Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46910 * 2 1 4 4 C 1.50698 * 109.47347 * 119.99728 * 2 1 3 5 5 O 1.21284 * 119.99846 * 119.99916 * 4 2 1 6 6 N 1.34780 * 119.99875 * 300.00723 * 4 2 1 7 7 C 1.37095 * 119.99755 * 180.02562 * 6 4 2 8 8 H 1.08006 * 120.00232 * 359.97438 * 7 6 4 9 9 C 1.38956 * 119.99987 * 179.97438 * 7 6 4 10 10 N 1.31406 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99945 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47030 * 59.99652 * 11 9 7 13 13 H 1.48500 * 109.46984 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47636 * 299.99865 * 11 9 7 15 15 C 1.50695 * 109.47423 * 240.00374 * 2 1 3 16 16 C 1.34241 * 126.49588 * 299.97496 * 15 2 1 17 17 N 1.36833 * 109.93022 * 180.02562 * 16 15 2 18 18 C 1.46497 * 125.06377 * 179.97438 * 17 16 15 19 19 C 1.37688 * 109.87243 * 0.02562 * 17 16 15 20 20 C 1.39129 * 133.50461 * 179.71370 * 19 17 16 21 21 C 1.37747 * 119.77762 * 179.91587 * 20 19 17 22 22 C 1.38834 * 120.66433 * 0.37593 * 21 20 19 23 23 C 1.36628 * 120.53209 * 359.83415 * 22 21 20 24 24 C 1.39629 * 119.76327 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47361 * 299.99778 * 1 2 3 27 27 H 1.09001 * 109.47310 * 59.99931 * 1 2 3 28 28 H 0.96998 * 120.00506 * 359.97438 * 6 4 2 29 29 H 0.96999 * 120.00155 * 179.97438 * 10 9 7 30 30 H 1.08002 * 125.03847 * 0.02562 * 16 15 2 31 31 H 1.08997 * 109.47680 * 270.02452 * 18 17 16 32 32 H 1.09002 * 109.47387 * 30.02992 * 18 17 16 33 33 H 1.09007 * 109.46781 * 150.02391 * 18 17 16 34 34 H 1.08001 * 120.10753 * 0.28870 * 20 19 17 35 35 H 1.07998 * 119.66462 * 180.16293 * 21 20 19 36 36 H 1.07999 * 119.73036 * 179.80369 * 22 21 20 37 37 H 1.07997 * 120.11684 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1641 -0.8958 3.5739 8 1 2.7852 -1.7739 3.4749 9 6 1.8288 -0.4208 4.8360 10 7 1.0736 0.6478 4.9566 11 14 2.4516 -1.3013 6.3612 12 1 3.9366 -1.3017 6.3608 13 1 1.9575 -0.6006 7.5737 14 1 1.9563 -2.7013 6.3616 15 6 2.0324 -0.7103 -1.2304 16 6 1.7902 -1.9861 -1.5707 17 7 2.4117 -2.2793 -2.7540 18 6 2.3668 -3.5788 -3.4288 19 6 3.0865 -1.1713 -3.2153 20 6 3.8686 -0.9254 -4.3394 21 6 4.4216 0.3219 -4.5285 22 6 4.2132 1.3364 -3.6040 23 6 3.4522 1.1156 -2.4910 24 6 2.8787 -0.1401 -2.2813 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.1492 0.5389 2.5436 29 1 0.8392 0.9792 5.8375 30 1 1.1933 -2.6786 -0.9957 31 1 3.1946 -4.1972 -3.0818 32 1 1.4229 -4.0741 -3.2011 33 1 2.4495 -3.4319 -4.5057 34 1 4.0365 -1.7082 -5.0643 35 1 5.0262 0.5115 -5.4031 36 1 4.6566 2.3078 -3.7657 37 1 3.2948 1.9095 -1.7759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184514500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = 17.986378 kcal Electronic energy + Delta-G solvation = -20307.613461 eV Core-core repulsion = 17243.116687 eV Total energy + Delta-G solvation = -3064.496775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10046 -38.24644 -36.80072 -34.22396 -33.61351 -31.57238 -30.68577 -30.13244 -28.35437 -25.96079 -25.13414 -23.28614 -22.34430 -21.18644 -20.01740 -18.41489 -17.76995 -16.53786 -16.31157 -15.56228 -15.21373 -15.07580 -14.52346 -14.03170 -13.88726 -13.74637 -13.53206 -12.99095 -12.82014 -12.58209 -12.46907 -12.34725 -11.67970 -11.55816 -11.50135 -11.22737 -11.05692 -10.96581 -10.58674 -10.50099 -10.40651 -10.12821 -9.44107 -9.27299 -8.22911 -7.90320 -7.86772 -7.21879 -6.36048 -3.76509 1.39567 1.86322 3.00307 3.10396 3.23077 3.28326 3.33148 4.00461 4.13981 4.24217 4.79095 4.88573 4.99304 5.17186 5.18838 5.26948 5.30966 5.33500 5.42560 5.49010 5.68321 5.74411 5.86512 5.93139 5.98991 6.11591 6.17522 6.34652 6.36810 6.55202 6.67101 6.75752 6.85829 7.03910 7.17697 7.49995 7.59884 7.60717 8.12506 8.68528 9.23898 9.62535 10.14638 10.81682 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026728 B = 0.004423 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.323086 B = 6328.745733 C = 6638.263662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.030 4.030 3 H 0.086 0.914 4 C 0.448 3.552 5 O -0.589 6.589 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.101 0.899 9 C 0.023 3.977 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.275 1.275 15 C -0.134 4.134 16 C 0.080 3.920 17 N -0.491 5.491 18 C 0.083 3.917 19 C 0.094 3.906 20 C -0.132 4.132 21 C -0.108 4.108 22 C -0.155 4.155 23 C -0.068 4.068 24 C -0.095 4.095 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.393 0.607 29 H 0.271 0.729 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -1.195 -16.886 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 H 0.104 0.896 4 C 0.234 3.766 5 O -0.473 6.473 6 N -0.199 5.199 7 C -0.429 4.429 8 H 0.119 0.881 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.141 4.141 16 C -0.044 4.044 17 N -0.175 5.175 18 C -0.059 4.059 19 C -0.012 4.012 20 C -0.153 4.153 21 C -0.127 4.127 22 C -0.174 4.174 23 C -0.086 4.086 24 C -0.100 4.100 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.226 0.774 29 H 0.081 0.919 30 H 0.182 0.818 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.368 -2.104 -16.896 17.031 hybrid contribution 0.047 -0.054 0.950 0.952 sum 0.414 -2.158 -15.947 16.097 Atomic orbital electron populations 1.21761 0.93579 1.02126 1.01825 1.19485 0.95927 0.99205 0.90670 0.89570 1.19845 0.85366 0.87235 0.84160 1.90506 1.41911 1.28486 1.86416 1.41864 1.46020 1.27777 1.04241 1.19652 1.29150 1.10788 0.83263 0.88136 1.25228 0.97002 0.96509 0.99147 1.69601 1.36866 1.22908 1.25010 0.85954 0.79123 0.79146 0.80195 1.19983 1.20995 1.20002 1.19650 1.04135 0.93984 0.96326 1.21459 0.99626 0.96629 0.86652 1.43718 1.44040 1.09572 1.20180 1.21848 1.03231 0.83199 0.97606 1.18222 0.98862 0.87131 0.96957 1.19907 1.01020 0.97889 0.96485 1.20680 1.00233 0.92490 0.99337 1.20529 1.02024 0.99233 0.95627 1.20287 0.96131 0.95170 0.97040 1.19125 1.01494 0.93750 0.95596 0.92633 0.91797 0.92520 0.77388 0.91891 0.81827 0.91563 0.90113 0.90610 0.86931 0.86337 0.86459 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.97 37.16 0.33 -1.84 16 2 C -0.03 -0.58 3.12 -92.93 -0.29 -0.87 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.45 10.84 7.06 -10.98 -0.08 10.76 16 5 O -0.59 -16.22 14.95 5.55 0.08 -16.14 16 6 N -0.56 -14.48 5.18 -10.96 -0.06 -14.53 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 10 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 C -0.13 -2.50 4.63 -102.72 -0.48 -2.97 16 16 C 0.08 1.39 9.96 -16.73 -0.17 1.22 16 17 N -0.49 -7.46 3.18 -121.80 -0.39 -7.85 16 18 C 0.08 0.85 11.03 59.85 0.66 1.51 16 19 C 0.09 1.51 6.81 -83.98 -0.57 0.94 16 20 C -0.13 -1.78 9.97 -39.43 -0.39 -2.17 16 21 C -0.11 -1.35 10.01 -39.54 -0.40 -1.75 16 22 C -0.15 -2.05 9.97 -39.94 -0.40 -2.45 16 23 C -0.07 -1.05 10.05 -39.64 -0.40 -1.45 16 24 C -0.09 -1.67 6.35 -105.14 -0.67 -2.33 16 25 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16 26 H 0.06 1.03 7.56 -51.93 -0.39 0.63 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 9.67 7.32 -40.82 -0.30 9.37 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.16 2.70 8.06 -52.49 -0.42 2.28 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -32.97 319.65 -7.77 -40.74 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.84 Total: 10.16 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.08 Total: -9.45 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.28 Total: -46.39 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.08 Total: -16.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.97 -7.77 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184514500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.727 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds