Wall clock time and date at job start Mon Mar 30 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47393 * 2 1 4 4 N 1.46500 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99800 * 264.74853 * 4 3 2 6 6 H 1.07997 * 120.00071 * 146.16951 * 5 4 3 7 7 C 1.38952 * 119.99691 * 326.16806 * 5 4 3 8 8 N 1.31412 * 120.00497 * 337.67579 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 157.68064 * 7 5 4 10 10 H 1.48501 * 109.46980 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47529 * 119.99523 * 9 7 5 12 12 H 1.48505 * 109.46974 * 239.99761 * 9 7 5 13 13 C 1.34775 * 120.00470 * 84.75088 * 4 3 2 14 14 O 1.21289 * 120.00096 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99526 * 359.97438 * 13 4 3 16 16 C 1.50708 * 109.46797 * 180.02562 * 15 13 4 17 17 C 1.38351 * 119.84490 * 90.00879 * 16 15 13 18 18 C 1.37956 * 120.15168 * 179.97438 * 17 16 15 19 19 C 1.39627 * 119.84222 * 359.97438 * 18 17 16 20 20 C 1.43203 * 120.14662 * 180.02562 * 19 18 17 21 21 N 9.95939 * 129.55963 * 275.53017 * 2 1 3 22 22 C 1.39632 * 119.70288 * 0.27695 * 19 18 17 23 23 C 1.37949 * 119.84507 * 359.46482 * 22 19 18 24 24 H 1.09001 * 109.47577 * 60.00225 * 1 2 3 25 25 H 1.09000 * 109.47469 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47241 * 300.00190 * 1 2 3 27 27 H 1.09007 * 109.46756 * 239.99729 * 2 1 3 28 28 H 1.08997 * 109.46905 * 120.00375 * 2 1 3 29 29 H 1.08996 * 109.47082 * 59.99713 * 3 2 1 30 30 H 1.09006 * 109.47226 * 300.00119 * 3 2 1 31 31 H 0.96993 * 120.00251 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.47094 * 60.00862 * 15 13 4 33 33 H 1.08995 * 109.47652 * 300.00841 * 15 13 4 34 34 H 1.08004 * 119.92534 * 0.02562 * 17 16 15 35 35 H 1.07996 * 120.07716 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.08054 * 179.70292 * 22 19 18 37 37 H 1.07993 * 119.92491 * 180.23173 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1909 1.5509 1.1815 6 1 5.1338 1.0396 1.3076 7 6 3.6730 2.3187 2.2173 8 7 2.8017 3.2681 1.9594 9 14 4.2153 2.0016 3.9765 10 1 5.1959 0.8865 3.9988 11 1 4.8463 3.2272 4.5286 12 1 3.0345 1.6384 4.8006 13 6 4.1784 1.3358 -1.1632 14 8 5.3913 1.3353 -1.1635 15 6 3.4244 1.2160 -2.4624 16 6 4.4033 1.1108 -3.6035 17 6 4.8504 -0.1322 -4.0147 18 6 5.7461 -0.2358 -5.0588 19 6 6.2009 0.9175 -5.7012 20 6 7.1302 0.8175 -6.7861 21 7 7.8729 0.7400 -7.6426 22 6 5.7496 2.1691 -5.2775 23 6 4.8498 2.2578 -4.2356 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6766 1.9562 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 2.4405 3.8043 2.6824 32 1 2.7974 2.0969 -2.6012 33 1 2.7980 0.3244 -2.4382 34 1 4.4968 -1.0235 -3.5177 35 1 6.0946 -1.2067 -5.3786 36 1 6.1011 3.0654 -5.7668 37 1 4.4970 3.2250 -3.9093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194870245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:08 Heat of formation + Delta-G solvation = 13.175162 kcal Electronic energy + Delta-G solvation = -20018.967771 eV Core-core repulsion = 16954.262367 eV Total energy + Delta-G solvation = -3064.705405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.64566 -38.37906 -36.42859 -35.29573 -33.05462 -32.36992 -31.23021 -30.98076 -28.09376 -25.84390 -24.49834 -22.66807 -22.44433 -21.00871 -18.95194 -18.82650 -16.92011 -16.11552 -15.60869 -15.38150 -14.85151 -14.47674 -14.26342 -13.96835 -13.91009 -13.78419 -13.41147 -13.02367 -12.87381 -12.77271 -12.47150 -11.97509 -11.73237 -11.66690 -11.46956 -11.29477 -11.21417 -10.98489 -10.91371 -10.64610 -10.34164 -10.27570 -9.97396 -8.99081 -8.90076 -8.75882 -8.32465 -7.53135 -6.37711 -3.98333 0.88057 1.47845 2.66558 3.00518 3.12271 3.24309 3.30559 3.84360 3.89713 3.97670 4.14457 4.78581 4.89161 4.94367 4.98449 5.08378 5.44877 5.47295 5.54120 5.60662 5.68812 5.78455 5.80580 5.97479 6.03747 6.11298 6.20160 6.31819 6.34894 6.36618 6.42400 6.55070 6.75107 6.86332 6.94897 7.24045 7.48522 7.56180 8.19926 8.46298 9.14712 9.37131 9.96095 10.65782 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.004402 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.611987 B = 6358.643276 C = 7022.436955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.099 3.901 4 N -0.440 5.440 5 C -0.306 4.306 6 H 0.093 0.907 7 C 0.036 3.964 8 N -0.868 5.868 9 Si 0.915 3.085 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.459 3.541 14 O -0.575 6.575 15 C -0.110 4.110 16 C -0.009 4.009 17 C -0.111 4.111 18 C -0.068 4.068 19 C -0.050 4.050 20 C 0.266 3.734 21 N -0.437 5.437 22 C -0.067 4.067 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -4.226 -7.919 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.025 4.025 4 N -0.159 5.159 5 C -0.434 4.434 6 H 0.110 0.890 7 C -0.168 4.168 8 N -0.507 5.507 9 Si 0.741 3.259 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.247 3.753 14 O -0.458 6.458 15 C -0.150 4.150 16 C -0.010 4.010 17 C -0.129 4.129 18 C -0.088 4.088 19 C -0.054 4.054 20 C -0.049 4.049 21 N -0.112 5.112 22 C -0.088 4.088 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.725 -4.197 -9.117 10.706 hybrid contribution -0.224 0.021 1.310 1.329 sum -3.949 -4.176 -7.807 9.695 Atomic orbital electron populations 1.21679 0.96321 1.00705 1.01613 1.21977 0.94915 0.99324 1.01671 1.21697 0.82017 0.94507 1.04268 1.43524 1.04611 1.62926 1.04813 1.19500 1.06795 1.28416 0.88682 0.88966 1.25307 0.97286 0.93704 1.00469 1.69917 1.31021 1.16929 1.32809 0.86056 0.78644 0.78683 0.82490 1.19173 1.20784 1.20593 1.20055 0.88038 0.82916 0.84277 1.90559 1.13866 1.54754 1.86651 1.20882 0.97351 1.04157 0.92581 1.19790 0.94762 0.93092 0.93336 1.20925 0.97741 0.97687 0.96519 1.21044 0.95883 0.96963 0.94948 1.15928 0.99145 0.95224 0.95072 1.25833 0.92924 0.93285 0.92862 1.81222 1.10628 1.07867 1.11520 1.21062 0.95779 0.95660 0.96250 1.20970 0.97498 0.98774 0.95450 0.93128 0.93453 0.92724 0.93213 0.91714 0.86772 0.93398 0.92271 0.88798 0.89026 0.85219 0.85378 0.85333 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.15 0.37 -1.55 16 2 C -0.14 -2.29 6.17 -26.74 -0.16 -2.46 16 3 C 0.10 1.97 4.71 -4.05 -0.02 1.95 16 4 N -0.44 -10.36 2.56 -114.81 -0.29 -10.65 16 5 C -0.31 -8.10 8.98 -14.93 -0.13 -8.23 16 6 H 0.09 2.59 7.70 -52.49 -0.40 2.19 16 7 C 0.04 0.92 4.92 -17.47 -0.09 0.83 16 8 N -0.87 -22.30 11.33 55.50 0.63 -21.67 16 9 Si 0.91 19.89 29.61 -169.99 -5.03 14.86 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.46 10.27 7.59 -10.99 -0.08 10.18 16 14 O -0.58 -15.05 15.86 5.55 0.09 -14.97 16 15 C -0.11 -1.76 4.43 -29.03 -0.13 -1.89 16 16 C -0.01 -0.13 4.38 -104.53 -0.46 -0.58 16 17 C -0.11 -1.47 9.68 -39.64 -0.38 -1.86 16 18 C -0.07 -0.82 9.76 -39.17 -0.38 -1.20 16 19 C -0.05 -0.63 5.73 -106.93 -0.61 -1.25 16 20 C 0.27 3.57 15.33 -22.46 -0.34 3.23 16 21 N -0.44 -6.63 18.54 41.85 0.78 -5.85 16 22 C -0.07 -0.83 9.76 -39.17 -0.38 -1.21 16 23 C -0.11 -1.50 9.68 -39.64 -0.38 -1.88 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.75 6.59 -51.93 -0.34 0.41 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.11 2.57 5.34 -51.93 -0.28 2.29 16 30 H 0.05 0.85 6.66 -51.93 -0.35 0.51 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.09 1.37 7.35 -51.92 -0.38 0.99 16 33 H 0.09 1.27 6.47 -51.93 -0.34 0.93 16 34 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -30.43 323.46 -6.76 -37.19 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.60 Total: 2.15 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.19 Total: -5.93 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 1.11 Total: -38.18 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.43 -6.76 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194870245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.363 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds