Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48504 * 109.46921 * 269.99950 * 3 2 1 5 5 H 1.48498 * 109.47201 * 30.00397 * 3 2 1 6 6 H 1.48500 * 109.46995 * 150.00430 * 3 2 1 7 7 C 1.37877 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99723 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46882 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47032 * 180.02562 * 10 9 7 12 12 N 1.29018 * 126.43922 * 270.02752 * 11 10 9 13 13 N 1.28740 * 108.81268 * 179.97438 * 12 11 10 14 14 N 1.28842 * 109.39098 * 359.76740 * 13 12 11 15 15 C 1.31066 * 107.99355 * 0.37634 * 14 13 12 16 16 C 1.50706 * 126.66316 * 179.89614 * 15 14 13 17 17 C 1.53000 * 109.47116 * 269.68592 * 16 15 14 18 18 C 1.50696 * 109.47110 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99916 * 269.72502 * 18 17 16 20 20 C 1.38238 * 119.99660 * 179.76617 * 19 18 17 21 21 C 1.38238 * 119.99880 * 0.51208 * 20 19 18 22 22 C 1.38234 * 120.00082 * 359.74153 * 21 20 19 23 23 C 1.38234 * 120.00224 * 0.02562 * 22 21 20 24 24 H 0.97008 * 120.00223 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46984 * 60.00581 * 9 7 2 26 26 H 1.08999 * 109.47382 * 299.99796 * 9 7 2 27 27 H 1.09005 * 109.46886 * 60.00574 * 10 9 7 28 28 H 1.08999 * 109.47335 * 300.00302 * 10 9 7 29 29 H 1.09000 * 109.46646 * 29.68005 * 16 15 14 30 30 H 1.09000 * 109.47248 * 149.68723 * 16 15 14 31 31 H 1.09000 * 109.47214 * 300.00167 * 17 16 15 32 32 H 1.09008 * 109.47142 * 59.99333 * 17 16 15 33 33 H 1.07996 * 120.00031 * 0.02562 * 19 18 17 34 34 H 1.07997 * 120.00195 * 180.23214 * 20 19 18 35 35 H 1.08001 * 120.00153 * 179.72639 * 21 20 19 36 36 H 1.07999 * 120.00024 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00475 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0009 12 7 6.2528 -2.6363 -1.0389 13 7 7.4797 -2.6359 -0.6490 14 7 7.5193 -2.6312 0.6388 15 6 6.2858 -2.6366 1.0819 16 6 5.8476 -2.6362 2.5238 17 6 5.6990 -4.0785 3.0121 18 6 5.2614 -4.0781 4.4541 19 6 6.2062 -4.0840 5.4632 20 6 5.8048 -4.0787 6.7860 21 6 4.4584 -4.0783 7.0996 22 6 3.5136 -4.0777 6.0906 23 6 3.9151 -4.0781 4.7678 24 1 -0.4851 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1506 -0.8908 28 1 3.6584 -3.1503 0.8892 29 1 6.5936 -2.1224 3.1301 30 1 4.8905 -2.1222 2.6125 31 1 4.9531 -4.5924 2.4058 32 1 6.6561 -4.5927 2.9233 33 1 7.2580 -4.0885 5.2180 34 1 6.5429 -4.0795 7.5743 35 1 4.1447 -4.0787 8.1331 36 1 2.4618 -4.0778 6.3356 37 1 3.1770 -4.0781 3.9794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213344180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = 119.243475 kcal Electronic energy + Delta-G solvation = -19943.925112 eV Core-core repulsion = 16916.111925 eV Total energy + Delta-G solvation = -3027.813186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.82199 -39.41086 -36.09591 -35.01026 -33.22023 -32.14334 -30.97720 -30.81535 -29.06792 -26.24833 -24.79778 -23.13118 -22.66011 -22.00777 -21.04330 -20.77086 -17.60634 -17.01134 -16.48231 -16.23754 -15.55775 -15.41012 -14.74704 -14.47428 -14.41680 -13.65063 -13.43364 -13.38663 -13.05971 -12.95651 -12.51368 -12.24622 -12.17328 -11.97476 -11.44190 -11.30940 -11.22787 -11.11797 -10.94367 -10.79678 -10.49240 -10.13695 -10.09650 -9.68260 -9.61600 -9.01118 -8.81304 -8.81041 -6.32022 -4.35699 1.20658 1.31110 1.62218 2.45534 2.52711 3.14953 3.23087 3.25634 3.66816 4.10027 4.21629 4.53266 4.72071 4.77482 4.91491 4.98032 5.03260 5.04236 5.07163 5.26298 5.39950 5.42466 5.52357 5.54605 5.75551 5.78423 5.85127 5.86927 5.97656 5.99711 6.09754 6.36092 6.42756 6.45584 6.52628 6.79112 6.83724 6.90569 7.37431 8.15196 8.66633 8.95444 9.27166 10.79794 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.005756 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.746410 B = 4863.432191 C = 6488.597382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.080 0.920 9 C -0.022 4.022 10 C 0.118 3.882 11 N -0.289 5.289 12 N -0.095 5.095 13 N -0.094 5.094 14 N -0.313 5.313 15 C 0.179 3.821 16 C -0.034 4.034 17 C -0.075 4.075 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.268 0.732 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.278 -8.206 12.597 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.098 0.902 9 C -0.061 4.061 10 C -0.001 4.001 11 N -0.091 5.091 12 N -0.081 5.081 13 N -0.088 5.088 14 N -0.164 5.164 15 C -0.099 4.099 16 C -0.075 4.075 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.129 4.129 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.091 -8.087 11.540 16.769 hybrid contribution -0.542 1.028 0.515 1.271 sum 8.549 -7.059 12.054 16.377 Atomic orbital electron populations 1.69865 1.06210 1.27476 1.49073 1.24884 0.94708 0.99049 0.93782 0.86851 0.80279 0.83684 0.78993 1.19882 1.20833 1.19171 1.20698 0.87530 0.95189 1.53584 0.90194 1.19964 0.98559 0.89461 0.98083 1.22675 0.68349 1.03539 1.05579 1.49035 1.11735 1.44710 1.03603 1.78834 0.97618 1.18198 1.13463 1.78513 1.10373 1.16122 1.03758 1.74876 1.18011 1.19691 1.03836 1.25884 0.86815 1.02790 0.94424 1.20194 1.04084 0.98454 0.84729 1.20557 1.02882 0.95490 0.92406 1.19744 0.93537 1.00198 0.94685 1.21082 0.99368 1.00293 0.92527 1.21125 0.96000 1.00532 0.96333 1.21165 0.93287 1.00598 0.99239 1.21189 0.99707 0.99765 0.92859 1.21195 0.95425 0.99347 0.96894 0.92176 0.95611 0.95545 0.87392 0.87671 0.87750 0.88120 0.90518 0.90023 0.85935 0.86225 0.86306 0.85925 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.53 -13.36 9.66 -34.44 -0.33 -13.69 16 8 H 0.08 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.02 -0.47 4.37 -27.88 -0.12 -0.59 16 10 C 0.12 1.99 6.00 -4.04 -0.02 1.97 16 11 N -0.29 -5.04 3.35 -58.26 -0.19 -5.23 16 12 N -0.10 -1.85 13.29 60.35 0.80 -1.05 16 13 N -0.09 -1.85 13.43 60.35 0.81 -1.04 16 14 N -0.31 -5.65 12.36 32.70 0.40 -5.25 16 15 C 0.18 2.86 7.39 -155.43 -1.15 1.71 16 16 C -0.03 -0.42 5.34 -27.88 -0.15 -0.57 16 17 C -0.07 -0.78 5.33 -27.89 -0.15 -0.93 16 18 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 19 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 26 H 0.03 0.59 7.57 -51.93 -0.39 0.20 16 27 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 28 H 0.11 1.51 7.74 -51.93 -0.40 1.11 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.25 7.81 -51.93 -0.41 0.84 16 31 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.08 0.83 8.08 -51.92 -0.42 0.41 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -30.11 322.20 -6.70 -36.81 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.96 Total: -1.17 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -4.52 Total: -19.19 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 2.60 Total: -37.07 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.11 -6.70 -36.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213344180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.051 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds