Wall clock time and date at job start Mon Mar 30 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47124 * 2 1 4 4 C 1.50696 * 109.47230 * 239.98856 * 2 1 3 5 5 H 1.07996 * 120.00518 * 239.99894 * 4 2 1 6 6 C 1.37883 * 119.99412 * 60.00517 * 4 2 1 7 7 N 1.31512 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99455 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46952 * 90.00139 * 8 6 4 10 10 H 1.48500 * 109.47083 * 209.99651 * 8 6 4 11 11 H 1.48500 * 109.47739 * 330.00283 * 8 6 4 12 12 N 1.46506 * 109.46838 * 119.99177 * 2 1 3 13 13 C 1.34775 * 119.99969 * 275.00363 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99880 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47226 * 179.97438 * 15 13 12 17 17 C 1.36831 * 125.06347 * 265.30227 * 16 15 13 18 18 C 1.34242 * 109.92830 * 180.14700 * 17 16 15 19 19 C 1.46491 * 106.99712 * 359.60332 * 18 17 16 20 20 C 1.39630 * 134.02857 * 180.21673 * 19 18 17 21 21 C 1.36627 * 119.76400 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52420 * 0.03970 * 21 20 19 23 23 C 1.37746 * 120.67032 * 359.97438 * 22 21 20 24 24 C 1.37685 * 125.06129 * 85.00005 * 16 15 13 25 25 H 1.09004 * 109.47392 * 300.00770 * 1 2 3 26 26 H 1.09007 * 109.46756 * 60.00500 * 1 2 3 27 27 H 1.09001 * 109.47529 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99674 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00068 * 95.00275 * 12 2 1 30 30 H 1.09008 * 109.47109 * 60.00030 * 15 13 12 31 31 H 1.08998 * 109.47260 * 299.99591 * 15 13 12 32 32 H 1.07993 * 125.03787 * 0.02931 * 17 16 15 33 33 H 1.08002 * 126.50514 * 179.87275 * 18 17 16 34 34 H 1.07993 * 120.11544 * 0.02562 * 20 19 18 35 35 H 1.07994 * 119.73661 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.66510 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.11165 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6992 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3225 -1.1201 -4.0077 9 1 1.3447 -2.1621 -4.4120 10 1 2.4873 -0.1410 -5.1119 11 1 3.6308 -1.7573 -3.7116 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8588 1.1589 2.4114 15 6 2.6497 -0.7281 3.5877 16 7 2.6993 0.2135 4.7089 17 6 3.8056 0.9216 5.0923 18 6 3.5125 1.6885 6.1544 19 6 2.1008 1.4594 6.4715 20 6 1.2311 1.9583 7.4434 21 6 -0.0670 1.5335 7.4742 22 6 -0.5286 0.6088 6.5472 23 6 0.3123 0.1035 5.5802 24 6 1.6382 0.5221 5.5302 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7088 1.1609 -3.4845 29 1 2.2490 -1.6316 1.1529 30 1 3.6491 -1.1199 3.3982 31 1 1.9775 -1.5504 3.8328 32 1 4.7719 0.8696 4.6129 33 1 4.1881 2.3522 6.6737 34 1 1.5832 2.6779 8.1675 35 1 -0.7394 1.9199 8.2258 36 1 -1.5576 0.2828 6.5841 37 1 -0.0562 -0.6158 4.8638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194633953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:08 Heat of formation + Delta-G solvation = 24.801799 kcal Electronic energy + Delta-G solvation = -20136.538346 eV Core-core repulsion = 17072.337110 eV Total energy + Delta-G solvation = -3064.201236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21967 -38.85677 -36.81359 -34.88566 -32.83707 -32.38956 -30.43806 -29.09630 -28.68163 -26.46555 -25.31003 -22.62525 -21.71803 -21.22678 -20.10234 -19.54013 -17.56992 -16.95679 -16.32909 -15.89781 -15.34876 -15.20485 -14.72744 -14.38393 -13.97328 -13.72268 -13.53886 -13.00730 -12.92208 -12.50287 -12.46881 -12.10616 -11.71122 -11.49861 -11.39917 -11.16735 -10.99409 -10.80946 -10.71435 -10.39569 -10.30122 -9.63233 -9.17337 -9.11740 -8.62927 -8.04299 -7.99727 -7.49505 -6.18383 -4.28679 1.29102 1.79120 2.74034 2.97230 3.15229 3.19988 3.27035 3.28814 3.95042 4.11883 4.31722 4.77878 4.82271 4.94044 5.08882 5.13846 5.15177 5.25661 5.34433 5.56477 5.62173 5.79979 5.92401 6.06610 6.20129 6.60431 6.73764 6.74555 6.88390 6.91404 6.94691 7.07078 7.33024 7.35672 7.38671 7.49031 7.61473 7.83035 8.07515 8.51693 8.68850 8.96843 9.38913 10.87482 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.003922 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.869883 B = 7137.697420 C = 7519.710464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.706 5.706 13 C 0.479 3.521 14 O -0.534 6.534 15 C 0.086 3.914 16 N -0.463 5.463 17 C 0.065 3.935 18 C -0.211 4.211 19 C -0.109 4.109 20 C -0.075 4.075 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.121 4.121 24 C 0.111 3.889 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -3.757 16.452 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.355 5.355 13 C 0.261 3.739 14 O -0.411 6.411 15 C -0.040 4.040 16 N -0.145 5.145 17 C -0.060 4.060 18 C -0.236 4.236 19 C -0.113 4.113 20 C -0.094 4.094 21 C -0.171 4.171 22 C -0.124 4.124 23 C -0.142 4.142 24 C 0.005 3.995 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.228 -2.988 16.036 16.463 hybrid contribution 0.397 -0.923 -1.151 1.528 sum 2.626 -3.911 14.885 15.612 Atomic orbital electron populations 1.22077 0.98357 0.99121 1.00978 1.18770 0.91088 0.93962 0.79777 0.93398 1.21192 1.32712 1.13313 0.90262 0.92028 1.24898 0.94760 0.94915 0.99113 1.69903 1.35692 1.22346 1.23997 0.86430 0.79153 0.79275 0.82135 1.20496 1.21010 1.19840 1.46527 1.65039 1.13556 1.10338 1.20694 0.79990 0.88192 0.85002 1.90737 1.50087 1.15644 1.84606 1.21723 1.04909 0.91811 0.85538 1.43431 1.08574 1.37351 1.25185 1.21768 0.91418 0.95504 0.97336 1.21575 0.94466 1.06088 1.01474 1.19189 0.94445 0.99864 0.97827 1.20199 0.92863 0.99109 0.97203 1.20553 0.95766 1.00153 1.00595 1.20738 0.98900 0.97750 0.95052 1.20036 0.90478 1.03034 1.00610 1.18189 0.89602 0.98828 0.92877 0.96707 0.89064 0.95428 0.92478 0.77845 0.86714 0.87318 0.81706 0.83768 0.86404 0.86411 0.86069 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.65 2.56 -69.08 -0.18 6.47 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.71 -13.93 5.07 -54.93 -0.28 -14.20 16 13 C 0.48 9.16 7.86 -10.99 -0.09 9.07 16 14 O -0.53 -12.92 16.08 5.56 0.09 -12.83 16 15 C 0.09 1.17 6.48 -5.19 -0.03 1.13 16 16 N -0.46 -7.06 2.27 -115.71 -0.26 -7.32 16 17 C 0.06 0.89 11.27 -16.73 -0.19 0.70 16 18 C -0.21 -2.92 11.08 -37.67 -0.42 -3.33 16 19 C -0.11 -1.68 6.37 -105.14 -0.67 -2.35 16 20 C -0.08 -1.01 10.05 -39.64 -0.40 -1.41 16 21 C -0.15 -1.90 9.97 -39.94 -0.40 -2.30 16 22 C -0.11 -1.39 10.01 -39.54 -0.40 -1.78 16 23 C -0.12 -1.83 10.00 -39.43 -0.39 -2.22 16 24 C 0.11 1.80 6.80 -83.99 -0.57 1.23 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.36 8.54 -40.82 -0.35 6.01 16 30 H 0.11 1.16 8.12 -51.92 -0.42 0.74 16 31 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -32.99 320.48 -8.62 -41.62 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.83 Total: 7.31 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.78 Total: -10.61 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.09 Total: -45.59 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.99 -8.62 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194633953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.418 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds