Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36826 * 125.06435 * 2 1 4 4 C 1.34244 * 109.93190 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.50036 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47230 * 264.97519 * 5 4 3 7 7 N 1.46491 * 109.47504 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00471 * 179.97438 * 7 6 5 9 9 O 1.21689 * 119.99933 * 0.02562 * 8 7 6 10 10 C 1.46377 * 120.00484 * 179.97438 * 8 7 6 11 11 H 1.08001 * 119.99540 * 0.02562 * 10 8 7 12 12 C 1.40047 * 120.00281 * 179.97438 * 10 8 7 13 13 N 1.30668 * 120.00130 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99823 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47171 * 60.00391 * 14 12 10 16 16 H 1.48500 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47125 * 299.99917 * 14 12 10 18 18 C 1.46487 * 106.99688 * 0.02562 * 4 3 2 19 19 C 1.39624 * 134.03153 * 180.02562 * 18 4 3 20 20 C 1.36626 * 119.76497 * 179.97438 * 19 18 4 21 21 C 1.38834 * 120.52624 * 359.97438 * 20 19 18 22 22 C 1.37749 * 120.66679 * 0.02562 * 21 20 19 23 23 C 1.37694 * 125.06287 * 179.97438 * 2 1 3 24 24 H 1.09009 * 109.47072 * 90.03089 * 1 2 3 25 25 H 1.08996 * 109.47341 * 210.02367 * 1 2 3 26 26 H 1.08990 * 109.47464 * 330.02870 * 1 2 3 27 27 H 1.08005 * 125.03598 * 0.26106 * 3 2 1 28 28 H 1.09001 * 109.47143 * 24.97313 * 5 4 3 29 29 H 1.09001 * 109.46969 * 144.97563 * 5 4 3 30 30 H 1.09000 * 109.47279 * 300.00619 * 6 5 4 31 31 H 1.09001 * 109.47108 * 60.00130 * 6 5 4 32 32 H 0.97006 * 120.00126 * 0.02562 * 7 6 5 33 33 H 0.96997 * 120.00386 * 179.97438 * 13 12 10 34 34 H 1.07999 * 120.11823 * 359.94311 * 19 18 4 35 35 H 1.08004 * 119.73591 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.66385 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.10785 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1199 0.0000 4 6 3.5469 0.7695 0.0006 5 6 4.7285 1.7049 0.0013 6 6 5.2075 1.9227 -1.4354 7 7 6.3557 2.8324 -1.4348 8 6 6.9483 3.1704 -2.5971 9 8 6.5293 2.7203 -3.6471 10 6 8.0952 4.0799 -2.5965 11 1 8.4668 4.4797 -1.6646 12 6 8.7114 4.4307 -3.8043 13 7 8.2621 3.9465 -4.9317 14 14 10.1755 5.5908 -3.8034 15 1 11.2746 5.0001 -2.9983 16 1 10.6408 5.8016 -5.1977 17 1 9.7746 6.8934 -3.2135 18 6 3.5946 -0.6946 0.0003 19 6 4.6294 -1.6319 0.0011 20 6 4.3360 -2.9663 0.0011 21 6 3.0165 -3.3982 0.0009 22 6 1.9802 -2.4907 0.0001 23 6 2.2560 -1.1271 0.0005 24 1 -0.3634 -0.0006 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3634 0.8901 0.5133 27 1 1.8834 2.1355 0.0040 28 1 4.4349 2.6607 0.4352 29 1 5.5354 1.2705 0.5914 30 1 5.5009 0.9668 -1.8694 31 1 4.4005 2.3571 -2.0255 32 1 6.6899 3.1910 -0.5977 33 1 8.6886 4.1898 -5.7683 34 1 5.6582 -1.3033 0.0012 35 1 5.1369 -3.6909 0.0013 36 1 2.8005 -4.4564 0.0013 37 1 0.9571 -2.8366 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258760229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = 14.609167 kcal Electronic energy + Delta-G solvation = -19597.916409 eV Core-core repulsion = 16533.273188 eV Total energy + Delta-G solvation = -3064.643221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29784 -37.27670 -37.00576 -34.66545 -32.78239 -32.13177 -30.31056 -29.85579 -28.46586 -26.49244 -25.24193 -22.67051 -22.37359 -21.27125 -19.63102 -19.28502 -17.17100 -16.56015 -16.49753 -15.47215 -15.36004 -15.21085 -14.40609 -14.31495 -13.99666 -13.87559 -13.73743 -12.98774 -12.87546 -12.67388 -12.32771 -12.09756 -11.98600 -11.51506 -11.45965 -11.10216 -11.03939 -10.99299 -10.76509 -10.38421 -10.37174 -10.19249 -9.42948 -8.78257 -8.12430 -7.56655 -7.44466 -7.38140 -6.11256 -4.56850 1.18733 1.68271 2.72422 2.79527 3.20083 3.24535 3.26675 3.97777 4.16558 4.56614 4.66897 4.69637 4.83100 4.92223 4.97904 5.08814 5.14827 5.23072 5.40466 5.51333 5.59990 5.75609 5.80268 5.87592 5.92499 5.97183 6.08655 6.20716 6.50645 6.67710 6.73337 6.79559 6.83365 6.90964 7.26482 7.33197 7.49616 8.02569 8.20826 8.40881 9.09138 9.64326 10.68252 10.87704 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.003462 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.157833 B = 8085.325164 C = 8516.102693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.491 5.491 3 C 0.047 3.953 4 C -0.152 4.152 5 C -0.054 4.054 6 C 0.141 3.859 7 N -0.769 5.769 8 C 0.554 3.446 9 O -0.582 6.582 10 C -0.547 4.547 11 H 0.067 0.933 12 C 0.087 3.913 13 N -0.770 5.770 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.100 4.100 19 C -0.062 4.062 20 C -0.153 4.153 21 C -0.101 4.101 22 C -0.135 4.135 23 C 0.096 3.904 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -9.492 12.928 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.175 5.175 3 C -0.077 4.077 4 C -0.160 4.160 5 C -0.092 4.092 6 C 0.015 3.985 7 N -0.425 5.425 8 C 0.358 3.642 9 O -0.464 6.464 10 C -0.584 4.584 11 H 0.085 0.915 12 C -0.132 4.132 13 N -0.398 5.398 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.104 4.104 19 C -0.081 4.081 20 C -0.172 4.172 21 C -0.120 4.120 22 C -0.155 4.155 23 C -0.010 4.010 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.185 0.815 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.210 0.790 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.166 -9.801 11.923 20.950 hybrid contribution 0.677 0.742 0.337 1.059 sum -13.488 -9.060 12.259 20.354 Atomic orbital electron populations 1.21877 0.77471 1.03811 1.02852 1.43707 1.05611 1.04319 1.63856 1.21604 0.89951 0.90908 1.05209 1.20199 0.93731 0.91700 1.10326 1.20137 0.94284 0.96956 0.97851 1.20817 0.89653 0.94209 0.93778 1.46144 1.34256 1.52167 1.09938 1.18203 0.83293 0.81361 0.81363 1.90598 1.66847 1.58019 1.30983 1.20867 1.14496 1.29388 0.93655 0.91508 1.25707 0.97196 0.95259 0.95054 1.70016 1.36033 1.35641 0.98148 0.86447 0.81708 0.80932 0.77696 1.19307 1.20628 1.19338 1.19123 0.92098 0.93044 1.06179 1.20363 0.98322 0.92046 0.97334 1.20611 0.96394 0.95499 1.04674 1.20756 0.92318 0.98620 1.00343 1.19928 0.99195 0.89213 1.07204 1.18257 0.90149 0.88268 1.04321 0.91445 0.90442 0.90039 0.81527 0.91114 0.91018 0.93457 0.93659 0.78981 0.92138 0.85864 0.86170 0.86093 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.03 59.84 0.66 1.27 16 2 N -0.49 -5.91 3.18 -121.81 -0.39 -6.30 16 3 C 0.05 0.60 11.20 -16.73 -0.19 0.42 16 4 C -0.15 -2.26 5.57 -102.71 -0.57 -2.84 16 5 C -0.05 -0.82 5.86 -27.88 -0.16 -0.98 16 6 C 0.14 2.86 5.66 -4.05 -0.02 2.84 16 7 N -0.77 -17.80 5.55 -61.73 -0.34 -18.14 16 8 C 0.55 16.33 7.75 -12.99 -0.10 16.23 16 9 O -0.58 -19.60 15.02 5.20 0.08 -19.52 16 10 C -0.55 -15.82 9.54 -35.63 -0.34 -16.16 16 11 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 12 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 13 N -0.77 -23.67 11.83 55.55 0.66 -23.01 16 14 Si 0.91 20.48 29.56 -169.99 -5.02 15.46 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 C -0.10 -1.52 6.35 -105.14 -0.67 -2.19 16 19 C -0.06 -0.89 10.05 -39.65 -0.40 -1.29 16 20 C -0.15 -1.88 9.97 -39.94 -0.40 -2.28 16 21 C -0.10 -1.14 10.01 -39.54 -0.40 -1.54 16 22 C -0.13 -1.59 9.97 -39.43 -0.39 -1.98 16 23 C 0.10 1.32 6.81 -83.99 -0.57 0.75 16 24 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.08 0.48 8.10 -51.93 -0.42 0.05 16 26 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.17 1.67 8.06 -52.48 -0.42 1.24 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.38 7.56 8.45 -40.82 -0.35 7.21 16 33 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -37.25 323.55 -8.75 -46.00 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.96 Total: 5.98 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -3.65 Total: -5.36 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.07 Total: -47.45 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.08 Total: -19.52 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.25 -8.75 -46.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258760229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.613 kcal (2) G-P(sol) polarization free energy of solvation -37.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds