Wall clock time and date at job start Mon Mar 30 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00665 * 2 1 3 5 5 H 1.08005 * 119.99551 * 275.00099 * 4 2 1 6 6 C 1.37868 * 120.00466 * 95.00077 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46490 * 109.47380 * 120.00197 * 2 1 3 13 13 C 1.34776 * 120.00268 * 275.00307 * 12 2 1 14 14 O 1.21674 * 120.00032 * 359.97438 * 13 12 2 15 15 C 1.46910 * 120.00445 * 179.97438 * 13 12 2 16 16 C 1.36378 * 126.76419 * 0.02562 * 15 13 12 17 17 N 1.35472 * 109.76803 * 179.97438 * 16 15 13 18 18 C 1.46503 * 124.79069 * 179.97438 * 17 16 15 19 19 C 1.37963 * 110.42615 * 359.97438 * 17 16 15 20 20 C 1.39123 * 133.19186 * 180.02562 * 19 17 16 21 21 C 1.37771 * 119.93126 * 179.29220 * 20 19 17 22 22 C 1.38753 * 120.63083 * 0.59472 * 21 20 19 23 23 C 1.37757 * 120.30186 * 359.61819 * 22 21 20 24 24 C 1.39269 * 119.67228 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.46978 * 295.03916 * 1 2 3 26 26 H 1.08995 * 109.47334 * 175.03157 * 1 2 3 27 27 H 1.09001 * 109.47232 * 55.02816 * 1 2 3 28 28 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00104 * 94.99714 * 12 2 1 30 30 H 1.08002 * 125.12046 * 359.97438 * 16 15 13 31 31 H 1.09000 * 109.47029 * 90.02213 * 18 17 16 32 32 H 1.08994 * 109.47222 * 210.02049 * 18 17 16 33 33 H 1.08999 * 109.46791 * 330.02853 * 18 17 16 34 34 H 1.08004 * 120.03688 * 359.97438 * 20 19 17 35 35 H 1.07994 * 119.68476 * 180.20801 * 21 20 19 36 36 H 1.07999 * 119.84971 * 179.59213 * 22 21 20 37 37 H 1.08004 * 120.16519 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8581 1.1623 2.4117 15 6 2.6363 -0.7110 3.5567 16 6 2.9982 -2.0225 3.6515 17 7 3.3975 -2.2973 4.9165 18 6 3.8552 -3.6088 5.3823 19 6 3.3124 -1.1680 5.7044 20 6 3.5964 -0.9172 7.0430 21 6 3.4207 0.3487 7.5576 22 6 2.9500 1.3786 6.7558 23 6 2.6590 1.1492 5.4290 24 6 2.8389 -0.1239 4.8939 25 1 -0.3633 0.4350 0.9312 26 1 -0.3634 -1.0237 -0.0890 27 1 -0.3634 0.5890 -0.8421 28 1 2.9369 -0.1046 -4.2554 29 1 2.2490 -1.6318 1.1525 30 1 2.9706 -2.7348 2.8402 31 1 4.9340 -3.6861 5.2473 32 1 3.6120 -3.7244 6.4384 33 1 3.3601 -4.3915 4.8075 34 1 3.9647 -1.7115 7.6755 35 1 3.6456 0.5397 8.5964 36 1 2.8108 2.3646 7.1739 37 1 2.2924 1.9525 4.8070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194718971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:41 Heat of formation + Delta-G solvation = 20.403433 kcal Electronic energy + Delta-G solvation = -20183.879690 eV Core-core repulsion = 17119.487727 eV Total energy + Delta-G solvation = -3064.391963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41735 -38.50151 -37.07386 -34.75008 -32.94546 -32.24640 -30.29707 -30.03266 -28.59117 -26.59707 -25.25673 -23.01592 -22.44227 -21.16907 -20.22443 -19.25685 -17.76623 -16.64412 -16.47214 -15.58878 -15.48851 -15.32313 -15.10430 -14.09081 -13.93298 -13.88893 -13.72269 -13.03911 -12.87138 -12.70738 -12.58002 -12.43368 -12.28366 -11.59595 -11.45868 -11.27989 -11.05417 -10.89804 -10.76183 -10.51904 -9.84090 -9.53853 -9.15680 -9.10267 -8.66345 -8.23452 -8.03923 -7.56634 -6.20569 -4.23894 1.08125 1.60329 2.24485 2.64929 3.30720 3.37982 3.46391 3.80171 4.13927 4.23578 4.36698 4.52429 4.61580 4.77152 4.92197 5.03820 5.12944 5.17958 5.21108 5.39411 5.54398 5.66302 5.75575 5.93520 6.11934 6.41322 6.44729 6.60136 6.62114 6.73491 6.74580 6.79713 7.02529 7.13555 7.18168 7.26844 7.45694 7.63592 8.21295 8.66155 8.80481 9.13261 9.42595 10.91172 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.004695 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.626435 B = 5962.411266 C = 6609.123966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.703 5.703 13 C 0.575 3.425 14 O -0.560 6.560 15 C -0.212 4.212 16 C 0.098 3.902 17 N -0.478 5.478 18 C 0.076 3.924 19 C 0.085 3.915 20 C -0.131 4.131 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.058 4.058 24 C -0.064 4.064 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.267 0.733 29 H 0.389 0.611 30 H 0.178 0.822 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -5.065 20.240 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.068 0.932 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.184 1.184 12 N -0.351 5.351 13 C 0.361 3.639 14 O -0.440 6.440 15 C -0.223 4.223 16 C -0.032 4.032 17 N -0.160 5.160 18 C -0.066 4.066 19 C -0.019 4.019 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.168 4.168 23 C -0.076 4.076 24 C -0.069 4.069 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.222 0.778 30 H 0.195 0.805 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.210 -4.522 20.126 20.745 hybrid contribution 0.234 0.250 -0.206 0.400 sum 2.444 -4.273 19.919 20.519 Atomic orbital electron populations 1.22214 0.98644 1.00476 0.99272 1.19106 0.90872 0.94397 0.82641 0.93166 1.21011 1.45146 0.95560 0.94980 0.90416 1.24929 0.93588 0.98652 0.95135 1.69882 1.44958 1.36188 1.01704 0.86891 0.79916 0.85856 0.77263 1.19827 1.21256 1.18389 1.46460 1.65381 1.13537 1.09690 1.17304 0.77929 0.86393 0.82237 1.90702 1.52380 1.15706 1.85261 1.20416 1.13959 0.93409 0.94505 1.22140 0.97707 0.96719 0.86645 1.43542 1.55385 1.08786 1.08277 1.22013 1.00822 0.82185 1.01560 1.18266 1.04229 0.86216 0.93145 1.19918 1.05957 0.97798 0.91514 1.20759 0.99917 0.92093 0.99455 1.20943 1.02878 0.99214 0.93813 1.20764 0.96641 0.95523 0.94694 1.18826 1.02667 0.93421 0.91945 0.95121 0.93510 0.92986 0.92290 0.77812 0.80477 0.90977 0.90032 0.89530 0.86566 0.85938 0.85977 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.47 37.16 0.35 -2.96 16 2 C 0.23 5.66 2.22 -69.09 -0.15 5.51 16 3 H 0.05 1.34 4.73 -51.93 -0.25 1.10 16 4 C -0.53 -14.30 9.05 -34.44 -0.31 -14.62 16 5 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 8 Si 0.87 21.91 26.99 -169.99 -4.59 17.32 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -6.43 6.82 56.52 0.39 -6.05 16 12 N -0.70 -14.70 5.06 -56.17 -0.28 -14.99 16 13 C 0.57 12.12 7.76 -12.75 -0.10 12.03 16 14 O -0.56 -13.71 15.82 5.21 0.08 -13.63 16 15 C -0.21 -3.70 6.27 -103.31 -0.65 -4.35 16 16 C 0.10 1.31 10.76 -16.62 -0.18 1.13 16 17 N -0.48 -5.63 3.14 -121.59 -0.38 -6.01 16 18 C 0.08 0.52 10.99 59.85 0.66 1.18 16 19 C 0.09 1.18 6.79 -83.96 -0.57 0.61 16 20 C -0.13 -1.50 9.91 -39.42 -0.39 -1.89 16 21 C -0.10 -1.13 10.01 -39.56 -0.40 -1.53 16 22 C -0.15 -1.88 10.03 -39.57 -0.40 -2.28 16 23 C -0.06 -0.92 9.85 -39.37 -0.39 -1.30 16 24 C -0.06 -1.07 6.27 -104.96 -0.66 -1.73 16 25 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.39 6.97 7.47 -40.82 -0.31 6.67 16 30 H 0.18 1.80 7.38 -52.49 -0.39 1.42 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 33 H 0.09 0.44 8.13 -51.93 -0.42 0.02 16 34 H 0.12 0.99 8.02 -52.48 -0.42 0.57 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 2.28 7.45 -52.48 -0.39 1.89 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -34.16 317.10 -7.60 -41.76 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.70 Total: 4.32 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.28 Total: -8.02 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.11 Total: -46.54 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.16 -7.60 -41.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194718971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.163 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds