Wall clock time and date at job start Mon Mar 30 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46816 * 2 1 4 4 C 1.50696 * 109.47419 * 120.00145 * 2 1 3 5 5 H 1.08001 * 120.00161 * 119.99838 * 4 2 1 6 6 C 1.37874 * 120.00255 * 300.00031 * 4 2 1 7 7 N 1.31515 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47045 * 90.00412 * 8 6 4 10 10 H 1.48504 * 109.47030 * 210.00218 * 8 6 4 11 11 H 1.48492 * 109.46971 * 330.00138 * 8 6 4 12 12 N 1.46506 * 109.47201 * 240.00454 * 2 1 3 13 13 C 1.34775 * 119.99969 * 85.00033 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99880 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47226 * 179.97438 * 15 13 12 17 17 C 1.36831 * 125.06347 * 265.30227 * 16 15 13 18 18 C 1.34242 * 109.92830 * 180.14700 * 17 16 15 19 19 C 1.46491 * 106.99712 * 359.60332 * 18 17 16 20 20 C 1.39630 * 134.02857 * 180.21673 * 19 18 17 21 21 C 1.36627 * 119.76400 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52420 * 0.03970 * 21 20 19 23 23 C 1.37746 * 120.67032 * 359.97438 * 22 21 20 24 24 C 1.37685 * 125.06129 * 85.00005 * 16 15 13 25 25 H 1.08998 * 109.47529 * 60.00071 * 1 2 3 26 26 H 1.09003 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47275 * 299.99664 * 1 2 3 28 28 H 0.97001 * 120.00279 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00068 * 264.99945 * 12 2 1 30 30 H 1.09008 * 109.47109 * 60.00030 * 15 13 12 31 31 H 1.08998 * 109.47260 * 299.99591 * 15 13 12 32 32 H 1.07993 * 125.03787 * 0.02931 * 17 16 15 33 33 H 1.08002 * 126.50514 * 179.87275 * 18 17 16 34 34 H 1.07993 * 120.11544 * 0.02562 * 20 19 18 35 35 H 1.07994 * 119.73661 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.66510 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.11165 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4122 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 2.1471 -0.0181 -2.3572 14 8 1.8582 1.1585 -2.4116 15 6 2.6489 -0.7286 -3.5878 16 7 2.6977 0.2127 -4.7093 17 6 1.7067 0.3815 -5.6376 18 6 2.0696 1.3171 -6.5293 19 6 3.3978 1.7925 -6.1347 20 6 4.2817 2.7422 -6.6511 21 6 5.4807 2.9595 -6.0332 22 6 5.8280 2.2428 -4.8960 23 6 4.9713 1.3012 -4.3699 24 6 3.7451 1.0635 -4.9829 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7081 1.1607 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 1.9759 -1.5504 -3.8327 31 1 3.6480 -1.1211 -3.3988 32 1 0.7720 -0.1592 -5.6521 33 1 1.4903 1.6580 -7.3746 34 1 4.0180 3.3035 -7.5352 35 1 6.1638 3.6944 -6.4327 36 1 6.7793 2.4261 -4.4184 37 1 5.2509 0.7485 -3.4851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194633941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:05 Heat of formation + Delta-G solvation = 24.843468 kcal Electronic energy + Delta-G solvation = -20127.762592 eV Core-core repulsion = 17063.563163 eV Total energy + Delta-G solvation = -3064.199429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21491 -38.85590 -36.80526 -34.88618 -32.83383 -32.38698 -30.42770 -29.10085 -28.67335 -26.46382 -25.31189 -22.61594 -21.70929 -21.24272 -20.07489 -19.54805 -17.57073 -16.95608 -16.33306 -15.89078 -15.33209 -15.17074 -14.74319 -14.41353 -13.97597 -13.64592 -13.59610 -12.96628 -12.90294 -12.55079 -12.44565 -12.12975 -11.68996 -11.49770 -11.38987 -11.14243 -11.02514 -10.81857 -10.70581 -10.37621 -10.30237 -9.62767 -9.17633 -9.12123 -8.61994 -8.05000 -7.98643 -7.48887 -6.18204 -4.28454 1.30036 1.80073 2.74289 2.97375 3.15264 3.20620 3.27418 3.28868 3.95291 4.12805 4.31958 4.78442 4.82472 4.93675 5.09212 5.14118 5.16456 5.26905 5.34519 5.57163 5.63354 5.80277 5.93339 6.06987 6.21228 6.61666 6.73759 6.74962 6.87105 6.92022 6.95198 7.06496 7.32923 7.35622 7.39412 7.48997 7.61541 7.82893 8.07362 8.51724 8.69036 8.96889 9.39171 10.87719 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.004075 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.369910 B = 6869.817078 C = 7331.904618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.706 5.706 13 C 0.479 3.521 14 O -0.534 6.534 15 C 0.086 3.914 16 N -0.463 5.463 17 C 0.064 3.936 18 C -0.211 4.211 19 C -0.109 4.109 20 C -0.076 4.076 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.121 4.121 24 C 0.111 3.889 25 H 0.013 0.987 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -3.088 -15.760 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.355 5.355 13 C 0.261 3.739 14 O -0.411 6.411 15 C -0.040 4.040 16 N -0.145 5.145 17 C -0.061 4.061 18 C -0.236 4.236 19 C -0.113 4.113 20 C -0.094 4.094 21 C -0.170 4.170 22 C -0.124 4.124 23 C -0.141 4.141 24 C 0.005 3.995 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.783 -2.344 -15.362 16.260 hybrid contribution 0.258 -0.950 1.111 1.484 sum 5.041 -3.294 -14.252 15.472 Atomic orbital electron populations 1.22072 0.98365 0.99107 1.00953 1.18769 0.91072 0.93983 0.79795 0.93399 1.21190 1.32681 1.13328 0.90262 0.92031 1.24895 0.94728 0.94939 0.99112 1.69901 1.35635 1.22430 1.24002 0.86428 0.78651 0.79798 0.82114 1.20506 1.21011 1.19820 1.46527 1.65035 1.13557 1.10344 1.20696 0.79971 0.88178 0.85034 1.90737 1.50083 1.15612 1.84641 1.21722 1.04757 0.91771 0.85729 1.43427 1.14653 1.33471 1.22994 1.21753 0.93308 1.00722 0.90320 1.21572 0.96215 1.02501 1.03303 1.19186 0.95899 0.99413 0.96845 1.20196 0.93197 0.96617 0.99408 1.20556 0.97353 1.01689 0.97439 1.20744 0.99080 0.96100 0.96488 1.20053 0.92318 1.01232 1.00518 1.18190 0.90510 0.93922 0.96862 0.96749 0.95422 0.89057 0.92481 0.77843 0.86779 0.87260 0.81755 0.83785 0.86414 0.86409 0.86040 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.27 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 N -0.71 -13.93 5.07 -54.93 -0.28 -14.20 16 13 C 0.48 9.15 7.86 -10.99 -0.09 9.07 16 14 O -0.53 -12.92 16.08 5.56 0.09 -12.84 16 15 C 0.09 1.17 6.48 -5.19 -0.03 1.13 16 16 N -0.46 -7.07 2.27 -115.71 -0.26 -7.33 16 17 C 0.06 0.88 11.27 -16.73 -0.19 0.69 16 18 C -0.21 -2.91 11.08 -37.67 -0.42 -3.32 16 19 C -0.11 -1.69 6.37 -105.14 -0.67 -2.36 16 20 C -0.08 -1.02 10.05 -39.64 -0.40 -1.42 16 21 C -0.15 -1.92 9.97 -39.94 -0.40 -2.32 16 22 C -0.10 -1.41 10.01 -39.54 -0.40 -1.80 16 23 C -0.12 -1.85 10.00 -39.43 -0.39 -2.24 16 24 C 0.11 1.82 6.80 -83.99 -0.57 1.25 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.36 8.54 -40.82 -0.35 6.01 16 30 H 0.11 1.14 8.12 -51.92 -0.42 0.71 16 31 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -33.02 320.48 -8.62 -41.64 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.83 Total: 7.33 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.78 Total: -10.67 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.09 Total: -45.62 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.02 -8.62 -41.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194633941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.486 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds