Wall clock time and date at job start Mon Mar 30 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46917 * 2 1 4 4 C 1.50698 * 109.47395 * 120.00015 * 2 1 3 5 5 H 1.08002 * 119.99592 * 120.00028 * 4 2 1 6 6 C 1.37874 * 120.00013 * 300.00374 * 4 2 1 7 7 N 1.31515 * 120.00093 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00067 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46973 * 90.00168 * 8 6 4 10 10 H 1.48498 * 109.47041 * 209.99580 * 8 6 4 11 11 H 1.48500 * 109.47220 * 330.00001 * 8 6 4 12 12 N 1.46505 * 109.47484 * 240.00617 * 2 1 3 13 13 C 1.34771 * 120.00009 * 85.26807 * 12 2 1 14 14 O 1.21650 * 120.00215 * 355.05068 * 13 12 2 15 15 C 1.47058 * 119.99761 * 175.04749 * 13 12 2 16 16 C 1.35872 * 125.43036 * 4.98015 * 15 13 12 17 17 C 1.41589 * 107.72400 * 179.84406 * 16 15 13 18 18 C 1.40106 * 133.37791 * 180.13646 * 17 16 15 19 19 C 1.36437 * 119.83079 * 180.30783 * 18 17 16 20 20 C 1.38941 * 120.61573 * 359.97438 * 19 18 17 21 21 C 1.37672 * 120.65047 * 0.02562 * 20 19 18 22 22 C 1.39227 * 119.80945 * 0.02562 * 21 20 19 23 23 N 1.37475 * 133.18266 * 180.02562 * 22 21 20 24 24 C 1.46498 * 125.60743 * 359.94557 * 23 22 21 25 25 H 1.08998 * 109.47713 * 299.99723 * 1 2 3 26 26 H 1.09003 * 109.47186 * 60.00066 * 1 2 3 27 27 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00287 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99662 * 265.00151 * 12 2 1 30 30 H 1.07993 * 126.13771 * 0.02562 * 16 15 13 31 31 H 1.07995 * 120.08004 * 0.27791 * 18 17 16 32 32 H 1.07997 * 119.69501 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.67877 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.09825 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.47612 * 274.44804 * 24 23 22 36 36 H 1.09005 * 109.46765 * 34.45162 * 24 23 22 37 37 H 1.08995 * 109.47279 * 154.44368 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8742 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0184 -0.6905 -1.1963 13 6 2.1523 -0.0167 -2.3558 14 8 1.7834 1.1399 -2.4333 15 6 2.7443 -0.6798 -3.5273 16 6 3.1040 -1.9884 -3.5936 17 6 3.6271 -2.2266 -4.8876 18 6 4.1431 -3.3639 -5.5225 19 6 4.5886 -3.2794 -6.8094 20 6 4.5353 -2.0744 -7.4989 21 6 4.0327 -0.9429 -6.8969 22 6 3.5729 -1.0034 -5.5842 23 7 3.0297 -0.0699 -4.7336 24 6 2.7914 1.3396 -5.0541 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9032 -0.5281 4.4375 29 1 2.2491 -1.6317 -1.1527 30 1 3.0055 -2.7168 -2.8024 31 1 4.1886 -4.3048 -4.9945 32 1 4.9856 -4.1575 -7.2968 33 1 4.8917 -2.0248 -8.5173 34 1 3.9951 -0.0109 -7.4414 35 1 3.6991 1.9133 -4.8668 36 1 2.5135 1.4314 -6.1041 37 1 1.9842 1.7226 -4.4299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:21 Heat of formation + Delta-G solvation = 9.368068 kcal Electronic energy + Delta-G solvation = -20197.061892 eV Core-core repulsion = 17132.191400 eV Total energy + Delta-G solvation = -3064.870493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.62705 -40.44509 -37.86466 -36.86129 -34.71106 -33.95625 -32.04501 -31.21867 -29.80509 -27.33215 -27.24172 -25.29956 -23.02492 -22.31500 -21.92513 -21.01681 -19.25463 -18.19514 -17.78917 -17.38398 -17.01890 -16.67676 -16.23504 -15.60114 -15.39946 -15.03453 -14.88870 -14.83670 -14.42604 -14.14606 -13.93321 -13.85340 -13.73895 -13.29732 -13.23000 -12.79344 -12.54747 -12.20056 -12.14451 -11.79550 -11.62897 -11.32168 -10.99133 -10.88074 -10.74992 -10.04772 -9.16761 -8.66774 -8.38699 -6.45555 -0.20861 0.70595 1.11590 1.28045 1.35848 1.44990 1.53562 2.25658 2.29409 2.44860 2.97234 2.98620 3.60957 3.70707 3.87252 4.14542 4.29273 4.34012 4.41527 4.45022 4.50708 4.52771 4.63458 4.65574 4.71361 4.84236 4.89346 4.96093 5.13994 5.27507 5.38070 5.52846 5.54456 5.67016 5.71611 5.76275 6.08848 6.11599 6.28978 6.54843 6.72005 7.11447 7.27030 8.76444 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.004232 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.834408 B = 6613.985581 C = 7207.632923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.246 3.754 3 H 0.027 0.973 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.938 3.062 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.261 1.261 12 N -0.683 5.683 13 C 0.572 3.428 14 O -0.584 6.584 15 C 0.001 3.999 16 C -0.139 4.139 17 C -0.141 4.141 18 C -0.071 4.071 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.142 4.142 22 C 0.089 3.911 23 N -0.460 5.460 24 C 0.069 3.931 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.271 0.729 29 H 0.409 0.591 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -2.790 -22.426 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.142 3.858 3 H 0.045 0.955 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.766 3.234 9 H -0.184 1.184 10 H -0.219 1.219 11 H -0.186 1.186 12 N -0.331 5.331 13 C 0.359 3.641 14 O -0.467 6.467 15 C -0.109 4.109 16 C -0.166 4.166 17 C -0.146 4.146 18 C -0.090 4.090 19 C -0.169 4.169 20 C -0.104 4.104 21 C -0.162 4.162 22 C -0.020 4.020 23 N -0.141 5.141 24 C -0.071 4.071 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.631 -1.593 -22.267 22.478 hybrid contribution -0.367 0.410 0.940 1.090 sum 2.264 -1.183 -21.327 21.479 Atomic orbital electron populations 1.22350 0.97495 1.01896 0.99642 1.18847 0.91458 0.93152 0.82375 0.95515 1.21213 1.32640 1.13802 0.89770 0.92341 1.25532 0.96757 0.99344 0.95230 1.69968 1.46502 1.41858 0.98688 0.86012 0.79834 0.80296 0.77304 1.18405 1.21904 1.18587 1.45756 1.64535 1.14370 1.08467 1.17494 0.78346 0.85488 0.82726 1.90679 1.52970 1.18529 1.84514 1.19801 1.09271 0.93705 0.88141 1.21259 1.03125 0.94065 0.98114 1.18460 1.06912 0.94679 0.94524 1.20713 0.96254 0.96641 0.95367 1.21029 1.02319 0.99170 0.94426 1.21304 0.96999 0.91323 1.00784 1.20374 1.03828 1.01102 0.90942 1.18831 1.00805 0.88603 0.93783 1.43992 1.50948 1.09693 1.09445 1.22274 1.03691 0.77423 1.03707 0.93755 0.93446 0.91529 0.91951 0.75455 0.81616 0.84104 0.83030 0.82424 0.84396 0.90768 0.87721 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.77 8.97 71.98 0.65 -6.12 16 2 C 0.25 11.70 2.12 44.24 0.09 11.79 16 3 H 0.03 1.41 6.70 -2.38 -0.02 1.39 16 4 C -0.54 -29.14 9.31 25.60 0.24 -28.90 16 5 H 0.06 3.38 7.98 -2.91 -0.02 3.35 16 6 C 0.03 1.76 5.45 84.65 0.46 2.23 16 7 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 8 Si 0.94 44.21 24.37 68.60 1.67 45.88 16 9 H -0.26 -11.41 6.87 99.48 0.68 -10.73 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.26 -12.18 6.53 99.48 0.65 -11.53 16 12 N -0.68 -27.78 5.05 -449.72 -2.27 -30.05 16 13 C 0.57 22.80 7.74 86.56 0.67 23.47 16 14 O -0.58 -26.11 14.15 -4.19 -0.06 -26.17 16 15 C 0.00 0.02 6.81 39.91 0.27 0.29 16 16 C -0.14 -4.07 10.29 22.55 0.23 -3.84 16 17 C -0.14 -3.81 6.16 -21.36 -0.13 -3.94 16 18 C -0.07 -1.47 10.06 22.30 0.22 -1.24 16 19 C -0.15 -2.44 9.97 22.02 0.22 -2.22 16 20 C -0.08 -1.33 10.01 22.30 0.22 -1.10 16 21 C -0.14 -2.84 10.00 22.37 0.22 -2.61 16 22 C 0.09 2.39 6.81 39.14 0.27 2.66 16 23 N -0.46 -13.87 3.22 -526.27 -1.70 -15.57 16 24 C 0.07 1.76 10.70 127.77 1.37 3.12 16 25 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 26 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 27 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.41 14.74 7.32 -92.71 -0.68 14.06 16 30 H 0.17 4.15 7.32 -2.91 -0.02 4.13 16 31 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.09 2.66 5.90 -2.39 -0.01 2.64 16 Total: -1.00 -68.60 307.24 3.29 -65.31 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.34 Total: 22.19 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.01 Total: -6.41 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -3.67 Total: -100.80 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.17 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.88 kcal Total: -68.60 3.29 -65.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.679 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds