Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48504 * 109.46921 * 269.99950 * 3 2 1 5 5 H 1.48498 * 109.47201 * 30.00397 * 3 2 1 6 6 H 1.48500 * 109.46995 * 150.00430 * 3 2 1 7 7 C 1.37877 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99723 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46882 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47032 * 180.02562 * 10 9 7 12 12 N 1.29018 * 126.43922 * 270.02752 * 11 10 9 13 13 N 1.28740 * 108.81268 * 179.97438 * 12 11 10 14 14 N 1.28842 * 109.39098 * 359.76740 * 13 12 11 15 15 C 1.31066 * 107.99355 * 0.37634 * 14 13 12 16 16 C 1.50706 * 126.66316 * 179.89614 * 15 14 13 17 17 C 1.53000 * 109.47116 * 269.68592 * 16 15 14 18 18 C 1.50696 * 109.47110 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99916 * 269.72502 * 18 17 16 20 20 C 1.38238 * 119.99660 * 179.76617 * 19 18 17 21 21 C 1.38238 * 119.99880 * 0.51208 * 20 19 18 22 22 C 1.38234 * 120.00082 * 359.74153 * 21 20 19 23 23 C 1.38234 * 120.00224 * 0.02562 * 22 21 20 24 24 H 0.97008 * 120.00223 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46984 * 60.00581 * 9 7 2 26 26 H 1.08999 * 109.47382 * 299.99796 * 9 7 2 27 27 H 1.09005 * 109.46886 * 60.00574 * 10 9 7 28 28 H 1.08999 * 109.47335 * 300.00302 * 10 9 7 29 29 H 1.09000 * 109.46646 * 29.68005 * 16 15 14 30 30 H 1.09000 * 109.47248 * 149.68723 * 16 15 14 31 31 H 1.09000 * 109.47214 * 300.00167 * 17 16 15 32 32 H 1.09008 * 109.47142 * 59.99333 * 17 16 15 33 33 H 1.07996 * 120.00031 * 0.02562 * 19 18 17 34 34 H 1.07997 * 120.00195 * 180.23214 * 20 19 18 35 35 H 1.08001 * 120.00153 * 179.72639 * 21 20 19 36 36 H 1.07999 * 120.00024 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00475 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0009 12 7 6.2528 -2.6363 -1.0389 13 7 7.4797 -2.6359 -0.6490 14 7 7.5193 -2.6312 0.6388 15 6 6.2858 -2.6366 1.0819 16 6 5.8476 -2.6362 2.5238 17 6 5.6990 -4.0785 3.0121 18 6 5.2614 -4.0781 4.4541 19 6 6.2062 -4.0840 5.4632 20 6 5.8048 -4.0787 6.7860 21 6 4.4584 -4.0783 7.0996 22 6 3.5136 -4.0777 6.0906 23 6 3.9151 -4.0781 4.7678 24 1 -0.4851 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1506 -0.8908 28 1 3.6584 -3.1503 0.8892 29 1 6.5936 -2.1224 3.1301 30 1 4.8905 -2.1222 2.6125 31 1 4.9531 -4.5924 2.4058 32 1 6.6561 -4.5927 2.9233 33 1 7.2580 -4.0885 5.2180 34 1 6.5429 -4.0795 7.5743 35 1 4.1447 -4.0787 8.1331 36 1 2.4618 -4.0778 6.3356 37 1 3.1770 -4.0781 3.9794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213344180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = 103.157836 kcal Electronic energy + Delta-G solvation = -19944.622637 eV Core-core repulsion = 16916.111925 eV Total energy + Delta-G solvation = -3028.510712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.21307 -40.14260 -37.52845 -36.04560 -35.08244 -33.33818 -32.46153 -31.68706 -30.08874 -27.87992 -25.82151 -24.64709 -23.42336 -23.37644 -22.34636 -21.75532 -19.36843 -18.10404 -17.83660 -17.49315 -16.46392 -16.38088 -16.34768 -15.74546 -15.62881 -14.88723 -14.69159 -14.27229 -14.19486 -14.05701 -13.88838 -13.66678 -13.34683 -13.05697 -13.01583 -12.90644 -12.30808 -12.26243 -12.11247 -11.90998 -11.84942 -11.68507 -11.66283 -11.55499 -11.03999 -10.84820 -9.73942 -9.56591 -8.36456 -6.42217 0.21698 0.50346 0.58274 1.09783 1.14756 1.30155 1.34718 1.40867 2.27612 2.86664 2.99336 3.02548 3.29634 3.78272 3.94601 4.02552 4.04956 4.13984 4.25489 4.30699 4.32018 4.39003 4.40930 4.56639 4.65515 4.70520 4.71073 4.90189 4.96237 5.05952 5.16489 5.21036 5.24949 5.26116 5.49753 5.65481 5.71396 5.77406 6.12418 6.19861 6.65246 7.23294 7.54741 8.78393 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.005756 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.746410 B = 4863.432191 C = 6488.597382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.525 4.525 8 H 0.060 0.940 9 C -0.018 4.018 10 C 0.127 3.873 11 N -0.293 5.293 12 N -0.115 5.115 13 N -0.110 5.110 14 N -0.327 5.327 15 C 0.194 3.806 16 C -0.032 4.032 17 C -0.066 4.066 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.128 4.128 24 H 0.269 0.731 25 H 0.031 0.969 26 H 0.014 0.986 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -8.291 14.130 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.056 4.056 10 C 0.008 3.992 11 N -0.095 5.095 12 N -0.101 5.101 13 N -0.103 5.103 14 N -0.178 5.178 15 C -0.083 4.083 16 C -0.072 4.072 17 C -0.105 4.105 18 C -0.090 4.090 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.146 4.146 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.131 0.869 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.336 -8.181 13.075 18.567 hybrid contribution -0.926 0.984 0.098 1.355 sum 9.410 -7.196 13.173 17.716 Atomic orbital electron populations 1.69980 1.07777 1.28284 1.51322 1.25633 0.95301 1.02349 0.94022 0.85987 0.79599 0.80167 0.78884 1.20069 1.20522 1.17835 1.20975 0.89621 0.94221 1.51567 0.92147 1.19805 0.95970 0.92251 0.97610 1.22540 0.68221 1.01077 1.07402 1.48994 1.11664 1.45104 1.03719 1.78809 0.97816 1.19057 1.14409 1.78495 1.10609 1.16593 1.04600 1.74854 1.19036 1.20524 1.03345 1.26518 0.86026 1.00408 0.95368 1.20406 1.04431 0.99890 0.82480 1.20473 1.03207 0.94207 0.92571 1.19740 0.93596 1.00946 0.94675 1.21326 1.00000 0.99959 0.92709 1.21445 0.96508 0.99720 0.96773 1.21471 0.93367 0.99853 1.00116 1.21417 1.00583 0.99955 0.92927 1.21329 0.95743 1.00152 0.97351 0.92156 0.95029 0.96750 0.86919 0.84782 0.86310 0.87962 0.90355 0.89592 0.84583 0.84104 0.84387 0.85042 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 13.96 21.45 0.30 -53.31 16 2 C 0.03 1.41 5.47 84.66 0.46 1.87 16 3 Si 0.93 41.51 27.47 68.60 1.88 43.39 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 7 C -0.53 -26.13 9.66 25.60 0.25 -25.89 16 8 H 0.06 3.18 7.99 -2.91 -0.02 3.16 16 9 C -0.02 -0.72 4.37 29.85 0.13 -0.59 16 10 C 0.13 4.06 6.00 86.38 0.52 4.58 16 11 N -0.29 -9.71 3.35 -338.25 -1.13 -10.84 16 12 N -0.11 -4.32 13.29 37.02 0.49 -3.83 16 13 N -0.11 -4.18 13.43 37.01 0.50 -3.68 16 14 N -0.33 -11.27 12.36 -50.45 -0.62 -11.89 16 15 C 0.19 5.81 7.39 138.14 1.02 6.83 16 16 C -0.03 -0.70 5.34 29.85 0.16 -0.54 16 17 C -0.07 -1.24 5.33 29.85 0.16 -1.08 16 18 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 19 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 20 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 21 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 24 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 25 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 26 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 27 H 0.11 3.53 8.14 -2.38 -0.02 3.52 16 28 H 0.13 3.52 7.74 -2.39 -0.02 3.50 16 29 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.10 2.27 7.81 -2.39 -0.02 2.25 16 31 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 32 H 0.09 1.55 8.08 -2.38 -0.02 1.53 16 33 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -63.46 322.20 6.12 -57.34 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.00 Total: 9.57 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.70 Total: -26.75 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -0.47 Total: -83.55 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.88 Total: 43.39 kcal Total: -63.46 6.12 -57.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213344180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.498 kcal (2) G-P(sol) polarization free energy of solvation -63.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds