Wall clock time and date at job start Mon Mar 30 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46816 * 2 1 4 4 C 1.50696 * 109.47419 * 120.00145 * 2 1 3 5 5 H 1.08001 * 120.00161 * 119.99838 * 4 2 1 6 6 C 1.37874 * 120.00255 * 300.00031 * 4 2 1 7 7 N 1.31515 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47045 * 90.00412 * 8 6 4 10 10 H 1.48504 * 109.47030 * 210.00218 * 8 6 4 11 11 H 1.48492 * 109.46971 * 330.00138 * 8 6 4 12 12 N 1.46506 * 109.47201 * 240.00454 * 2 1 3 13 13 C 1.34775 * 119.99969 * 85.00033 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99880 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47226 * 179.97438 * 15 13 12 17 17 C 1.36831 * 125.06347 * 265.30227 * 16 15 13 18 18 C 1.34242 * 109.92830 * 180.14700 * 17 16 15 19 19 C 1.46491 * 106.99712 * 359.60332 * 18 17 16 20 20 C 1.39630 * 134.02857 * 180.21673 * 19 18 17 21 21 C 1.36627 * 119.76400 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52420 * 0.03970 * 21 20 19 23 23 C 1.37746 * 120.67032 * 359.97438 * 22 21 20 24 24 C 1.37685 * 125.06129 * 85.00005 * 16 15 13 25 25 H 1.08998 * 109.47529 * 60.00071 * 1 2 3 26 26 H 1.09003 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47275 * 299.99664 * 1 2 3 28 28 H 0.97001 * 120.00279 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00068 * 264.99945 * 12 2 1 30 30 H 1.09008 * 109.47109 * 60.00030 * 15 13 12 31 31 H 1.08998 * 109.47260 * 299.99591 * 15 13 12 32 32 H 1.07993 * 125.03787 * 0.02931 * 17 16 15 33 33 H 1.08002 * 126.50514 * 179.87275 * 18 17 16 34 34 H 1.07993 * 120.11544 * 0.02562 * 20 19 18 35 35 H 1.07994 * 119.73661 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.66510 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.11165 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4122 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 2.1471 -0.0181 -2.3572 14 8 1.8582 1.1585 -2.4116 15 6 2.6489 -0.7286 -3.5878 16 7 2.6977 0.2127 -4.7093 17 6 1.7067 0.3815 -5.6376 18 6 2.0696 1.3171 -6.5293 19 6 3.3978 1.7925 -6.1347 20 6 4.2817 2.7422 -6.6511 21 6 5.4807 2.9595 -6.0332 22 6 5.8280 2.2428 -4.8960 23 6 4.9713 1.3012 -4.3699 24 6 3.7451 1.0635 -4.9829 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7081 1.1607 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 1.9759 -1.5504 -3.8327 31 1 3.6480 -1.1211 -3.3988 32 1 0.7720 -0.1592 -5.6521 33 1 1.4903 1.6580 -7.3746 34 1 4.0180 3.3035 -7.5352 35 1 6.1638 3.6944 -6.4327 36 1 6.7793 2.4261 -4.4184 37 1 5.2509 0.7485 -3.4851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194633941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:05 Heat of formation + Delta-G solvation = 4.684984 kcal Electronic energy + Delta-G solvation = -20128.636730 eV Core-core repulsion = 17063.563163 eV Total energy + Delta-G solvation = -3065.073566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28952 -40.42644 -37.87376 -36.73691 -34.43070 -33.81581 -31.67885 -30.72091 -29.73680 -27.71184 -27.33640 -23.77253 -23.20150 -22.41595 -21.47704 -20.98494 -19.18141 -18.13453 -17.67404 -17.37366 -17.01282 -16.29143 -16.14257 -16.00351 -15.34481 -14.79855 -14.78349 -14.52725 -14.31390 -13.96147 -13.78228 -13.48878 -13.15512 -13.00279 -12.86277 -12.74677 -12.48388 -12.45606 -12.29724 -12.14882 -11.73007 -11.15564 -10.97958 -10.63962 -10.48916 -9.83378 -9.06506 -8.55318 -8.20036 -6.38560 0.24985 0.72788 1.44048 1.44449 1.55131 1.65376 1.67559 1.94854 2.35025 2.62122 3.04477 3.10618 3.73834 3.81958 3.91943 4.00679 4.12986 4.18999 4.30935 4.58072 4.61692 4.70578 4.80776 4.86892 4.95851 5.05085 5.07971 5.19391 5.38330 5.55803 5.58762 5.63501 5.71546 5.84593 5.89599 5.92957 6.05841 6.33816 6.37706 6.69412 6.87995 7.28974 7.48015 8.86070 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.004075 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.369910 B = 6869.817078 C = 7331.904618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.008 1.008 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.699 5.699 13 C 0.477 3.523 14 O -0.591 6.591 15 C 0.098 3.902 16 N -0.474 5.474 17 C 0.053 3.947 18 C -0.221 4.221 19 C -0.136 4.136 20 C -0.084 4.084 21 C -0.154 4.154 22 C -0.109 4.109 23 C -0.147 4.147 24 C 0.079 3.921 25 H 0.009 0.991 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.159 0.841 31 H 0.135 0.865 32 H 0.195 0.805 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -4.817 -16.690 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.010 0.990 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.180 1.180 12 N -0.349 5.349 13 C 0.263 3.737 14 O -0.471 6.471 15 C -0.027 4.027 16 N -0.156 5.156 17 C -0.071 4.071 18 C -0.245 4.245 19 C -0.141 4.141 20 C -0.103 4.103 21 C -0.173 4.173 22 C -0.128 4.128 23 C -0.168 4.168 24 C -0.026 4.026 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.177 0.823 31 H 0.153 0.847 32 H 0.212 0.788 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.604 -4.123 -16.327 17.747 hybrid contribution 0.035 -0.322 1.336 1.375 sum 5.639 -4.445 -14.990 16.621 Atomic orbital electron populations 1.21878 0.98207 0.99613 0.99390 1.18320 0.91160 0.91692 0.82020 0.99017 1.21551 1.32647 1.13656 0.90637 0.90477 1.25829 0.94810 0.95555 1.02468 1.70063 1.36972 1.24068 1.24646 0.85324 0.77681 0.79307 0.77912 1.20483 1.21064 1.18043 1.46213 1.64966 1.14379 1.09348 1.21699 0.78331 0.87575 0.86119 1.90712 1.52379 1.18404 1.85654 1.21815 1.06913 0.91522 0.82456 1.43625 1.14807 1.33819 1.23392 1.22356 0.93966 1.00943 0.89823 1.21968 0.95878 1.02473 1.04189 1.19677 0.97114 1.00125 0.97199 1.20592 0.93197 0.96286 1.00183 1.20956 0.97611 1.01771 0.96918 1.21125 0.99655 0.95343 0.96703 1.20277 0.92937 1.02508 1.01075 1.18578 0.91301 0.94965 0.97787 0.97193 0.93643 0.91703 0.92566 0.75491 0.82301 0.84716 0.78774 0.81480 0.84046 0.83401 0.83832 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 9.26 71.98 0.67 -5.95 16 2 C 0.27 13.88 2.56 44.24 0.11 13.99 16 3 H -0.01 -0.50 7.58 -2.39 -0.02 -0.52 16 4 C -0.55 -28.30 8.73 25.60 0.22 -28.07 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 9 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 12 N -0.70 -27.19 5.07 -446.10 -2.26 -29.45 16 13 C 0.48 18.10 7.86 87.66 0.69 18.79 16 14 O -0.59 -29.47 16.08 -3.02 -0.05 -29.52 16 15 C 0.10 2.45 6.48 85.63 0.55 3.00 16 16 N -0.47 -13.92 2.27 -519.98 -1.18 -15.09 16 17 C 0.05 1.38 11.27 83.00 0.94 2.31 16 18 C -0.22 -5.82 11.08 23.51 0.26 -5.56 16 19 C -0.14 -4.15 6.37 -20.20 -0.13 -4.28 16 20 C -0.08 -2.17 10.05 22.23 0.22 -1.95 16 21 C -0.15 -3.66 9.97 22.03 0.22 -3.44 16 22 C -0.11 -2.84 10.01 22.30 0.22 -2.62 16 23 C -0.15 -4.53 10.00 22.37 0.22 -4.31 16 24 C 0.08 2.58 6.80 39.03 0.27 2.85 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 3.60 6.07 -2.39 -0.01 3.58 16 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.41 12.55 8.54 -92.71 -0.79 11.76 16 30 H 0.16 2.54 8.12 -2.38 -0.02 2.52 16 31 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.11 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -74.89 320.48 3.98 -70.90 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.28 Total: 26.36 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.92 Total: -14.07 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.20 Total: -97.02 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.05 Total: -29.52 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.89 3.98 -70.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194633941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.587 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds