Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35842 * 116.99999 * 2 1 4 4 C 1.37794 * 120.36682 * 359.72618 * 3 2 1 5 5 C 1.39158 * 120.75576 * 179.71985 * 4 3 2 6 6 C 1.36330 * 121.10745 * 0.56593 * 5 4 3 7 7 C 1.40079 * 119.78899 * 359.72155 * 6 5 4 8 8 C 1.40602 * 120.36415 * 180.02562 * 3 2 1 9 9 C 1.40815 * 122.14548 * 359.97438 * 8 3 2 10 10 C 1.36055 * 118.86498 * 180.02562 * 9 8 3 11 11 N 1.32704 * 121.95929 * 359.97438 * 10 9 8 12 12 C 1.31893 * 122.64384 * 0.02562 * 11 10 9 13 13 N 1.38488 * 120.14286 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99552 * 64.37598 * 13 12 11 15 15 C 1.46900 * 111.00180 * 300.42739 * 13 12 11 16 16 C 1.50698 * 109.47277 * 189.99701 * 15 13 12 17 17 H 1.07999 * 119.99633 * 359.97438 * 16 15 13 18 18 C 1.37871 * 120.00078 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46761 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46945 * 119.99395 * 20 18 16 23 23 H 1.48497 * 109.46939 * 239.99751 * 20 18 16 24 24 H 1.09000 * 109.46810 * 300.00043 * 1 2 3 25 25 H 1.09000 * 109.47204 * 59.99561 * 1 2 3 26 26 H 1.09000 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.62131 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.45184 * 180.28478 * 5 4 3 29 29 H 1.07991 * 120.10268 * 179.74117 * 6 5 4 30 30 H 1.08000 * 120.56757 * 359.97438 * 9 8 3 31 31 H 1.08000 * 119.01991 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47389 * 54.23834 * 14 13 12 33 33 H 1.09004 * 109.47078 * 174.23481 * 14 13 12 34 34 H 1.08996 * 109.47381 * 294.23719 * 14 13 12 35 35 H 1.08998 * 109.46718 * 309.99877 * 15 13 12 36 36 H 1.08999 * 109.46851 * 69.99412 * 15 13 12 37 37 H 0.97003 * 119.99909 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.3027 2.3708 -0.0057 5 6 1.9260 3.6150 0.0001 6 6 3.2851 3.7219 0.0000 7 6 4.0743 2.5645 -0.0001 8 6 3.4494 1.2929 -0.0005 9 6 4.2673 0.1466 -0.0006 10 6 5.6187 0.3040 -0.0006 11 7 6.1861 1.5037 -0.0011 12 6 5.4864 2.6217 -0.0011 13 7 6.1326 3.8465 -0.0021 14 6 6.9019 4.0347 -1.2394 15 6 6.9935 3.9887 1.1797 16 6 7.4844 5.4102 1.2756 17 1 7.1871 6.1354 0.5326 18 6 8.3140 5.7846 2.3111 19 7 8.6766 4.9013 3.2156 20 14 8.9221 7.5469 2.4304 21 1 8.3740 8.3373 1.2989 22 1 8.4701 8.1406 3.7143 23 1 10.4059 7.5635 2.3724 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2242 2.3140 -0.0106 28 1 1.3231 4.5110 0.0002 29 1 3.7518 4.6957 0.0004 30 1 3.8294 -0.8406 0.0003 31 1 6.2484 -0.5734 -0.0010 32 1 6.2474 3.8925 -2.0994 33 1 7.3154 5.0431 -1.2603 34 1 7.7137 3.3083 -1.2766 35 1 6.4247 3.7395 2.0755 36 1 7.8458 3.3150 1.0914 37 1 9.2606 5.1647 3.9440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234903207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = 32.668634 kcal Electronic energy + Delta-G solvation = -20406.434688 eV Core-core repulsion = 17342.574584 eV Total energy + Delta-G solvation = -3063.860104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86250 -39.11783 -36.68752 -35.96068 -32.68708 -31.55289 -30.60259 -28.85854 -27.46560 -27.22763 -25.35487 -23.36647 -23.28970 -21.88156 -20.40103 -18.22828 -17.47459 -16.61892 -16.34137 -16.01459 -15.88342 -15.01883 -14.77171 -14.47940 -14.28793 -14.03027 -13.18621 -13.04651 -13.01351 -12.80016 -12.26583 -12.01759 -11.99555 -11.55783 -11.32947 -11.07459 -10.99947 -10.93032 -10.69620 -10.54760 -10.05829 -9.44743 -9.32356 -9.02932 -8.82968 -8.46643 -7.62563 -7.36524 -6.02488 -4.05050 0.70372 1.12353 2.19135 3.08618 3.31171 3.31936 3.39029 3.43344 4.32615 4.37379 4.55551 4.75525 4.77424 4.95397 4.96606 5.09063 5.16446 5.25524 5.32669 5.37149 5.43256 5.61169 5.78058 5.95966 6.07968 6.11167 6.30732 6.40163 6.45149 6.68038 6.70530 6.80934 6.84542 7.27547 7.34172 7.41044 7.78641 7.95236 8.11143 8.44592 8.51667 9.01443 9.58594 11.08374 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.004634 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.477098 B = 6040.272609 C = 6471.468517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.119 3.881 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.083 4.083 7 C -0.064 4.064 8 C -0.033 4.033 9 C -0.165 4.165 10 C 0.089 3.911 11 N -0.514 5.514 12 C 0.362 3.638 13 N -0.496 5.496 14 C 0.046 3.954 15 C 0.202 3.798 16 C -0.511 4.511 17 H 0.067 0.933 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.027 0.973 36 H 0.011 0.989 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.524 -7.888 -7.708 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.074 3.926 4 C -0.217 4.217 5 C -0.124 4.124 6 C -0.103 4.103 7 C -0.068 4.068 8 C -0.039 4.039 9 C -0.185 4.185 10 C -0.056 4.056 11 N -0.226 5.226 12 C 0.120 3.880 13 N -0.220 5.220 14 C -0.101 4.101 15 C 0.079 3.921 16 C -0.550 4.550 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.750 -7.824 -7.520 18.312 hybrid contribution -0.223 0.267 0.311 0.467 sum -14.973 -7.557 -7.209 18.256 Atomic orbital electron populations 1.23046 0.78460 1.03778 1.01401 1.86004 1.21178 1.26749 1.88678 1.18673 0.90896 0.84441 0.98597 1.21127 0.99702 0.92260 1.08623 1.20621 0.94826 0.96626 1.00338 1.21059 0.92847 0.98915 0.97512 1.18494 0.93697 0.92631 1.01938 1.17431 0.90413 0.93635 1.02442 1.21632 0.94620 0.98353 1.03920 1.21986 0.92505 0.94705 0.96433 1.67810 1.42394 0.98858 1.13580 1.20466 0.89304 0.89108 0.89171 1.60269 1.34153 1.21358 1.06185 1.22189 0.95777 1.02702 0.89422 1.19805 0.89950 0.97563 0.84800 1.21151 1.28511 0.94744 1.10553 0.91534 1.24982 0.96245 0.97688 0.95562 1.69989 1.35607 1.33928 1.13886 0.86420 0.78388 0.84466 0.78009 1.19572 1.21024 1.21081 0.92612 0.92670 0.88320 0.85637 0.85652 0.83479 0.84695 0.83570 0.93710 0.89887 0.94954 0.95451 0.97072 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.31 -3.91 9.83 -19.25 -0.19 -4.10 16 3 C 0.12 1.72 6.70 -38.85 -0.26 1.46 16 4 C -0.20 -2.50 9.04 -39.40 -0.36 -2.86 16 5 C -0.11 -1.43 9.94 -39.93 -0.40 -1.83 16 6 C -0.08 -1.39 9.55 -39.58 -0.38 -1.76 16 7 C -0.06 -1.18 5.75 -106.72 -0.61 -1.80 16 8 C -0.03 -0.56 5.75 -106.71 -0.61 -1.18 16 9 C -0.17 -2.61 9.64 -39.39 -0.38 -2.99 16 10 C 0.09 1.52 11.06 -17.96 -0.20 1.32 16 11 N -0.51 -10.71 9.77 -12.43 -0.12 -10.83 16 12 C 0.36 7.62 5.31 -155.11 -0.82 6.79 16 13 N -0.50 -11.13 3.91 -182.01 -0.71 -11.84 16 14 C 0.05 0.93 9.17 60.06 0.55 1.48 16 15 C 0.20 5.43 4.46 -4.98 -0.02 5.41 16 16 C -0.51 -14.26 8.54 -34.44 -0.29 -14.55 16 17 H 0.07 1.80 7.10 -52.49 -0.37 1.42 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.13 1.19 6.27 -52.49 -0.33 0.86 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.15 2.51 7.59 -52.49 -0.40 2.11 16 30 H 0.14 1.78 7.72 -52.49 -0.41 1.38 16 31 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.08 1.67 6.91 -51.93 -0.36 1.31 16 34 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.01 0.33 8.07 -51.93 -0.42 -0.09 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -32.20 313.62 -8.21 -40.41 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.74 Total: -0.92 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.89 Total: -7.77 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.10 Total: -48.81 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.20 -8.21 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234903207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.079 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds