * 119.92597 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3739 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3341 2.6308 0.4659 16 6 0.0668 3.3270 2.6850 17 6 -1.3321 3.8760 2.5714 18 6 -1.5299 5.1686 2.1193 19 6 -2.8079 5.6759 2.0082 20 6 -3.9027 4.8854 2.3639 21 6 -5.2317 5.4076 2.2573 22 7 -6.2872 5.8194 2.1736 23 6 -3.6954 3.5836 2.8244 24 6 -2.4123 3.0872 2.9256 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8251 1.5977 -2.3976 31 1 2.2947 2.1151 1.9977 32 1 0.1070 2.5990 3.4954 33 1 0.7605 4.1415 2.8935 34 1 -0.6820 5.7807 1.8495 35 1 -2.9612 6.6836 1.6513 36 1 -4.5377 2.9670 3.1016 37 1 -2.2505 2.0807 3.2820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -16.045816 kcal Electronic energy + Delta-G solvation = -19916.926355 eV Core-core repulsion = 16850.953834 eV Total energy + Delta-G solvation = -3065.972521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02330 -39.95543 -37.61402 -36.82372 -34.33401 -33.97596 -32.87250 -31.96466 -29.79597 -28.58116 -24.78129 -23.76828 -23.66588 -21.82040 -21.08866 -19.85705 -19.16436 -17.55542 -17.37087 -16.82485 -16.40313 -15.92227 -15.80755 -15.44873 -15.07212 -14.75126 -14.68839 -14.39053 -14.19066 -13.96826 -13.80958 -13.70833 -13.62820 -13.06175 -12.91246 -12.74798 -12.47908 -12.36723 -12.25309 -11.89472 -11.84743 -11.60682 -11.14806 -10.80147 -10.60238 -9.88154 -9.65871 -9.57207 -8.35944 -6.40556 -0.18759 0.49574 1.30661 1.35971 1.45922 1.58826 1.90047 1.97626 2.29292 2.62319 2.87862 2.98023 3.14339 3.78419 3.93678 4.03155 4.26054 4.38747 4.44255 4.46373 4.49262 4.63828 4.74563 4.74872 4.89199 4.94564 5.13119 5.17865 5.29167 5.32835 5.35876 5.38527 5.48699 5.63104 5.65614 5.88860 5.93671 6.19376 6.41860 6.66281 7.06949 7.26301 7.65466 8.79154 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.004039 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.388780 B = 6930.511671 C = 7053.418861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.243 3.757 4 H 0.028 0.972 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.923 3.077 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.256 1.256 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.103 4.103 17 C -0.034 4.034 18 C -0.117 4.117 19 C -0.068 4.068 20 C -0.052 4.052 21 C 0.282 3.718 22 N -0.470 5.470 23 C -0.066 4.066 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.406 0.594 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 3.824 11.869 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C 0.138 3.862 4 H 0.046 0.954 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.180 1.180 13 N -0.356 5.356 14 C 0.288 3.712 15 O -0.462 6.462 16 C -0.142 4.142 17 C -0.036 4.036 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.055 4.055 21 C -0.032 4.032 22 N -0.146 5.146 23 C -0.087 4.087 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.241 0.759 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.428 4.441 10.948 18.647 hybrid contribution 0.753 0.008 -0.846 1.132 sum -13.675 4.449 10.102 17.574 Atomic orbital electron populations 1.21759 0.95650 1.00123 1.01383 1.21985 0.95125 0.98162 1.01007 1.18827 0.92854 0.90199 0.84288 0.95425 1.21273 0.90616 1.49812 0.94407 0.92420 1.25578 0.95616 0.94213 1.01346 1.69983 1.11261 1.50766 1.25132 0.86105 0.79957 0.79248 0.79816 1.19998 1.20845 1.18029 1.46336 1.15733 1.56372 1.17110 1.21102 0.81445 0.78366 0.90301 1.90691 1.51567 1.60766 1.43164 1.20850 0.94659 1.03094 0.95579 1.19808 0.94829 0.93819 0.95101 1.21176 0.97387 0.95797 0.99175 1.21288 0.91014 1.00049 0.96503 1.16079 0.84985 0.96029 1.08437 1.25958 0.92739 0.92346 0.92125 1.81257 1.12705 1.09793 1.10876 1.21319 0.98391 0.92937 0.96013 1.21182 0.91201 1.00520 1.00105 0.92818 0.92313 0.95205 0.93820 0.91828 0.92202 0.75875 0.84752 0.85480 0.83995 0.83720 0.83384 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.53 71.98 0.61 -4.04 16 2 C -0.12 -4.90 5.59 30.59 0.17 -4.73 16 3 C 0.24 10.50 1.89 44.25 0.08 10.58 16 4 H 0.03 1.34 4.73 -2.38 -0.01 1.33 16 5 C -0.52 -26.78 9.05 25.60 0.23 -26.55 16 6 H 0.06 3.14 8.06 -2.91 -0.02 3.11 16 7 C 0.03 1.78 5.47 84.65 0.46 2.24 16 8 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 9 Si 0.92 43.60 26.99 68.60 1.85 45.45 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.26 -11.84 6.82 99.48 0.68 -11.16 16 13 N -0.71 -23.65 5.03 -446.10 -2.24 -25.89 16 14 C 0.50 14.91 6.42 87.66 0.56 15.47 16 15 O -0.58 -21.91 13.18 -3.03 -0.04 -21.95 16 16 C -0.10 -1.80 5.82 29.10 0.17 -1.63 16 17 C -0.03 -0.64 4.38 -19.81 -0.09 -0.72 16 18 C -0.12 -2.13 9.68 22.23 0.22 -1.92 16 19 C -0.07 -1.19 9.76 22.54 0.22 -0.97 16 20 C -0.05 -0.96 5.73 -21.36 -0.12 -1.09 16 21 C 0.28 6.21 15.33 88.33 1.35 7.57 16 22 N -0.47 -12.53 18.54 19.00 0.35 -12.18 16 23 C -0.07 -1.09 9.76 22.54 0.22 -0.87 16 24 C -0.11 -1.87 9.68 22.23 0.22 -1.66 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.96 5.63 -2.39 -0.01 1.95 16 27 H 0.03 1.16 7.89 -2.39 -0.02 1.14 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 31 H 0.41 11.54 8.59 -92.70 -0.80 10.74 16 32 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 34 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -68.29 321.84 4.80 -63.49 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.27 Total: 13.46 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.31 Total: -8.31 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -1.59 Total: -92.15 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.04 Total: -21.95 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.85 Total: 45.45 kcal Total: -68.29 4.80 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.448 kcal (2) G-P(sol) polarization free energy of solvation -68.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds