Wall clock time and date at job start Mon Mar 30 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35873 * 117.00160 * 2 1 4 4 C 1.37610 * 120.22760 * 359.97438 * 3 2 1 5 5 C 1.39171 * 120.82472 * 180.02562 * 4 3 2 6 6 C 1.36261 * 120.87657 * 359.96052 * 5 4 3 7 7 C 1.40185 * 119.88811 * 359.75998 * 6 5 4 8 8 C 1.41584 * 121.27958 * 179.66526 * 7 6 5 9 9 N 1.38714 * 121.04916 * 0.59188 * 8 7 6 10 10 C 1.46896 * 110.99790 * 243.67786 * 9 8 7 11 11 C 1.46893 * 111.00021 * 119.71701 * 9 8 7 12 12 C 1.50706 * 109.47176 * 189.99879 * 11 9 8 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 9 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 89.99746 * 16 14 12 18 18 H 1.48504 * 109.47104 * 209.99992 * 16 14 12 19 19 H 1.48495 * 109.47249 * 329.99739 * 16 14 12 20 20 C 1.38536 * 117.90403 * 180.32054 * 8 7 6 21 21 C 1.38881 * 119.69188 * 0.26945 * 20 8 7 22 22 N 1.31229 * 121.82985 * 0.02562 * 21 20 8 23 23 C 1.33774 * 121.68403 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47401 * 300.00555 * 1 2 3 25 25 H 1.09006 * 109.47136 * 60.00005 * 1 2 3 26 26 H 1.09004 * 109.47619 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.58540 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.56294 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.05702 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47186 * 296.04027 * 10 9 8 31 31 H 1.08993 * 109.47654 * 56.04236 * 10 9 8 32 32 H 1.09000 * 109.47132 * 176.04329 * 10 9 8 33 33 H 1.09001 * 109.46739 * 70.00288 * 11 9 8 34 34 H 1.09000 * 109.47767 * 310.00547 * 11 9 8 35 35 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.15628 * 180.29760 * 20 8 7 37 37 H 1.07998 * 119.07994 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.3010 2.3677 -0.0005 5 6 1.9199 3.6142 -0.0011 6 6 3.2783 3.7205 -0.0003 7 6 4.0695 2.5632 0.0062 8 6 5.4833 2.6393 0.0001 9 7 6.1339 3.8644 -0.0002 10 6 6.9124 4.0466 -1.2325 11 6 6.9864 4.0080 1.1874 12 6 7.4805 5.4286 1.2822 13 1 7.1899 6.1524 0.5352 14 6 8.3036 5.8042 2.3226 15 7 8.6579 4.9226 3.2320 16 14 8.9154 7.5652 2.4406 17 1 7.9553 8.3705 3.2374 18 1 10.2452 7.5840 3.1013 19 1 9.0323 8.1410 1.0768 20 6 6.1965 1.4516 0.0003 21 6 5.5163 0.2408 0.0006 22 7 4.2052 0.1834 0.0003 23 6 3.4535 1.2900 -0.0009 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2226 2.3077 -0.0005 28 1 1.3154 4.5092 -0.0019 29 1 3.7447 4.6946 -0.0003 30 1 7.7028 3.2974 -1.2771 31 1 6.2571 3.9352 -2.0962 32 1 7.3552 5.0426 -1.2386 33 1 7.8376 3.3319 1.1074 34 1 6.4106 3.7632 2.0799 35 1 9.2367 5.1870 3.9641 36 1 7.2764 1.4672 0.0006 37 1 6.0821 -0.6791 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193480219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:52 Heat of formation + Delta-G solvation = 30.520766 kcal Electronic energy + Delta-G solvation = -20396.750519 eV Core-core repulsion = 17332.797276 eV Total energy + Delta-G solvation = -3063.953243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80780 -38.97300 -36.82306 -36.14501 -32.83544 -31.15721 -30.43436 -28.97479 -27.37714 -27.30043 -25.46395 -23.37929 -23.36100 -21.84174 -20.33908 -18.13385 -17.61339 -16.74108 -16.40300 -15.80929 -15.76405 -15.09096 -14.81579 -14.37302 -14.04843 -13.95799 -13.33897 -13.32602 -13.19360 -12.90856 -12.10324 -11.91332 -11.78277 -11.65357 -11.46466 -11.07350 -11.03711 -10.94215 -10.81163 -10.66299 -10.17020 -9.48307 -9.29131 -9.21257 -8.58072 -8.54084 -7.65671 -7.41405 -6.12497 -4.15493 0.74562 1.07364 2.28536 3.20927 3.22657 3.27038 3.33391 3.36113 4.31628 4.37931 4.45485 4.60935 4.89151 5.06502 5.07602 5.17039 5.22745 5.24872 5.32925 5.36584 5.47114 5.67166 5.76409 5.87421 6.02086 6.07775 6.22428 6.33003 6.51398 6.55446 6.76187 6.82387 6.94867 7.12786 7.18446 7.40923 7.69295 7.84919 8.00767 8.23993 8.40301 8.90562 9.49167 10.98193 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.004614 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.323036 B = 6066.908725 C = 6495.222633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.141 3.859 4 C -0.206 4.206 5 C -0.101 4.101 6 C -0.096 4.096 7 C -0.061 4.061 8 C 0.180 3.820 9 N -0.513 5.513 10 C 0.044 3.956 11 C 0.200 3.800 12 C -0.513 4.513 13 H 0.066 0.934 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.213 4.213 21 C 0.133 3.867 22 N -0.475 5.475 23 C 0.117 3.883 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.022 0.978 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.001 0.999 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 -6.523 -7.676 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.065 4.065 8 C 0.076 3.924 9 N -0.235 5.235 10 C -0.102 4.102 11 C 0.077 3.923 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.235 4.235 21 C -0.039 4.039 22 N -0.183 5.183 23 C -0.006 4.006 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.162 0.838 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.019 0.981 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.153 0.847 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.092 -7.126 -7.488 16.681 hybrid contribution 1.242 1.218 0.314 1.768 sum -11.850 -5.909 -7.174 15.059 Atomic orbital electron populations 1.23069 0.79067 1.03730 1.01180 1.86175 1.20464 1.26264 1.87974 1.18630 0.89808 0.84638 0.97517 1.21033 0.99743 0.92040 1.09872 1.20593 0.94783 0.96581 0.99938 1.21008 0.92908 0.98768 0.98815 1.18563 0.93190 0.93287 1.01413 1.19334 0.91807 0.90351 0.90867 1.59500 1.33344 1.25109 1.05556 1.22265 0.95369 1.02635 0.89953 1.19874 0.89551 0.97698 0.85148 1.21084 1.28944 0.94803 1.10310 0.91544 1.24984 0.96156 0.97804 0.95476 1.69962 1.35921 1.34104 1.13451 0.86452 0.78053 0.84351 0.78294 1.20541 1.21246 1.19758 1.22819 1.02176 0.93983 1.04517 1.22658 0.89873 0.97413 0.93970 1.67972 1.06864 1.30180 1.13292 1.18022 0.90883 0.88888 1.02785 0.92747 0.92804 0.88380 0.85390 0.85673 0.83796 0.95903 0.93274 0.89719 0.98130 0.95004 0.92724 0.84674 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.40 10.29 -19.34 -0.20 -4.60 16 3 C 0.14 2.26 6.74 -38.77 -0.26 2.00 16 4 C -0.21 -2.79 9.02 -39.46 -0.36 -3.15 16 5 C -0.10 -1.41 9.95 -39.95 -0.40 -1.81 16 6 C -0.10 -1.62 9.55 -39.56 -0.38 -2.00 16 7 C -0.06 -1.15 5.75 -106.67 -0.61 -1.76 16 8 C 0.18 3.53 4.67 -83.36 -0.39 3.14 16 9 N -0.51 -10.80 3.93 -179.89 -0.71 -11.51 16 10 C 0.04 0.82 9.09 60.06 0.55 1.37 16 11 C 0.20 5.04 4.31 -4.98 -0.02 5.02 16 12 C -0.51 -13.80 8.51 -34.44 -0.29 -14.09 16 13 H 0.07 1.75 7.10 -52.49 -0.37 1.37 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.21 -3.80 8.79 -39.23 -0.34 -4.14 16 21 C 0.13 2.19 11.13 -17.57 -0.20 1.99 16 22 N -0.47 -8.72 10.12 -11.00 -0.11 -8.83 16 23 C 0.12 2.16 6.62 -84.75 -0.56 1.60 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.13 1.31 6.25 -52.49 -0.33 0.98 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.14 2.50 7.59 -52.48 -0.40 2.10 16 30 H 0.02 0.40 7.53 -51.93 -0.39 0.01 16 31 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 32 H 0.08 1.62 6.86 -51.93 -0.36 1.26 16 33 H 0.00 0.02 7.54 -51.93 -0.39 -0.37 16 34 H 0.03 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.14 2.31 7.28 -52.49 -0.38 1.93 16 37 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -31.22 312.09 -7.63 -38.85 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.66 Total: -0.22 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.37 Total: -9.13 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.08 Total: -45.58 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.20 Total: -4.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.22 -7.63 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193480219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.370 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds