Wall clock time and date at job start Mon Mar 30 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47124 * 2 1 4 4 C 1.50696 * 109.47230 * 239.98856 * 2 1 3 5 5 H 1.07996 * 120.00518 * 239.99894 * 4 2 1 6 6 C 1.37883 * 119.99412 * 60.00517 * 4 2 1 7 7 N 1.31512 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99455 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46952 * 90.00139 * 8 6 4 10 10 H 1.48500 * 109.47083 * 209.99651 * 8 6 4 11 11 H 1.48500 * 109.47739 * 330.00283 * 8 6 4 12 12 N 1.46506 * 109.46838 * 119.99177 * 2 1 3 13 13 C 1.34775 * 119.99969 * 275.00363 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99880 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47226 * 179.97438 * 15 13 12 17 17 C 1.36831 * 125.06347 * 265.30227 * 16 15 13 18 18 C 1.34242 * 109.92830 * 180.14700 * 17 16 15 19 19 C 1.46491 * 106.99712 * 359.60332 * 18 17 16 20 20 C 1.39630 * 134.02857 * 180.21673 * 19 18 17 21 21 C 1.36627 * 119.76400 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52420 * 0.03970 * 21 20 19 23 23 C 1.37746 * 120.67032 * 359.97438 * 22 21 20 24 24 C 1.37685 * 125.06129 * 85.00005 * 16 15 13 25 25 H 1.09004 * 109.47392 * 300.00770 * 1 2 3 26 26 H 1.09007 * 109.46756 * 60.00500 * 1 2 3 27 27 H 1.09001 * 109.47529 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99674 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00068 * 95.00275 * 12 2 1 30 30 H 1.09008 * 109.47109 * 60.00030 * 15 13 12 31 31 H 1.08998 * 109.47260 * 299.99591 * 15 13 12 32 32 H 1.07993 * 125.03787 * 0.02931 * 17 16 15 33 33 H 1.08002 * 126.50514 * 179.87275 * 18 17 16 34 34 H 1.07993 * 120.11544 * 0.02562 * 20 19 18 35 35 H 1.07994 * 119.73661 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.66510 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.11165 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6992 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3225 -1.1201 -4.0077 9 1 1.3447 -2.1621 -4.4120 10 1 2.4873 -0.1410 -5.1119 11 1 3.6308 -1.7573 -3.7116 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8588 1.1589 2.4114 15 6 2.6497 -0.7281 3.5877 16 7 2.6993 0.2135 4.7089 17 6 3.8056 0.9216 5.0923 18 6 3.5125 1.6885 6.1544 19 6 2.1008 1.4594 6.4715 20 6 1.2311 1.9583 7.4434 21 6 -0.0670 1.5335 7.4742 22 6 -0.5286 0.6088 6.5472 23 6 0.3123 0.1035 5.5802 24 6 1.6382 0.5221 5.5302 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7088 1.1609 -3.4845 29 1 2.2490 -1.6316 1.1529 30 1 3.6491 -1.1199 3.3982 31 1 1.9775 -1.5504 3.8328 32 1 4.7719 0.8696 4.6129 33 1 4.1881 2.3522 6.6737 34 1 1.5832 2.6779 8.1675 35 1 -0.7394 1.9199 8.2258 36 1 -1.5576 0.2828 6.5841 37 1 -0.0562 -0.6158 4.8638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194633953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:08 Heat of formation + Delta-G solvation = 4.704886 kcal Electronic energy + Delta-G solvation = -20137.409814 eV Core-core repulsion = 17072.337110 eV Total energy + Delta-G solvation = -3065.072703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.28972 -40.42648 -37.87245 -36.73733 -34.43014 -33.81590 -31.68288 -30.71671 -29.73816 -27.71457 -27.33675 -23.77618 -23.19741 -22.40139 -21.50102 -20.98000 -19.17798 -18.12608 -17.67162 -17.35492 -17.05286 -16.29447 -16.19807 -15.90149 -15.35159 -14.88493 -14.70091 -14.52830 -14.35078 -13.97531 -13.74109 -13.49640 -13.16467 -13.02021 -12.82109 -12.74471 -12.48092 -12.45355 -12.32572 -12.16109 -11.72782 -11.14604 -10.98109 -10.63878 -10.49096 -9.83376 -9.06357 -8.55375 -8.19832 -6.38385 0.25133 0.73071 1.44240 1.44956 1.55439 1.65549 1.67228 1.94733 2.35109 2.62144 3.04744 3.10764 3.73845 3.82120 3.91681 4.00655 4.13085 4.19089 4.31157 4.58119 4.61889 4.69585 4.80817 4.85919 4.95994 5.04668 5.07927 5.19501 5.37822 5.55949 5.58893 5.62863 5.71789 5.84299 5.89655 5.92963 6.05358 6.34112 6.37243 6.69614 6.87988 7.29111 7.48038 8.86295 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.003922 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.869883 B = 7137.697420 C = 7519.710464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.699 5.699 13 C 0.477 3.523 14 O -0.591 6.591 15 C 0.098 3.902 16 N -0.474 5.474 17 C 0.052 3.948 18 C -0.221 4.221 19 C -0.137 4.137 20 C -0.084 4.084 21 C -0.154 4.154 22 C -0.109 4.109 23 C -0.147 4.147 24 C 0.080 3.920 25 H 0.006 0.994 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.194 0.806 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -5.480 17.320 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.349 5.349 13 C 0.263 3.737 14 O -0.471 6.471 15 C -0.027 4.027 16 N -0.156 5.156 17 C -0.072 4.072 18 C -0.245 4.245 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.173 4.173 22 C -0.128 4.128 23 C -0.167 4.167 24 C -0.026 4.026 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.211 0.789 33 H 0.185 0.815 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.129 -4.760 16.937 17.869 hybrid contribution 0.080 -0.314 -1.339 1.377 sum 3.209 -5.075 15.598 16.714 Atomic orbital electron populations 1.21891 0.98464 0.99497 0.99296 1.18318 0.90975 0.91820 0.82040 0.98782 1.21549 1.32678 1.13640 0.90576 0.90389 1.25839 0.94842 0.95524 1.02494 1.70065 1.37043 1.24021 1.24640 0.85313 0.79076 0.77960 0.77797 1.19638 1.21453 1.18522 1.46213 1.64966 1.14380 1.09352 1.21698 0.78367 0.87592 0.86064 1.90712 1.52352 1.18471 1.85608 1.21814 1.07568 0.91185 0.82140 1.43622 1.08743 1.38007 1.25270 1.22345 0.92203 0.95160 0.97489 1.21965 0.94295 1.06424 1.01819 1.19673 0.95618 1.00324 0.98547 1.20588 0.93118 0.99343 0.97223 1.20958 0.96012 0.99473 1.00821 1.21130 0.99831 0.97370 0.94440 1.20277 0.90741 1.04025 1.01664 1.18585 0.90359 0.99804 0.93831 0.97447 0.91639 0.93794 0.92572 0.75487 0.82522 0.84494 0.78936 0.81539 0.84116 0.83404 0.83733 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.89 2.56 44.24 0.11 14.01 16 3 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 4 C -0.55 -28.16 8.73 25.60 0.22 -27.93 16 5 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 8 Si 0.97 41.17 29.54 68.60 2.03 43.19 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 N -0.70 -27.18 5.07 -446.10 -2.26 -29.44 16 13 C 0.48 18.10 7.86 87.66 0.69 18.79 16 14 O -0.59 -29.47 16.08 -3.02 -0.05 -29.52 16 15 C 0.10 2.45 6.48 85.63 0.55 3.01 16 16 N -0.47 -13.93 2.27 -519.98 -1.18 -15.11 16 17 C 0.05 1.37 11.27 83.00 0.94 2.31 16 18 C -0.22 -5.87 11.08 23.51 0.26 -5.61 16 19 C -0.14 -4.15 6.37 -20.20 -0.13 -4.28 16 20 C -0.08 -2.16 10.05 22.23 0.22 -1.93 16 21 C -0.15 -3.60 9.97 22.03 0.22 -3.38 16 22 C -0.11 -2.75 10.01 22.30 0.22 -2.53 16 23 C -0.15 -4.39 10.00 22.37 0.22 -4.17 16 24 C 0.08 2.57 6.80 39.03 0.27 2.84 16 25 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.06 3.66 6.07 -2.38 -0.01 3.65 16 27 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.41 12.54 8.54 -92.71 -0.79 11.75 16 30 H 0.16 2.59 8.12 -2.38 -0.02 2.57 16 31 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -74.63 320.48 3.98 -70.65 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.29 Total: 26.47 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.92 Total: -13.81 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -3.20 Total: -96.97 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.05 Total: -29.52 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -74.63 3.98 -70.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194633953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.351 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds