Wall clock time and date at job start Mon Mar 30 2020 01:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47017 * 2 1 4 4 C 1.50701 * 109.46897 * 240.00401 * 2 1 3 5 5 O 1.21291 * 119.99835 * 239.99664 * 4 2 1 6 6 N 1.34771 * 120.00042 * 59.99965 * 4 2 1 7 7 C 1.37097 * 120.00118 * 179.97438 * 6 4 2 8 8 H 1.07994 * 120.00287 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99865 * 179.97438 * 7 6 4 10 10 N 1.31403 * 120.00430 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99734 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47266 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46910 * 119.99881 * 11 9 7 14 14 H 1.48501 * 109.47469 * 239.99897 * 11 9 7 15 15 C 1.50698 * 109.47458 * 120.00306 * 2 1 3 16 16 C 1.34243 * 126.49834 * 60.33818 * 15 2 1 17 17 N 1.36834 * 109.92898 * 180.14878 * 16 15 2 18 18 C 1.46499 * 125.06362 * 179.81278 * 17 16 15 19 19 C 1.37685 * 109.87232 * 359.55468 * 17 16 15 20 20 C 1.39121 * 133.50851 * 180.26285 * 19 17 16 21 21 C 1.37751 * 119.78113 * 179.97438 * 20 19 17 22 22 C 1.38834 * 120.66586 * 0.02562 * 21 20 19 23 23 C 1.36621 * 120.52583 * 359.97438 * 22 21 20 24 24 C 1.39627 * 119.76894 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47405 * 59.99243 * 1 2 3 26 26 H 1.09000 * 109.47345 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46925 * 299.99474 * 1 2 3 28 28 H 0.97008 * 120.00077 * 359.97438 * 6 4 2 29 29 H 0.97000 * 120.00531 * 180.02562 * 10 9 7 30 30 H 1.08001 * 125.03905 * 359.97438 * 16 15 2 31 31 H 1.09002 * 109.47391 * 269.69876 * 18 17 16 32 32 H 1.09001 * 109.46813 * 149.69932 * 18 17 16 33 33 H 1.09004 * 109.47041 * 29.70059 * 18 17 16 34 34 H 1.08004 * 120.11330 * 0.02562 * 20 19 17 35 35 H 1.08004 * 119.66867 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.73825 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.11799 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2498 -2.4545 7 6 2.1640 -0.8957 -3.5740 8 1 2.7855 -1.7733 -3.4751 9 6 1.8278 -0.4212 -4.8360 10 7 1.0720 0.6469 -4.9565 11 14 2.4516 -1.3008 -6.3613 12 1 3.2774 -2.4670 -5.9573 13 1 1.2971 -1.7688 -7.1697 14 1 3.2756 -0.3665 -7.1695 15 6 2.0324 -0.7104 1.2304 16 6 1.7951 -1.9880 1.5676 17 7 2.4116 -2.2795 2.7538 18 6 2.3663 -3.5789 3.4289 19 6 3.0858 -1.1713 3.2156 20 6 3.8634 -0.9239 4.3424 21 6 4.4191 0.3225 4.5300 22 6 4.2108 1.3371 3.6054 23 6 3.4506 1.1159 2.4919 24 6 2.8778 -0.1400 2.2818 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.1486 0.5387 -2.5435 29 1 0.8369 0.9780 -5.8374 30 1 1.2028 -2.6820 0.9898 31 1 1.5160 -3.6049 4.1104 32 1 3.2877 -3.7282 3.9917 33 1 2.2615 -4.3704 2.6868 34 1 4.0316 -1.7067 5.0672 35 1 5.0228 0.5125 5.4051 36 1 4.6533 2.3088 3.7676 37 1 3.2933 1.9098 1.7767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184514481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:15 Heat of formation + Delta-G solvation = -1.644538 kcal Electronic energy + Delta-G solvation = -20309.053384 eV Core-core repulsion = 17243.705349 eV Total energy + Delta-G solvation = -3065.348035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26756 -40.12857 -37.87607 -36.04770 -35.28257 -33.33118 -32.20001 -31.15412 -29.49622 -27.14008 -27.03407 -24.77988 -23.47373 -22.29502 -21.59095 -20.19829 -19.53621 -17.84138 -17.65016 -17.09581 -16.51985 -16.29663 -16.08832 -15.80816 -15.52909 -14.84047 -14.71394 -14.50895 -14.35488 -13.77030 -13.59833 -13.49453 -13.35363 -13.10738 -12.91010 -12.74666 -12.47454 -12.30673 -12.12009 -12.03235 -12.00917 -11.60799 -11.48631 -10.45221 -10.16780 -9.98459 -9.01200 -8.46938 -8.37609 -5.93268 0.28285 0.77600 1.36672 1.41226 1.55325 1.76669 2.00562 2.09290 2.31873 3.02925 3.22027 3.36450 3.80502 3.89479 3.92886 4.13720 4.25943 4.32102 4.35386 4.44328 4.45935 4.60388 4.64657 4.70839 4.81274 4.84659 4.98356 5.03010 5.11626 5.24406 5.38560 5.42913 5.63937 5.76444 5.89271 5.97803 6.04443 6.34247 6.51123 6.62352 7.14619 7.59616 8.15108 8.73099 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.004423 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.788962 B = 6329.173725 C = 6639.246478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.019 4.019 3 H 0.093 0.907 4 C 0.447 3.553 5 O -0.626 6.626 6 N -0.571 5.571 7 C -0.333 4.333 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.920 5.920 11 Si 0.992 3.008 12 H -0.275 1.275 13 H -0.269 1.269 14 H -0.271 1.271 15 C -0.167 4.167 16 C 0.072 3.928 17 N -0.491 5.491 18 C 0.075 3.925 19 C 0.076 3.924 20 C -0.134 4.134 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.093 4.093 24 C -0.129 4.129 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.396 0.604 29 H 0.277 0.723 30 H 0.162 0.838 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -1.132 18.469 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.041 4.041 3 H 0.111 0.889 4 C 0.235 3.765 5 O -0.513 6.513 6 N -0.208 5.208 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.561 5.561 11 Si 0.815 3.185 12 H -0.199 1.199 13 H -0.194 1.194 14 H -0.196 1.196 15 C -0.174 4.174 16 C -0.054 4.054 17 N -0.175 5.175 18 C -0.066 4.066 19 C -0.030 4.030 20 C -0.154 4.154 21 C -0.123 4.123 22 C -0.170 4.170 23 C -0.112 4.112 24 C -0.133 4.133 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.230 0.770 29 H 0.087 0.913 30 H 0.179 0.821 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.990 -2.040 18.512 18.651 hybrid contribution -0.083 -0.056 -1.346 1.350 sum 0.907 -2.095 17.166 17.317 Atomic orbital electron populations 1.21703 0.91427 1.02323 1.02920 1.19375 0.97606 0.98746 0.88388 0.88864 1.20804 0.83974 0.86611 0.85107 1.90465 1.43381 1.30273 1.87175 1.41933 1.46419 1.27960 1.04447 1.19700 1.30415 1.11186 0.84912 0.90507 1.26012 0.96709 0.97055 1.01393 1.69677 1.36993 1.23524 1.25940 0.84895 0.78217 0.78027 0.77319 1.19947 1.19438 1.19645 1.19739 1.05966 0.94926 0.96742 1.21493 0.99872 0.96401 0.87608 1.43955 1.43283 1.10924 1.19297 1.22174 1.04597 0.81282 0.98499 1.18616 0.99603 0.87099 0.97688 1.20327 0.99955 0.99205 0.95953 1.21176 0.99394 0.91705 0.99982 1.20921 1.00692 1.00779 0.94617 1.20500 0.97423 0.94807 0.98423 1.19394 1.02507 0.95262 0.96176 0.92074 0.92905 0.89882 0.77001 0.91313 0.82108 0.89543 0.88756 0.89495 0.83986 0.82620 0.83754 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.97 71.98 0.65 -3.44 16 2 C -0.02 -0.74 3.12 -12.29 -0.04 -0.78 16 3 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 4 C 0.45 22.50 7.05 87.66 0.62 23.11 16 5 O -0.63 -36.06 14.94 -3.06 -0.05 -36.11 16 6 N -0.57 -30.43 5.18 -306.99 -1.59 -32.02 16 7 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 10 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 11 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 C -0.17 -6.35 4.64 -18.63 -0.09 -6.44 16 16 C 0.07 2.55 9.95 83.00 0.83 3.38 16 17 N -0.49 -14.63 3.18 -539.26 -1.71 -16.34 16 18 C 0.07 1.41 11.03 127.77 1.41 2.82 16 19 C 0.08 2.37 6.81 39.03 0.27 2.63 16 20 C -0.13 -3.22 9.96 22.37 0.22 -3.00 16 21 C -0.10 -2.23 10.01 22.30 0.22 -2.00 16 22 C -0.15 -3.66 9.97 22.03 0.22 -3.44 16 23 C -0.09 -2.85 10.05 22.23 0.22 -2.62 16 24 C -0.13 -4.54 6.35 -20.20 -0.13 -4.67 16 25 H 0.06 1.98 7.56 -2.39 -0.02 1.97 16 26 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 27 H 0.08 2.24 8.14 -2.38 -0.02 2.23 16 28 H 0.40 20.13 7.32 -92.70 -0.68 19.45 16 29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.16 5.56 8.06 -2.91 -0.02 5.54 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.09 1.54 8.13 -2.38 -0.02 1.52 16 34 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -72.82 319.63 5.04 -67.78 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.40 Total: 34.39 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 5.68 Total: -13.20 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -3.02 Total: -98.59 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.05 Total: -36.11 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.82 5.04 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184514481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.132 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds