Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35842 * 116.99999 * 2 1 4 4 C 1.37794 * 120.36682 * 359.72618 * 3 2 1 5 5 C 1.39158 * 120.75576 * 179.71985 * 4 3 2 6 6 C 1.36330 * 121.10745 * 0.56593 * 5 4 3 7 7 C 1.40079 * 119.78899 * 359.72155 * 6 5 4 8 8 C 1.40602 * 120.36415 * 180.02562 * 3 2 1 9 9 C 1.40815 * 122.14548 * 359.97438 * 8 3 2 10 10 C 1.36055 * 118.86498 * 180.02562 * 9 8 3 11 11 N 1.32704 * 121.95929 * 359.97438 * 10 9 8 12 12 C 1.31893 * 122.64384 * 0.02562 * 11 10 9 13 13 N 1.38488 * 120.14286 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99552 * 64.37598 * 13 12 11 15 15 C 1.46900 * 111.00180 * 300.42739 * 13 12 11 16 16 C 1.50698 * 109.47277 * 189.99701 * 15 13 12 17 17 H 1.07999 * 119.99633 * 359.97438 * 16 15 13 18 18 C 1.37871 * 120.00078 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46761 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46945 * 119.99395 * 20 18 16 23 23 H 1.48497 * 109.46939 * 239.99751 * 20 18 16 24 24 H 1.09000 * 109.46810 * 300.00043 * 1 2 3 25 25 H 1.09000 * 109.47204 * 59.99561 * 1 2 3 26 26 H 1.09000 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.62131 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.45184 * 180.28478 * 5 4 3 29 29 H 1.07991 * 120.10268 * 179.74117 * 6 5 4 30 30 H 1.08000 * 120.56757 * 359.97438 * 9 8 3 31 31 H 1.08000 * 119.01991 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47389 * 54.23834 * 14 13 12 33 33 H 1.09004 * 109.47078 * 174.23481 * 14 13 12 34 34 H 1.08996 * 109.47381 * 294.23719 * 14 13 12 35 35 H 1.08998 * 109.46718 * 309.99877 * 15 13 12 36 36 H 1.08999 * 109.46851 * 69.99412 * 15 13 12 37 37 H 0.97003 * 119.99909 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.3027 2.3708 -0.0057 5 6 1.9260 3.6150 0.0001 6 6 3.2851 3.7219 0.0000 7 6 4.0743 2.5645 -0.0001 8 6 3.4494 1.2929 -0.0005 9 6 4.2673 0.1466 -0.0006 10 6 5.6187 0.3040 -0.0006 11 7 6.1861 1.5037 -0.0011 12 6 5.4864 2.6217 -0.0011 13 7 6.1326 3.8465 -0.0021 14 6 6.9019 4.0347 -1.2394 15 6 6.9935 3.9887 1.1797 16 6 7.4844 5.4102 1.2756 17 1 7.1871 6.1354 0.5326 18 6 8.3140 5.7846 2.3111 19 7 8.6766 4.9013 3.2156 20 14 8.9221 7.5469 2.4304 21 1 8.3740 8.3373 1.2989 22 1 8.4701 8.1406 3.7143 23 1 10.4059 7.5635 2.3724 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2242 2.3140 -0.0106 28 1 1.3231 4.5110 0.0002 29 1 3.7518 4.6957 0.0004 30 1 3.8294 -0.8406 0.0003 31 1 6.2484 -0.5734 -0.0010 32 1 6.2474 3.8925 -2.0994 33 1 7.3154 5.0431 -1.2603 34 1 7.7137 3.3083 -1.2766 35 1 6.4247 3.7395 2.0755 36 1 7.8458 3.3150 1.0914 37 1 9.2606 5.1647 3.9440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234903207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = 12.189915 kcal Electronic energy + Delta-G solvation = -20407.322712 eV Core-core repulsion = 17342.574584 eV Total energy + Delta-G solvation = -3064.748128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11469 -40.26509 -38.07668 -37.35442 -34.76954 -32.90491 -31.88298 -30.11026 -29.25069 -28.21003 -27.04880 -24.93144 -24.58269 -23.38009 -21.86160 -19.33128 -18.90399 -18.34089 -17.87024 -17.25240 -16.83985 -16.65621 -16.25043 -15.75041 -15.66723 -15.51343 -14.81207 -14.50991 -14.29150 -14.12752 -13.83169 -13.28799 -13.18655 -13.05138 -12.82168 -12.71025 -12.55028 -12.41212 -12.08861 -12.02693 -11.93611 -11.43365 -10.65481 -10.64887 -10.56508 -10.04399 -9.44908 -8.56759 -8.20776 -6.33153 -0.58210 -0.10944 0.93007 1.43376 1.44309 1.58482 2.08336 2.16704 2.40998 2.95503 3.04576 3.12777 3.62199 3.65678 3.84884 3.98203 4.07573 4.22357 4.38148 4.44940 4.45964 4.47046 4.63594 4.67821 4.77258 4.78504 4.89732 4.96925 5.11641 5.14713 5.20788 5.29061 5.53015 5.53296 5.69220 5.71864 6.00374 6.03872 6.36871 6.63271 6.81132 7.04240 7.36666 8.91268 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.004634 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.477098 B = 6040.272609 C = 6471.468517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.125 3.875 4 C -0.191 4.191 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.075 4.075 8 C -0.060 4.060 9 C -0.141 4.141 10 C 0.062 3.938 11 N -0.546 5.546 12 C 0.320 3.680 13 N -0.491 5.491 14 C 0.052 3.948 15 C 0.227 3.773 16 C -0.524 4.524 17 H 0.075 0.925 18 C 0.000 4.000 19 N -0.937 5.937 20 Si 0.978 3.022 21 H -0.256 1.256 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.168 0.832 28 H 0.160 0.840 29 H 0.132 0.868 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.016 0.984 35 H -0.012 1.012 36 H -0.029 1.029 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.617 -7.643 -8.488 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.079 3.921 4 C -0.210 4.210 5 C -0.099 4.099 6 C -0.139 4.139 7 C -0.079 4.079 8 C -0.066 4.066 9 C -0.161 4.161 10 C -0.083 4.083 11 N -0.258 5.258 12 C 0.078 3.922 13 N -0.214 5.214 14 C -0.095 4.095 15 C 0.102 3.898 16 C -0.562 4.562 17 H 0.093 0.907 18 C -0.198 4.198 19 N -0.577 5.577 20 Si 0.801 3.199 21 H -0.180 1.180 22 H -0.204 1.204 23 H -0.205 1.205 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.185 0.815 28 H 0.178 0.822 29 H 0.150 0.850 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.007 0.993 36 H -0.011 1.011 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.874 -7.597 -8.326 21.131 hybrid contribution 0.498 0.002 0.529 0.727 sum -17.376 -7.595 -7.797 20.504 Atomic orbital electron populations 1.23451 0.75709 1.05954 1.02705 1.85996 1.23905 1.25668 1.88137 1.18705 0.90041 0.85954 0.97427 1.21560 1.01692 0.91027 1.06755 1.21030 0.93623 0.98566 0.96680 1.21033 0.94356 0.97711 1.00779 1.18576 0.92651 0.94361 1.02265 1.17706 0.92217 0.93127 1.03501 1.21965 0.93976 0.99469 1.00675 1.22385 0.93834 0.94155 0.97918 1.67648 1.43915 1.00114 1.14134 1.20500 0.90462 0.88530 0.92707 1.60107 1.32832 1.23329 1.05165 1.22161 0.95783 1.01892 0.89650 1.19272 0.88522 0.96451 0.85531 1.21470 1.28685 0.95169 1.10908 0.90730 1.26011 0.96185 1.02655 0.94902 1.70145 1.36372 1.36548 1.14669 0.85212 0.77768 0.78399 0.78484 1.17979 1.20421 1.20526 0.91424 0.91060 0.85975 0.81498 0.82197 0.84974 0.81745 0.81104 0.91026 0.90170 0.96540 0.99343 1.01101 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 113.37 1.11 1.28 16 2 O -0.32 -6.90 9.83 -91.78 -0.90 -7.80 16 3 C 0.12 3.25 6.70 22.74 0.15 3.40 16 4 C -0.19 -4.08 9.04 22.39 0.20 -3.88 16 5 C -0.08 -1.97 9.94 22.05 0.22 -1.75 16 6 C -0.12 -3.94 9.55 22.27 0.21 -3.73 16 7 C -0.07 -2.85 5.75 -21.22 -0.12 -2.97 16 8 C -0.06 -1.97 5.75 -21.22 -0.12 -2.09 16 9 C -0.14 -4.36 9.64 22.39 0.22 -4.15 16 10 C 0.06 2.15 11.06 84.05 0.93 3.08 16 11 N -0.55 -24.11 9.77 -193.23 -1.89 -25.99 16 12 C 0.32 14.25 5.31 133.93 0.71 14.97 16 13 N -0.49 -23.43 3.91 -729.76 -2.85 -26.29 16 14 C 0.05 2.21 9.17 127.69 1.17 3.38 16 15 C 0.23 13.11 4.46 85.56 0.38 13.49 16 16 C -0.52 -30.39 8.54 25.60 0.22 -30.17 16 17 H 0.07 4.11 7.10 -2.91 -0.02 4.09 16 18 C 0.00 0.02 5.46 84.65 0.46 0.49 16 19 N -0.94 -58.47 13.29 21.45 0.28 -58.18 16 20 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H 0.07 0.61 7.68 -2.39 -0.02 0.60 16 25 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.17 2.18 6.27 -2.91 -0.02 2.16 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.13 4.68 7.59 -2.92 -0.02 4.65 16 30 H 0.17 3.97 7.72 -2.91 -0.02 3.94 16 31 H 0.17 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 33 H 0.08 3.35 6.91 -2.38 -0.02 3.34 16 34 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 35 H -0.01 -0.74 8.05 -2.39 -0.02 -0.76 16 36 H -0.03 -1.85 8.07 -2.39 -0.02 -1.87 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -74.57 313.62 3.48 -71.08 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.07 Total: 9.17 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 5.74 Total: -8.65 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.46 Total: -110.46 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.90 Total: -7.80 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.57 3.48 -71.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234903207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.275 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds