Wall clock time and date at job start Mon Mar 30 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46917 * 2 1 4 4 C 1.50698 * 109.47395 * 120.00015 * 2 1 3 5 5 H 1.08002 * 119.99592 * 120.00028 * 4 2 1 6 6 C 1.37874 * 120.00013 * 300.00374 * 4 2 1 7 7 N 1.31515 * 120.00093 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00067 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46973 * 90.00168 * 8 6 4 10 10 H 1.48498 * 109.47041 * 209.99580 * 8 6 4 11 11 H 1.48500 * 109.47220 * 330.00001 * 8 6 4 12 12 N 1.46505 * 109.47484 * 240.00617 * 2 1 3 13 13 C 1.34771 * 120.00009 * 85.26807 * 12 2 1 14 14 O 1.21650 * 120.00215 * 355.05068 * 13 12 2 15 15 C 1.47058 * 119.99761 * 175.04749 * 13 12 2 16 16 C 1.35872 * 125.43036 * 4.98015 * 15 13 12 17 17 C 1.41589 * 107.72400 * 179.84406 * 16 15 13 18 18 C 1.40106 * 133.37791 * 180.13646 * 17 16 15 19 19 C 1.36437 * 119.83079 * 180.30783 * 18 17 16 20 20 C 1.38941 * 120.61573 * 359.97438 * 19 18 17 21 21 C 1.37672 * 120.65047 * 0.02562 * 20 19 18 22 22 C 1.39227 * 119.80945 * 0.02562 * 21 20 19 23 23 N 1.37475 * 133.18266 * 180.02562 * 22 21 20 24 24 C 1.46498 * 125.60743 * 359.94557 * 23 22 21 25 25 H 1.08998 * 109.47713 * 299.99723 * 1 2 3 26 26 H 1.09003 * 109.47186 * 60.00066 * 1 2 3 27 27 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00287 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99662 * 265.00151 * 12 2 1 30 30 H 1.07993 * 126.13771 * 0.02562 * 16 15 13 31 31 H 1.07995 * 120.08004 * 0.27791 * 18 17 16 32 32 H 1.07997 * 119.69501 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.67877 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.09825 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.47612 * 274.44804 * 24 23 22 36 36 H 1.09005 * 109.46765 * 34.45162 * 24 23 22 37 37 H 1.08995 * 109.47279 * 154.44368 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8742 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0184 -0.6905 -1.1963 13 6 2.1523 -0.0167 -2.3558 14 8 1.7834 1.1399 -2.4333 15 6 2.7443 -0.6798 -3.5273 16 6 3.1040 -1.9884 -3.5936 17 6 3.6271 -2.2266 -4.8876 18 6 4.1431 -3.3639 -5.5225 19 6 4.5886 -3.2794 -6.8094 20 6 4.5353 -2.0744 -7.4989 21 6 4.0327 -0.9429 -6.8969 22 6 3.5729 -1.0034 -5.5842 23 7 3.0297 -0.0699 -4.7336 24 6 2.7914 1.3396 -5.0541 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9032 -0.5281 4.4375 29 1 2.2491 -1.6317 -1.1527 30 1 3.0055 -2.7168 -2.8024 31 1 4.1886 -4.3048 -4.9945 32 1 4.9856 -4.1575 -7.2968 33 1 4.8917 -2.0248 -8.5173 34 1 3.9951 -0.0109 -7.4414 35 1 3.6991 1.9133 -4.8668 36 1 2.5135 1.4314 -6.1041 37 1 1.9842 1.7226 -4.4299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:22 Heat of formation + Delta-G solvation = 29.374580 kcal Electronic energy + Delta-G solvation = -20196.194345 eV Core-core repulsion = 17132.191400 eV Total energy + Delta-G solvation = -3064.002945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56102 -38.95204 -36.87240 -35.11986 -33.29113 -32.32473 -30.39600 -30.32628 -28.62173 -26.32110 -25.24957 -24.01559 -21.77479 -21.24764 -20.53339 -19.53854 -17.70832 -16.89018 -16.43133 -16.01134 -15.60776 -15.32367 -14.85813 -14.18141 -14.05591 -13.99095 -13.68795 -13.07656 -13.03879 -12.94083 -12.89478 -12.33868 -12.22972 -11.86565 -11.69934 -11.41172 -11.17154 -10.95857 -10.85238 -10.23050 -9.81276 -9.75993 -9.37319 -9.29611 -8.81099 -8.38021 -8.11508 -7.67310 -6.24343 -4.27701 0.82824 1.60210 2.24500 2.64697 3.20760 3.32901 3.36285 3.67006 3.86236 3.89663 4.28079 4.60557 4.81232 4.93866 4.95737 5.10114 5.13871 5.30001 5.37316 5.41191 5.59636 5.66920 5.77432 5.87943 5.98919 6.25852 6.32818 6.38794 6.49985 6.55493 6.65537 6.71038 6.79586 7.08134 7.12275 7.17832 7.25036 7.43147 8.05792 8.42271 8.66451 8.78205 9.35303 10.87682 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.004232 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.834408 B = 6613.985581 C = 7207.632923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.682 5.682 13 C 0.569 3.431 14 O -0.555 6.555 15 C 0.038 3.962 16 C -0.151 4.151 17 C -0.113 4.113 18 C -0.063 4.063 19 C -0.154 4.154 20 C -0.098 4.098 21 C -0.128 4.128 22 C 0.101 3.899 23 N -0.452 5.452 24 C 0.070 3.930 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.268 0.732 29 H 0.399 0.601 30 H 0.154 0.846 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 -2.177 -19.600 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.137 3.863 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.329 5.329 13 C 0.354 3.646 14 O -0.436 6.436 15 C -0.072 4.072 16 C -0.178 4.178 17 C -0.117 4.117 18 C -0.082 4.082 19 C -0.173 4.173 20 C -0.117 4.117 21 C -0.149 4.149 22 C -0.008 4.008 23 N -0.132 5.132 24 C -0.071 4.071 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.234 0.766 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.414 -0.962 -19.417 19.590 hybrid contribution -0.444 0.356 0.250 0.622 sum 1.970 -0.606 -19.167 19.278 Atomic orbital electron populations 1.22455 0.98998 1.01092 0.99469 1.19183 0.90385 0.94565 0.82212 0.93241 1.21013 1.33505 1.14625 0.88387 0.89985 1.24812 0.95440 0.96690 0.95468 1.69860 1.44722 1.40020 0.98070 0.86881 0.80587 0.83572 0.77484 1.20218 1.22090 1.18696 1.45980 1.63966 1.13950 1.09009 1.17187 0.79156 0.85904 0.82321 1.90705 1.51767 1.17275 1.83893 1.20201 1.06131 0.92864 0.88006 1.20993 1.04903 0.94629 0.97256 1.18183 1.05466 0.93425 0.94667 1.20398 0.96560 0.96710 0.94487 1.20579 1.03734 0.97877 0.95078 1.20796 0.99316 0.92157 0.99463 1.20012 1.03635 0.99384 0.91847 1.18392 1.00744 0.88870 0.92817 1.43872 1.50580 1.08945 1.09781 1.22231 1.04275 0.78168 1.02421 0.93305 0.94372 0.92628 0.92199 0.76594 0.82873 0.85830 0.86149 0.85907 0.86415 0.91250 0.90743 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.97 37.15 0.33 -3.24 16 2 C 0.24 5.63 2.12 -69.08 -0.15 5.48 16 3 H 0.05 1.27 6.70 -51.93 -0.35 0.92 16 4 C -0.54 -14.30 9.31 -34.44 -0.32 -14.62 16 5 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 8 Si 0.89 21.41 24.37 -169.99 -4.14 17.27 16 9 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.68 -13.59 5.05 -56.13 -0.28 -13.88 16 13 C 0.57 11.08 7.74 -12.69 -0.10 10.98 16 14 O -0.56 -12.08 14.15 5.23 0.07 -12.00 16 15 C 0.04 0.64 6.81 -82.29 -0.56 0.08 16 16 C -0.15 -2.24 10.29 -39.15 -0.40 -2.65 16 17 C -0.11 -1.59 6.16 -106.93 -0.66 -2.25 16 18 C -0.06 -0.73 10.06 -39.53 -0.40 -1.13 16 19 C -0.15 -1.56 9.97 -39.97 -0.40 -1.95 16 20 C -0.10 -0.98 10.01 -39.53 -0.40 -1.37 16 21 C -0.13 -1.47 10.00 -39.42 -0.39 -1.87 16 22 C 0.10 1.43 6.81 -83.97 -0.57 0.86 16 23 N -0.45 -6.88 3.22 -117.69 -0.38 -7.25 16 24 C 0.07 0.89 10.70 59.85 0.64 1.53 16 25 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 26 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 29 H 0.40 7.04 7.32 -40.82 -0.30 6.74 16 30 H 0.15 1.94 7.32 -52.49 -0.38 1.55 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.11 1.63 5.90 -51.93 -0.31 1.33 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -31.33 307.24 -7.29 -38.62 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.49 Total: 5.91 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.47 Total: -8.03 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.11 Total: -46.40 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.33 -7.29 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.990 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds