Wall clock time and date at job start Mon Mar 30 2020 01:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.38361 * 119.84696 * 269.72509 * 17 16 15 19 19 C 1.37947 * 120.14932 * 179.76703 * 18 17 16 20 20 C 1.39632 * 119.84647 * 0.52338 * 19 18 17 21 21 C 1.43202 * 120.15124 * 179.70299 * 20 19 18 22 22 N 9.88701 * 139.92644 * 204.14968 * 12 1 2 23 23 C 1.39635 * 119.70105 * 359.73245 * 20 19 18 24 24 C 1.37947 * 119.84120 * 359.97438 * 23 20 19 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 30 30 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 31 31 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 32 32 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 33 33 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 34 34 H 1.08003 * 119.92439 * 0.02562 * 18 17 16 35 35 H 1.08008 * 120.07701 * 180.26176 * 19 18 17 36 36 H 1.07996 * 120.07805 * 179.97438 * 23 20 19 37 37 H 1.08002 * 119.91810 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2041 -0.4559 -5.9890 18 6 4.5604 -0.4845 -6.2611 19 6 5.0284 -1.1368 -7.3828 20 6 4.1290 -1.7598 -8.2504 21 6 4.6073 -2.4334 -9.4201 22 7 4.9817 -2.9690 -10.3493 23 6 2.7611 -1.7225 -7.9726 24 6 2.3074 -1.0717 -6.8440 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7090 1.1614 3.4844 29 1 2.2490 -1.6319 -1.1526 30 1 3.6492 -1.1205 -3.3979 31 1 1.9776 -1.5509 -3.8325 32 1 1.7012 0.6458 -4.9483 33 1 3.3726 1.0769 -4.5141 34 1 5.2546 0.0015 -5.5914 35 1 6.0878 -1.1620 -7.5918 36 1 2.0601 -2.2019 -8.6396 37 1 1.2496 -1.0418 -6.6282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194652975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:49 Heat of formation + Delta-G solvation = -21.816611 kcal Electronic energy + Delta-G solvation = -19036.493580 eV Core-core repulsion = 15970.270819 eV Total energy + Delta-G solvation = -3066.222762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77187 -40.16877 -37.64846 -36.71044 -34.87071 -34.24814 -31.95853 -31.57403 -30.21754 -27.31674 -26.26121 -23.63909 -23.32693 -22.14281 -20.97164 -19.84035 -18.84600 -17.53958 -17.10124 -16.82212 -16.17654 -16.00385 -15.87042 -15.42353 -15.07684 -14.73693 -14.47406 -14.34874 -14.16219 -13.90833 -13.76843 -13.55104 -13.47745 -12.97144 -12.84022 -12.74020 -12.54991 -12.23587 -12.19936 -12.12658 -12.09030 -11.69811 -11.07168 -10.67406 -10.52263 -9.89355 -9.66466 -9.64902 -8.15077 -6.32222 -0.17997 0.48359 1.47033 1.47141 1.57867 1.61992 1.93944 1.94943 2.39112 2.73039 2.89759 2.97093 3.15466 3.82900 3.93553 4.04797 4.13024 4.31790 4.44867 4.49162 4.60123 4.75638 4.84030 4.88856 4.96985 5.00157 5.14623 5.19043 5.32538 5.33584 5.40652 5.48714 5.66580 5.72242 5.75239 5.93555 5.96313 6.14831 6.45044 6.77031 7.06813 7.36315 7.67234 8.91010 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039214 B = 0.002788 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.862031 B =10042.234999 C =10357.429008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.709 5.709 13 C 0.493 3.507 14 O -0.604 6.604 15 C -0.121 4.121 16 C -0.066 4.066 17 C -0.046 4.046 18 C -0.119 4.119 19 C -0.062 4.062 20 C -0.051 4.051 21 C 0.282 3.718 22 N -0.472 5.472 23 C -0.062 4.062 24 C -0.119 4.119 25 H 0.013 0.987 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.264 0.736 29 H 0.406 0.594 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -6.444 -16.821 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.358 5.358 13 C 0.282 3.718 14 O -0.486 6.486 15 C -0.160 4.160 16 C -0.104 4.104 17 C -0.046 4.046 18 C -0.137 4.137 19 C -0.083 4.083 20 C -0.055 4.055 21 C -0.033 4.033 22 N -0.148 5.148 23 C -0.082 4.082 24 C -0.136 4.136 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.219 -6.348 -18.151 19.924 hybrid contribution 0.018 -0.133 1.392 1.398 sum 5.237 -6.481 -16.759 18.716 Atomic orbital electron populations 1.21891 0.98437 0.99407 0.99513 1.18301 0.91054 0.91882 0.82292 0.98549 1.21574 1.32374 1.13492 0.90861 0.90800 1.25811 0.94951 0.95632 1.02379 1.70061 1.37086 1.24012 1.24511 0.85360 0.77716 0.79241 0.78102 1.20416 1.21147 1.18322 1.46326 1.65295 1.14310 1.09889 1.21550 0.77277 0.87142 0.85878 1.90640 1.53307 1.18627 1.86072 1.21644 1.04708 0.99424 0.90241 1.20327 1.02724 0.96857 0.90488 1.20163 0.93977 0.95372 0.95137 1.21217 0.95240 0.99759 0.97519 1.21331 1.00106 0.94194 0.92637 1.16099 0.94669 1.03400 0.91308 1.25999 0.92358 0.92276 0.92621 1.81281 1.09478 1.11488 1.12582 1.21333 0.93191 0.96730 0.96994 1.21216 1.01029 0.97581 0.93818 0.96779 0.94094 0.91783 0.92643 0.75931 0.86722 0.86506 0.90723 0.90892 0.83570 0.83483 0.83436 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 9.26 71.98 0.67 -5.93 16 2 C 0.27 13.50 2.56 44.25 0.11 13.61 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 4 C -0.54 -28.06 8.73 25.60 0.22 -27.84 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -52.05 11.32 21.45 0.24 -51.80 16 8 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 12 N -0.71 -27.25 5.07 -446.09 -2.26 -29.51 16 13 C 0.49 17.43 7.79 87.66 0.68 18.11 16 14 O -0.60 -27.30 15.64 -3.02 -0.05 -27.35 16 15 C -0.12 -2.51 5.68 29.85 0.17 -2.34 16 16 C -0.07 -1.29 4.63 29.85 0.14 -1.15 16 17 C -0.05 -0.65 5.14 -19.80 -0.10 -0.75 16 18 C -0.12 -1.47 9.68 22.23 0.22 -1.26 16 19 C -0.06 -0.72 9.76 22.54 0.22 -0.50 16 20 C -0.05 -0.69 5.73 -21.36 -0.12 -0.81 16 21 C 0.28 5.01 15.33 88.33 1.35 6.36 16 22 N -0.47 -10.97 18.54 19.00 0.35 -10.61 16 23 C -0.06 -0.71 9.76 22.54 0.22 -0.49 16 24 C -0.12 -1.43 9.68 22.23 0.22 -1.21 16 25 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.41 12.74 8.54 -92.71 -0.79 11.95 16 30 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 33 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -69.52 329.57 5.05 -64.47 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.29 Total: 14.73 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.44 Total: -3.10 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -1.67 Total: -91.92 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -69.52 5.05 -64.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.657 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds