Wall clock time and date at job start Mon Mar 30 2020 01:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35873 * 117.00160 * 2 1 4 4 C 1.37610 * 120.22760 * 359.97438 * 3 2 1 5 5 C 1.39171 * 120.82472 * 180.02562 * 4 3 2 6 6 C 1.36261 * 120.87657 * 359.96052 * 5 4 3 7 7 C 1.40185 * 119.88811 * 359.75998 * 6 5 4 8 8 C 1.41584 * 121.27958 * 179.66526 * 7 6 5 9 9 N 1.38714 * 121.04916 * 0.59188 * 8 7 6 10 10 C 1.46896 * 110.99790 * 243.67786 * 9 8 7 11 11 C 1.46893 * 111.00021 * 119.71701 * 9 8 7 12 12 C 1.50706 * 109.47176 * 189.99879 * 11 9 8 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 9 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 89.99746 * 16 14 12 18 18 H 1.48504 * 109.47104 * 209.99992 * 16 14 12 19 19 H 1.48495 * 109.47249 * 329.99739 * 16 14 12 20 20 C 1.38536 * 117.90403 * 180.32054 * 8 7 6 21 21 C 1.38881 * 119.69188 * 0.26945 * 20 8 7 22 22 N 1.31229 * 121.82985 * 0.02562 * 21 20 8 23 23 C 1.33774 * 121.68403 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47401 * 300.00555 * 1 2 3 25 25 H 1.09006 * 109.47136 * 60.00005 * 1 2 3 26 26 H 1.09004 * 109.47619 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.58540 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.56294 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.05702 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47186 * 296.04027 * 10 9 8 31 31 H 1.08993 * 109.47654 * 56.04236 * 10 9 8 32 32 H 1.09000 * 109.47132 * 176.04329 * 10 9 8 33 33 H 1.09001 * 109.46739 * 70.00288 * 11 9 8 34 34 H 1.09000 * 109.47767 * 310.00547 * 11 9 8 35 35 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.15628 * 180.29760 * 20 8 7 37 37 H 1.07998 * 119.07994 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.3010 2.3677 -0.0005 5 6 1.9199 3.6142 -0.0011 6 6 3.2783 3.7205 -0.0003 7 6 4.0695 2.5632 0.0062 8 6 5.4833 2.6393 0.0001 9 7 6.1339 3.8644 -0.0002 10 6 6.9124 4.0466 -1.2325 11 6 6.9864 4.0080 1.1874 12 6 7.4805 5.4286 1.2822 13 1 7.1899 6.1524 0.5352 14 6 8.3036 5.8042 2.3226 15 7 8.6579 4.9226 3.2320 16 14 8.9154 7.5652 2.4406 17 1 7.9553 8.3705 3.2374 18 1 10.2452 7.5840 3.1013 19 1 9.0323 8.1410 1.0768 20 6 6.1965 1.4516 0.0003 21 6 5.5163 0.2408 0.0006 22 7 4.2052 0.1834 0.0003 23 6 3.4535 1.2900 -0.0009 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2226 2.3077 -0.0005 28 1 1.3154 4.5092 -0.0019 29 1 3.7447 4.6946 -0.0003 30 1 7.7028 3.2974 -1.2771 31 1 6.2571 3.9352 -2.0962 32 1 7.3552 5.0426 -1.2386 33 1 7.8376 3.3319 1.1074 34 1 6.4106 3.7632 2.0799 35 1 9.2367 5.1870 3.9641 36 1 7.2764 1.4672 0.0006 37 1 6.0821 -0.6791 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193480219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:51 Heat of formation + Delta-G solvation = 10.665434 kcal Electronic energy + Delta-G solvation = -20397.611511 eV Core-core repulsion = 17332.797276 eV Total energy + Delta-G solvation = -3064.814235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09089 -40.16515 -38.32803 -37.36587 -34.85861 -32.59789 -31.68338 -30.23804 -29.27536 -28.17247 -27.07539 -24.97764 -24.64134 -23.34914 -21.75794 -19.29768 -19.02081 -18.37761 -18.00867 -17.09430 -16.83277 -16.66920 -16.29175 -15.66811 -15.56380 -15.37181 -14.78654 -14.75973 -14.35269 -14.27597 -13.98801 -13.29643 -12.94008 -12.91188 -12.80859 -12.78172 -12.64435 -12.44766 -12.17239 -12.01304 -11.98787 -11.44357 -10.70224 -10.67732 -10.58220 -9.84004 -9.35512 -8.65640 -8.22989 -6.34359 -0.57405 -0.20063 0.96112 1.43012 1.44109 1.55233 1.97829 2.21649 2.39784 3.03707 3.07131 3.11390 3.26698 3.81083 3.89910 3.99695 4.02128 4.22717 4.36381 4.39990 4.44267 4.44448 4.55525 4.61314 4.68486 4.77205 4.91735 4.97102 5.06453 5.12117 5.17109 5.30929 5.48777 5.56690 5.66862 5.76871 6.00137 6.05237 6.36028 6.60661 6.79532 6.92128 7.35612 8.88156 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.004614 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.323036 B = 6066.908725 C = 6495.222633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.132 3.868 4 C -0.194 4.194 5 C -0.080 4.080 6 C -0.126 4.126 7 C -0.076 4.076 8 C 0.149 3.851 9 N -0.512 5.512 10 C 0.047 3.953 11 C 0.221 3.779 12 C -0.525 4.525 13 H 0.071 0.929 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.972 3.028 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.215 4.215 21 C 0.131 3.869 22 N -0.486 5.486 23 C 0.090 3.910 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.132 0.868 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.076 0.924 33 H -0.022 1.022 34 H -0.006 1.006 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.514 -5.973 -8.497 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.214 4.214 5 C -0.097 4.097 6 C -0.145 4.145 7 C -0.079 4.079 8 C 0.045 3.955 9 N -0.234 5.234 10 C -0.099 4.099 11 C 0.096 3.904 12 C -0.563 4.563 13 H 0.089 0.911 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.237 4.237 21 C -0.041 4.041 22 N -0.195 5.195 23 C -0.033 4.033 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.187 0.813 28 H 0.180 0.820 29 H 0.149 0.851 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.095 0.905 33 H -0.004 1.004 34 H 0.012 0.988 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.209 -6.584 -8.336 18.551 hybrid contribution 1.710 0.940 0.545 2.026 sum -13.499 -5.643 -7.791 16.576 Atomic orbital electron populations 1.23454 0.76159 1.05759 1.02676 1.86142 1.23468 1.25852 1.87739 1.18791 0.89236 0.86061 0.97447 1.21462 1.01632 0.90740 1.07567 1.21015 0.93777 0.98332 0.96606 1.21015 0.94338 0.97648 1.01482 1.18711 0.92891 0.94358 1.01903 1.19479 0.92643 0.90119 0.93239 1.59324 1.32522 1.26665 1.04858 1.22276 0.95766 1.02146 0.89722 1.19423 0.88609 0.96609 0.85734 1.21409 1.28901 0.95537 1.10455 0.91094 1.25915 0.96246 1.02265 0.94973 1.70099 1.36727 1.36406 1.14180 0.85338 0.77373 0.78843 0.78810 1.20016 1.20926 1.18390 1.22894 1.02180 0.94274 1.04332 1.23116 0.89668 0.98105 0.93240 1.68023 1.07484 1.30517 1.13477 1.18411 0.92394 0.88658 1.03814 0.91338 0.90980 0.86356 0.81298 0.82047 0.85057 0.95678 0.90923 0.90511 1.00400 0.98821 0.92603 0.84681 0.79424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.83 10.29 -92.12 -0.95 -9.78 16 3 C 0.13 4.02 6.74 22.80 0.15 4.17 16 4 C -0.19 -4.63 9.02 22.35 0.20 -4.42 16 5 C -0.08 -2.03 9.95 22.03 0.22 -1.81 16 6 C -0.13 -4.23 9.55 22.28 0.21 -4.02 16 7 C -0.08 -2.89 5.75 -21.19 -0.12 -3.01 16 8 C 0.15 6.05 4.67 38.95 0.18 6.23 16 9 N -0.51 -22.39 3.93 -723.04 -2.84 -25.23 16 10 C 0.05 1.77 9.09 127.69 1.16 2.93 16 11 C 0.22 11.68 4.31 85.56 0.37 12.05 16 12 C -0.52 -28.93 8.51 25.60 0.22 -28.71 16 13 H 0.07 3.76 7.10 -2.91 -0.02 3.74 16 14 C 0.00 0.25 5.46 84.65 0.46 0.71 16 15 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 16 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 20 C -0.21 -7.95 8.79 22.50 0.20 -7.75 16 21 C 0.13 4.34 11.13 84.94 0.95 5.29 16 22 N -0.49 -17.91 10.12 -188.71 -1.91 -19.82 16 23 C 0.09 3.30 6.62 40.31 0.27 3.56 16 24 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 25 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 26 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.17 2.59 6.25 -2.91 -0.02 2.57 16 28 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.13 4.66 7.59 -2.91 -0.02 4.64 16 30 H 0.02 0.91 7.53 -2.39 -0.02 0.89 16 31 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 32 H 0.08 2.97 6.86 -2.39 -0.02 2.95 16 33 H -0.02 -1.22 7.54 -2.39 -0.02 -1.24 16 34 H -0.01 -0.38 8.05 -2.39 -0.02 -0.40 16 35 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.14 4.86 7.28 -2.91 -0.02 4.84 16 37 H 0.19 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -69.88 312.09 3.27 -66.61 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.07 Total: 11.78 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.58 Total: -13.45 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -4.46 Total: -100.39 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.95 Total: -9.78 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.88 3.27 -66.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193480219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.278 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds