Wall clock time and date at job start Mon Mar 30 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46989 * 2 1 4 4 N 1.46498 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.36637 * 125.07410 * 265.02558 * 4 3 2 6 6 C 1.34718 * 109.92620 * 179.97438 * 5 4 3 7 7 C 1.46201 * 107.01158 * 359.97438 * 6 5 4 8 8 C 1.40030 * 133.88954 * 180.02562 * 7 6 5 9 9 C 1.36302 * 119.88385 * 179.97438 * 8 7 6 10 10 C 1.39746 * 120.44059 * 0.02562 * 9 8 7 11 11 N 1.39052 * 119.76984 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00223 * 213.78253 * 11 10 9 13 13 O 1.21843 * 120.00026 * 5.28495 * 12 11 10 14 14 C 1.41352 * 119.99997 * 185.27777 * 12 11 10 15 15 H 1.07995 * 120.00274 * 0.02562 * 14 12 11 16 16 C 1.40134 * 119.99870 * 180.02562 * 14 12 11 17 17 N 1.30637 * 120.00069 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00245 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47449 * 119.99796 * 18 16 14 21 21 H 1.48496 * 109.47093 * 239.99924 * 18 16 14 22 22 C 1.38934 * 120.46423 * 359.97438 * 10 9 8 23 23 C 1.37866 * 125.07237 * 84.71882 * 4 3 2 24 24 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47520 * 300.00033 * 1 2 3 26 26 H 1.09003 * 109.47167 * 60.00572 * 1 2 3 27 27 H 1.08997 * 109.47041 * 239.99743 * 2 1 3 28 28 H 1.09002 * 109.46684 * 119.99646 * 2 1 3 29 29 H 1.08998 * 109.47017 * 59.99658 * 3 2 1 30 30 H 1.09003 * 109.46699 * 299.99714 * 3 2 1 31 31 H 1.07998 * 125.04078 * 359.96237 * 5 4 3 32 32 H 1.07994 * 126.49917 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.05536 * 359.95378 * 8 7 6 34 34 H 1.08001 * 119.78157 * 180.02562 * 9 8 7 35 35 H 0.97007 * 119.99970 * 33.78756 * 11 10 9 36 36 H 0.96993 * 120.00192 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.14468 * 180.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2896 1.5397 1.1150 6 6 5.5901 1.5086 0.7649 7 6 5.6383 1.3807 -0.6907 8 6 6.6789 1.2979 -1.6241 9 6 6.3928 1.1810 -2.9516 10 6 5.0662 1.1434 -3.3893 11 7 4.7902 1.0233 -4.7469 12 6 3.7063 1.6294 -5.2705 13 8 3.0223 2.3606 -4.5762 14 6 3.3631 1.4170 -6.6251 15 1 3.9692 0.7687 -7.2405 16 6 2.2364 2.0477 -7.1697 17 7 1.5030 2.8315 -6.4252 18 14 1.7824 1.7665 -8.9597 19 1 2.7652 0.8422 -9.5803 20 1 0.4247 1.1701 -9.0383 21 1 1.7962 3.0631 -9.6834 22 6 4.0210 1.2243 -2.4775 23 6 4.2976 1.3386 -1.1226 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.9219 1.6285 2.1265 32 1 6.4368 1.5663 1.4328 33 1 7.7064 1.3271 -1.2926 34 1 7.1967 1.1168 -3.6700 35 1 5.3778 0.5031 -5.3171 36 1 0.7233 3.2684 -6.8022 37 1 2.9976 1.1944 -2.8214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187547102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:09 Heat of formation + Delta-G solvation = -5.919021 kcal Electronic energy + Delta-G solvation = -20340.609131 eV Core-core repulsion = 17275.075740 eV Total energy + Delta-G solvation = -3065.533391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12941 -40.18165 -37.79804 -35.93518 -34.85164 -34.16429 -32.32476 -30.72417 -29.64878 -27.83583 -26.79826 -24.04418 -23.09280 -22.40998 -21.53024 -20.89711 -19.43766 -18.07083 -17.77038 -17.38650 -16.54731 -16.08909 -15.94726 -15.81103 -15.28774 -14.95915 -14.67314 -14.37291 -14.20575 -13.99556 -13.73208 -13.20427 -13.17005 -12.94411 -12.83231 -12.73174 -12.60526 -12.57006 -12.10350 -11.99311 -11.89292 -11.75537 -11.04916 -10.71002 -10.08767 -9.77458 -8.77600 -8.40005 -8.14303 -7.03220 0.36581 0.77790 1.36792 1.37542 1.56234 1.92357 1.98480 2.19845 2.38500 3.01541 3.10769 3.65938 3.70760 3.85187 3.94388 4.05062 4.22339 4.29609 4.35111 4.50234 4.57642 4.68563 4.76871 4.78254 4.83425 4.99608 5.08388 5.14428 5.18064 5.20638 5.27114 5.54842 5.66184 5.83481 5.88267 6.01757 6.20065 6.25201 6.56672 6.59720 6.71766 7.43149 8.38757 8.56931 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.005431 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.093298 B = 5154.020606 C = 6358.159829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.108 3.892 4 N -0.489 5.489 5 C 0.043 3.957 6 C -0.210 4.210 7 C -0.158 4.158 8 C -0.052 4.052 9 C -0.185 4.185 10 C 0.172 3.828 11 N -0.695 5.695 12 C 0.528 3.472 13 O -0.615 6.615 14 C -0.565 4.565 15 H 0.090 0.910 16 C 0.031 3.969 17 N -0.802 5.802 18 Si 1.003 2.997 19 H -0.245 1.245 20 H -0.267 1.267 21 H -0.266 1.266 22 C -0.172 4.172 23 C 0.093 3.907 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.051 0.949 31 H 0.207 0.793 32 H 0.173 0.827 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.406 0.594 36 H 0.278 0.722 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -5.352 12.637 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.014 4.014 4 N -0.173 5.173 5 C -0.081 4.081 6 C -0.235 4.235 7 C -0.164 4.164 8 C -0.071 4.071 9 C -0.206 4.206 10 C 0.073 3.927 11 N -0.339 5.339 12 C 0.337 3.663 13 O -0.503 6.503 14 C -0.600 4.600 15 H 0.109 0.891 16 C -0.187 4.187 17 N -0.431 5.431 18 Si 0.821 3.179 19 H -0.168 1.168 20 H -0.191 1.191 21 H -0.191 1.191 22 C -0.197 4.197 23 C -0.014 4.014 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.070 0.930 31 H 0.224 0.776 32 H 0.191 0.809 33 H 0.175 0.825 34 H 0.161 0.839 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.795 -4.720 13.100 14.202 hybrid contribution -0.362 -0.114 -1.448 1.497 sum 2.433 -4.833 11.652 12.847 Atomic orbital electron populations 1.21677 0.93217 1.02925 1.02440 1.21828 0.97700 0.95370 1.02037 1.21935 0.76689 0.98700 1.04055 1.44185 1.06129 1.62273 1.04693 1.22503 0.90201 1.03577 0.91834 1.21969 0.97014 1.12907 0.91596 1.19661 0.91441 1.09764 0.95494 1.20378 0.98945 0.97062 0.90737 1.20693 0.93662 1.08956 0.97282 1.17836 0.93279 0.97372 0.84254 1.43584 1.29914 1.54275 1.06107 1.17350 0.79552 0.79990 0.89361 1.90627 1.53635 1.42363 1.63650 1.20547 1.12871 1.30650 0.95974 0.89149 1.27056 0.94427 0.92001 1.05171 1.70189 1.12513 1.21290 1.39065 0.84904 0.79038 0.79347 0.74608 1.16781 1.19132 1.19056 1.19809 0.98373 1.11408 0.90136 1.18230 0.91605 1.03683 0.87883 0.91232 0.90007 0.94099 0.94876 0.89655 0.85816 0.93037 0.77605 0.80931 0.82527 0.83899 0.75897 0.91154 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.91 71.98 0.71 -2.44 16 2 C -0.13 -3.44 6.26 30.59 0.19 -3.24 16 3 C 0.11 3.11 6.00 86.38 0.52 3.62 16 4 N -0.49 -16.21 2.78 -515.64 -1.43 -17.64 16 5 C 0.04 1.08 11.28 83.14 0.94 2.02 16 6 C -0.21 -5.68 11.09 23.53 0.26 -5.42 16 7 C -0.16 -5.65 6.38 -20.12 -0.13 -5.78 16 8 C -0.05 -1.73 10.05 22.25 0.22 -1.50 16 9 C -0.18 -6.87 9.88 22.18 0.22 -6.65 16 10 C 0.17 8.05 6.27 38.53 0.24 8.29 16 11 N -0.69 -34.23 5.29 -311.61 -1.65 -35.88 16 12 C 0.53 31.68 7.27 85.01 0.62 32.30 16 13 O -0.62 -42.06 12.55 -4.81 -0.06 -42.12 16 14 C -0.57 -32.20 9.29 23.50 0.22 -31.98 16 15 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 16 C 0.03 1.74 5.50 85.33 0.47 2.21 16 17 N -0.80 -48.73 11.72 21.85 0.26 -48.47 16 18 Si 1.00 40.28 29.56 68.60 2.03 42.30 16 19 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 20 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 C -0.17 -8.59 8.57 22.56 0.19 -8.39 16 23 C 0.09 3.86 6.81 38.97 0.27 4.12 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.12 2.52 8.12 -2.39 -0.02 2.50 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.41 16.82 8.77 -92.70 -0.81 16.00 16 36 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 37 H 0.08 4.96 6.42 -2.91 -0.02 4.95 16 Total: -1.00 -81.15 318.30 4.35 -76.79 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.27 Total: 37.87 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.94 Total: -12.86 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -2.82 Total: -101.99 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.06 Total: -42.12 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Total: -81.15 4.35 -76.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187547102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.875 kcal (2) G-P(sol) polarization free energy of solvation -81.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds