Wall clock time and date at job start Mon Mar 30 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47393 * 2 1 4 4 N 1.46500 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99800 * 264.74853 * 4 3 2 6 6 H 1.07997 * 120.00071 * 146.16951 * 5 4 3 7 7 C 1.38952 * 119.99691 * 326.16806 * 5 4 3 8 8 N 1.31412 * 120.00497 * 337.67579 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 157.68064 * 7 5 4 10 10 H 1.48501 * 109.46980 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47529 * 119.99523 * 9 7 5 12 12 H 1.48505 * 109.46974 * 239.99761 * 9 7 5 13 13 C 1.34775 * 120.00470 * 84.75088 * 4 3 2 14 14 O 1.21289 * 120.00096 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99526 * 359.97438 * 13 4 3 16 16 C 1.50708 * 109.46797 * 180.02562 * 15 13 4 17 17 C 1.38351 * 119.84490 * 90.00879 * 16 15 13 18 18 C 1.37956 * 120.15168 * 179.97438 * 17 16 15 19 19 C 1.39627 * 119.84222 * 359.97438 * 18 17 16 20 20 C 1.43203 * 120.14662 * 180.02562 * 19 18 17 21 21 N 9.95939 * 129.55963 * 275.53017 * 2 1 3 22 22 C 1.39632 * 119.70288 * 0.27695 * 19 18 17 23 23 C 1.37949 * 119.84507 * 359.46482 * 22 19 18 24 24 H 1.09001 * 109.47577 * 60.00225 * 1 2 3 25 25 H 1.09000 * 109.47469 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47241 * 300.00190 * 1 2 3 27 27 H 1.09007 * 109.46756 * 239.99729 * 2 1 3 28 28 H 1.08997 * 109.46905 * 120.00375 * 2 1 3 29 29 H 1.08996 * 109.47082 * 59.99713 * 3 2 1 30 30 H 1.09006 * 109.47226 * 300.00119 * 3 2 1 31 31 H 0.96993 * 120.00251 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.47094 * 60.00862 * 15 13 4 33 33 H 1.08995 * 109.47652 * 300.00841 * 15 13 4 34 34 H 1.08004 * 119.92534 * 0.02562 * 17 16 15 35 35 H 1.07996 * 120.07716 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.08054 * 179.70292 * 22 19 18 37 37 H 1.07993 * 119.92491 * 180.23173 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1909 1.5509 1.1815 6 1 5.1338 1.0396 1.3076 7 6 3.6730 2.3187 2.2173 8 7 2.8017 3.2681 1.9594 9 14 4.2153 2.0016 3.9765 10 1 5.1959 0.8865 3.9988 11 1 4.8463 3.2272 4.5286 12 1 3.0345 1.6384 4.8006 13 6 4.1784 1.3358 -1.1632 14 8 5.3913 1.3353 -1.1635 15 6 3.4244 1.2160 -2.4624 16 6 4.4033 1.1108 -3.6035 17 6 4.8504 -0.1322 -4.0147 18 6 5.7461 -0.2358 -5.0588 19 6 6.2009 0.9175 -5.7012 20 6 7.1302 0.8175 -6.7861 21 7 7.8729 0.7400 -7.6426 22 6 5.7496 2.1691 -5.2775 23 6 4.8498 2.2578 -4.2356 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6766 1.9562 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 2.4405 3.8043 2.6824 32 1 2.7974 2.0969 -2.6012 33 1 2.7980 0.3244 -2.4382 34 1 4.4968 -1.0235 -3.5177 35 1 6.0946 -1.2067 -5.3786 36 1 6.1011 3.0654 -5.7668 37 1 4.4970 3.2250 -3.9093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194870245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:08 Heat of formation + Delta-G solvation = -2.682962 kcal Electronic energy + Delta-G solvation = -20019.655431 eV Core-core repulsion = 16954.262367 eV Total energy + Delta-G solvation = -3065.393064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91140 -39.84606 -37.58688 -36.97729 -34.60857 -33.64542 -32.91751 -31.97075 -29.42615 -27.38610 -26.11887 -23.68503 -23.66119 -22.35826 -20.60167 -19.85056 -18.73190 -17.77923 -16.85336 -16.63199 -16.51121 -15.74609 -15.47948 -15.44155 -15.28996 -15.04565 -14.46321 -14.38220 -14.13925 -13.92124 -13.80016 -13.38986 -13.25030 -13.00167 -12.98362 -12.68838 -12.61251 -12.36616 -12.13065 -12.01105 -11.91004 -11.89584 -11.42780 -10.82082 -10.34788 -9.88472 -9.62958 -9.37766 -8.29532 -5.97482 -0.17279 0.49117 1.37444 1.44148 1.56379 1.59304 1.92237 2.13242 2.33592 2.83418 2.92623 3.06205 3.28514 3.85169 3.92382 4.02860 4.17511 4.29252 4.38033 4.46186 4.48239 4.66036 4.72443 4.75466 4.84727 4.92818 5.08628 5.12509 5.22854 5.29528 5.36512 5.38120 5.49004 5.55042 5.69051 5.70137 5.92526 6.27069 6.42396 6.60314 7.25744 7.57183 8.16094 8.71905 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.004402 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.611987 B = 6358.643276 C = 7022.436955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.455 5.455 5 C -0.337 4.337 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.885 5.885 9 Si 0.972 3.028 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.265 1.265 13 C 0.450 3.550 14 O -0.623 6.623 15 C -0.094 4.094 16 C -0.030 4.030 17 C -0.117 4.117 18 C -0.062 4.062 19 C -0.053 4.053 20 C 0.286 3.714 21 N -0.467 5.467 22 C -0.064 4.064 23 C -0.121 4.121 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.272 0.728 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -4.859 -8.697 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.023 4.023 4 N -0.174 5.174 5 C -0.466 4.466 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.523 5.523 9 Si 0.796 3.204 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.240 3.760 14 O -0.510 6.510 15 C -0.134 4.134 16 C -0.032 4.032 17 C -0.135 4.135 18 C -0.082 4.082 19 C -0.056 4.056 20 C -0.028 4.028 21 N -0.143 5.143 22 C -0.084 4.084 23 C -0.139 4.139 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.056 -4.829 -9.901 12.121 hybrid contribution 0.206 0.241 1.522 1.555 sum -4.850 -4.588 -8.379 10.714 Atomic orbital electron populations 1.21635 0.93557 1.02293 1.02143 1.21883 0.97184 0.96678 1.01351 1.21781 0.79926 0.96780 1.03854 1.43795 1.06072 1.62977 1.04539 1.19372 1.06738 1.29437 0.91020 0.92066 1.25923 0.97272 0.93158 1.03303 1.69976 1.31416 1.17070 1.33882 0.85212 0.78549 0.78136 0.78490 1.19791 1.20681 1.18982 1.21053 0.87896 0.81172 0.85921 1.90515 1.16221 1.56566 1.87676 1.20763 0.97306 1.06084 0.89235 1.19864 0.95547 0.94204 0.93544 1.21128 0.97864 0.97676 0.96840 1.21300 0.94928 0.97933 0.94080 1.16016 0.99018 0.95694 0.94887 1.25825 0.92311 0.92324 0.92364 1.81249 1.11654 1.08901 1.12534 1.21269 0.94969 0.96480 0.95671 1.21117 0.97988 0.98817 0.95954 0.91254 0.91337 0.93574 0.91571 0.94021 0.89495 0.91307 0.91811 0.87201 0.86434 0.83899 0.82938 0.83265 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.13 -4.14 6.17 30.59 0.19 -3.95 16 3 C 0.10 3.90 4.71 86.38 0.41 4.31 16 4 N -0.46 -21.73 2.56 -635.55 -1.63 -23.36 16 5 C -0.34 -18.45 8.98 84.04 0.75 -17.69 16 6 H 0.06 3.64 7.70 -2.91 -0.02 3.62 16 7 C 0.01 0.31 4.92 84.93 0.42 0.72 16 8 N -0.89 -45.81 11.33 21.66 0.25 -45.57 16 9 Si 0.97 41.30 29.61 68.60 2.03 43.33 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 13 C 0.45 20.21 7.59 87.66 0.66 20.88 16 14 O -0.62 -33.46 15.86 -3.06 -0.05 -33.51 16 15 C -0.09 -2.88 4.43 29.10 0.13 -2.75 16 16 C -0.03 -0.86 4.38 -19.80 -0.09 -0.94 16 17 C -0.12 -2.89 9.68 22.23 0.22 -2.68 16 18 C -0.06 -1.36 9.76 22.54 0.22 -1.14 16 19 C -0.05 -1.22 5.73 -21.36 -0.12 -1.35 16 20 C 0.29 7.19 15.33 88.33 1.35 8.55 16 21 N -0.47 -13.59 18.54 19.01 0.35 -13.23 16 22 C -0.06 -1.46 9.76 22.54 0.22 -1.24 16 23 C -0.12 -3.17 9.68 22.23 0.22 -2.95 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.83 6.59 -2.38 -0.02 1.82 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 3.92 5.34 -2.39 -0.01 3.91 16 30 H 0.07 2.34 6.66 -2.38 -0.02 2.32 16 31 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 32 H 0.11 2.98 7.35 -2.38 -0.02 2.96 16 33 H 0.12 2.93 6.47 -2.39 -0.02 2.91 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -67.68 323.46 7.32 -60.35 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.08 Total: 14.80 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.29 Total: -2.81 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.03 Total: -82.16 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.05 Total: -33.51 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -67.68 7.32 -60.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194870245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.668 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds