Wall clock time and date at job start Mon Mar 30 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00665 * 2 1 3 5 5 H 1.08005 * 119.99551 * 275.00099 * 4 2 1 6 6 C 1.37868 * 120.00466 * 95.00077 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46490 * 109.47380 * 120.00197 * 2 1 3 13 13 C 1.34776 * 120.00268 * 275.00307 * 12 2 1 14 14 O 1.21674 * 120.00032 * 359.97438 * 13 12 2 15 15 C 1.46910 * 120.00445 * 179.97438 * 13 12 2 16 16 C 1.36378 * 126.76419 * 0.02562 * 15 13 12 17 17 N 1.35472 * 109.76803 * 179.97438 * 16 15 13 18 18 C 1.46503 * 124.79069 * 179.97438 * 17 16 15 19 19 C 1.37963 * 110.42615 * 359.97438 * 17 16 15 20 20 C 1.39123 * 133.19186 * 180.02562 * 19 17 16 21 21 C 1.37771 * 119.93126 * 179.29220 * 20 19 17 22 22 C 1.38753 * 120.63083 * 0.59472 * 21 20 19 23 23 C 1.37757 * 120.30186 * 359.61819 * 22 21 20 24 24 C 1.39269 * 119.67228 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.46978 * 295.03916 * 1 2 3 26 26 H 1.08995 * 109.47334 * 175.03157 * 1 2 3 27 27 H 1.09001 * 109.47232 * 55.02816 * 1 2 3 28 28 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00104 * 94.99714 * 12 2 1 30 30 H 1.08002 * 125.12046 * 359.97438 * 16 15 13 31 31 H 1.09000 * 109.47029 * 90.02213 * 18 17 16 32 32 H 1.08994 * 109.47222 * 210.02049 * 18 17 16 33 33 H 1.08999 * 109.46791 * 330.02853 * 18 17 16 34 34 H 1.08004 * 120.03688 * 359.97438 * 20 19 17 35 35 H 1.07994 * 119.68476 * 180.20801 * 21 20 19 36 36 H 1.07999 * 119.84971 * 179.59213 * 22 21 20 37 37 H 1.08004 * 120.16519 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8581 1.1623 2.4117 15 6 2.6363 -0.7110 3.5567 16 6 2.9982 -2.0225 3.6515 17 7 3.3975 -2.2973 4.9165 18 6 3.8552 -3.6088 5.3823 19 6 3.3124 -1.1680 5.7044 20 6 3.5964 -0.9172 7.0430 21 6 3.4207 0.3487 7.5576 22 6 2.9500 1.3786 6.7558 23 6 2.6590 1.1492 5.4290 24 6 2.8389 -0.1239 4.8939 25 1 -0.3633 0.4350 0.9312 26 1 -0.3634 -1.0237 -0.0890 27 1 -0.3634 0.5890 -0.8421 28 1 2.9369 -0.1046 -4.2554 29 1 2.2490 -1.6318 1.1525 30 1 2.9706 -2.7348 2.8402 31 1 4.9340 -3.6861 5.2473 32 1 3.6120 -3.7244 6.4384 33 1 3.3601 -4.3915 4.8075 34 1 3.9647 -1.7115 7.6755 35 1 3.6456 0.5397 8.5964 36 1 2.8108 2.3646 7.1739 37 1 2.2924 1.9525 4.8070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194718971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:40 Heat of formation + Delta-G solvation = -2.188994 kcal Electronic energy + Delta-G solvation = -20184.859371 eV Core-core repulsion = 17119.487727 eV Total energy + Delta-G solvation = -3065.371644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44173 -40.15740 -38.02703 -36.63368 -34.41570 -33.85869 -31.71231 -31.20764 -29.72492 -27.53081 -27.29666 -24.26647 -23.59140 -22.18931 -21.90528 -20.84025 -19.27342 -18.23884 -17.62781 -16.97380 -16.66680 -16.46180 -16.37595 -15.73524 -15.48658 -14.99756 -14.84443 -14.63944 -14.44954 -14.18816 -13.72872 -13.56099 -13.26301 -13.24243 -13.04249 -12.79917 -12.54941 -12.43070 -12.20457 -11.90920 -11.87379 -11.22780 -10.87141 -10.75060 -10.60631 -9.80363 -9.22690 -8.63523 -8.39200 -6.44347 0.03728 0.59925 1.07253 1.28639 1.33097 1.44667 1.77655 2.27319 2.50060 2.55410 3.00372 3.06183 3.72013 3.73818 3.87089 4.16897 4.28792 4.33135 4.48683 4.50301 4.54909 4.64867 4.72628 4.77106 4.79376 4.81162 4.84698 5.09896 5.17309 5.37301 5.46256 5.48631 5.60054 5.71670 5.74895 5.78330 6.15098 6.16055 6.29064 6.59730 6.98591 7.22339 7.54512 8.75567 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.004695 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.626435 B = 5962.411266 C = 6609.123966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.235 3.765 3 H 0.026 0.974 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.037 3.963 7 N -0.928 5.928 8 Si 0.922 3.078 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.260 1.260 12 N -0.700 5.700 13 C 0.574 3.426 14 O -0.607 6.607 15 C -0.271 4.271 16 C 0.132 3.868 17 N -0.467 5.467 18 C 0.065 3.935 19 C 0.073 3.927 20 C -0.118 4.118 21 C -0.103 4.103 22 C -0.141 4.141 23 C -0.101 4.101 24 C -0.097 4.097 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.271 0.729 29 H 0.403 0.597 30 H 0.210 0.790 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.142 0.858 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -6.955 23.223 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.131 3.869 3 H 0.044 0.956 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.566 5.566 8 Si 0.747 3.253 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.184 1.184 12 N -0.349 5.349 13 C 0.364 3.636 14 O -0.491 6.491 15 C -0.282 4.282 16 C -0.001 4.001 17 N -0.147 5.147 18 C -0.074 4.074 19 C -0.032 4.032 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.159 4.159 23 C -0.120 4.120 24 C -0.101 4.101 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.239 0.761 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.160 0.840 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.043 -6.458 23.151 24.227 hybrid contribution 0.031 0.723 -0.963 1.204 sum 3.074 -5.736 22.188 23.122 Atomic orbital electron populations 1.22103 0.97184 1.01342 0.99227 1.18876 0.91952 0.93053 0.83026 0.95646 1.21167 1.44194 0.94952 0.95807 0.91975 1.25518 0.93800 1.01979 0.95050 1.69959 1.46707 1.37564 1.02391 0.86127 0.79524 0.81980 0.77626 1.20334 1.19947 1.18406 1.46144 1.65750 1.14129 1.08886 1.17810 0.76854 0.85928 0.83029 1.90658 1.54518 1.17847 1.86058 1.20115 1.18868 0.95533 0.93664 1.22507 0.94187 0.95477 0.87976 1.43887 1.53480 1.10031 1.07305 1.22458 1.01953 0.79860 1.03166 1.18524 1.04594 0.86068 0.93978 1.20420 1.03806 0.98967 0.90648 1.21227 0.98589 0.91356 1.00984 1.21247 1.01256 1.00923 0.92515 1.20721 0.99934 0.95136 0.96226 1.19120 1.03916 0.94690 0.92414 0.94900 0.92070 0.93330 0.91997 0.76112 0.77361 0.89478 0.87969 0.87320 0.82627 0.81978 0.84036 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 9.47 71.98 0.68 -5.65 16 2 C 0.23 11.65 2.22 44.25 0.10 11.75 16 3 H 0.03 1.40 4.73 -2.39 -0.01 1.39 16 4 C -0.52 -28.66 9.05 25.60 0.23 -28.43 16 5 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 6 C 0.04 2.12 5.47 84.65 0.46 2.58 16 7 N -0.93 -55.46 13.96 21.44 0.30 -55.16 16 8 Si 0.92 45.97 26.99 68.60 1.85 47.83 16 9 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.26 -12.85 6.82 99.48 0.68 -12.17 16 12 N -0.70 -29.80 5.06 -449.86 -2.27 -32.08 16 13 C 0.57 25.19 7.76 86.51 0.67 25.86 16 14 O -0.61 -31.63 15.82 -4.27 -0.07 -31.70 16 15 C -0.27 -9.60 6.27 -19.02 -0.12 -9.72 16 16 C 0.13 3.28 10.76 83.70 0.90 4.18 16 17 N -0.47 -9.49 3.14 -538.61 -1.69 -11.18 16 18 C 0.06 0.57 10.99 127.77 1.40 1.97 16 19 C 0.07 1.83 6.79 38.92 0.26 2.10 16 20 C -0.12 -2.22 9.91 22.37 0.22 -2.00 16 21 C -0.10 -1.90 10.01 22.28 0.22 -1.67 16 22 C -0.14 -3.41 10.03 22.28 0.22 -3.19 16 23 C -0.10 -3.39 9.85 22.40 0.22 -3.16 16 24 C -0.10 -3.30 6.27 -20.08 -0.13 -3.42 16 25 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.40 14.39 7.47 -92.70 -0.69 13.70 16 30 H 0.21 3.61 7.38 -2.91 -0.02 3.59 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.54 8.03 -2.39 -0.02 0.52 16 33 H 0.11 0.54 8.13 -2.39 -0.02 0.52 16 34 H 0.16 1.68 8.02 -2.91 -0.02 1.65 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.10 3.88 7.45 -2.91 -0.02 3.86 16 Total: -1.00 -78.34 317.10 3.84 -74.50 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.36 Total: 16.58 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 5.36 Total: -8.79 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -3.67 Total: -98.41 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.07 Total: -31.70 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.85 Total: 47.83 kcal Total: -78.34 3.84 -74.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194718971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.310 kcal (2) G-P(sol) polarization free energy of solvation -78.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds