Wall clock time and date at job start Mon Mar 30 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46908 * 2 1 4 4 C 1.50697 * 109.46785 * 239.99879 * 2 1 3 5 5 H 1.08007 * 119.99577 * 240.00140 * 4 2 1 6 6 C 1.37866 * 120.00198 * 60.00602 * 4 2 1 7 7 N 1.31515 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00140 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47126 * 89.99648 * 8 6 4 10 10 H 1.48496 * 109.47179 * 209.99447 * 8 6 4 11 11 H 1.48499 * 109.47155 * 329.99839 * 8 6 4 12 12 N 1.46505 * 109.46749 * 119.99791 * 2 1 3 13 13 C 1.34772 * 120.00084 * 274.99852 * 12 2 1 14 14 O 1.21639 * 120.00286 * 354.86270 * 13 12 2 15 15 C 1.47060 * 119.99928 * 174.86452 * 13 12 2 16 16 C 1.35867 * 125.42845 * 2.81808 * 15 13 12 17 17 C 1.41595 * 107.72359 * 179.84501 * 16 15 13 18 18 C 1.40102 * 133.37496 * 180.13375 * 17 16 15 19 19 C 1.36442 * 119.82763 * 180.30457 * 18 17 16 20 20 C 1.38942 * 120.61432 * 0.02562 * 19 18 17 21 21 C 1.37672 * 120.64955 * 0.02562 * 20 19 18 22 22 C 1.39231 * 119.80945 * 359.97438 * 21 20 19 23 23 N 1.37479 * 133.18030 * 180.02562 * 22 21 20 24 24 C 1.46500 * 125.60467 * 359.95836 * 23 22 21 25 25 H 1.09005 * 109.47014 * 299.99971 * 1 2 3 26 26 H 1.08999 * 109.46897 * 59.99721 * 1 2 3 27 27 H 1.08998 * 109.47412 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00196 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99645 * 95.00320 * 12 2 1 30 30 H 1.08001 * 126.14202 * 0.02562 * 16 15 13 31 31 H 1.08000 * 120.08579 * 0.28079 * 18 17 16 32 32 H 1.07997 * 119.69421 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.67453 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.09388 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46714 * 265.13684 * 24 23 22 36 36 H 1.08996 * 109.47027 * 25.12884 * 24 23 22 37 37 H 1.09000 * 109.47155 * 145.13447 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.9478 1.1813 2.3907 15 6 2.5284 -0.7348 3.5835 16 6 2.8287 -2.0575 3.6617 17 6 3.1446 -2.3487 5.0109 18 6 3.5253 -3.5200 5.6787 19 6 3.7631 -3.4887 7.0219 20 6 3.6309 -2.3045 7.7364 21 6 3.2570 -1.1406 7.1031 22 6 3.0088 -1.1471 5.7331 23 7 2.6302 -0.1721 4.8410 24 6 2.3777 1.2331 5.1696 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7083 1.1609 -3.4843 29 1 2.2490 -1.6318 1.1527 30 1 2.8295 -2.7601 2.8415 31 1 3.6299 -4.4454 5.1318 32 1 4.0569 -4.3928 7.5344 33 1 3.8232 -2.2969 8.7991 34 1 3.1573 -0.2251 7.6672 35 1 1.3121 1.3791 5.3463 36 1 2.9349 1.5021 6.0669 37 1 2.6982 1.8635 4.3401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:24 Heat of formation + Delta-G solvation = 20.526600 kcal Electronic energy + Delta-G solvation = -20130.712888 eV Core-core repulsion = 17066.326265 eV Total energy + Delta-G solvation = -3064.386622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50090 -38.75674 -36.80101 -34.90180 -33.25895 -32.27640 -30.28513 -29.79018 -28.21584 -26.26034 -25.30952 -23.88758 -21.70048 -21.19457 -20.45444 -19.33181 -17.64709 -16.83765 -16.22128 -15.79550 -15.50470 -15.18710 -14.67849 -14.16084 -14.01307 -13.90673 -13.53669 -13.04257 -12.92722 -12.84816 -12.48667 -12.21766 -11.79106 -11.67520 -11.21146 -11.14057 -10.96877 -10.92736 -10.78475 -10.37091 -10.27079 -9.74276 -9.30897 -9.09823 -8.60846 -8.22219 -7.96255 -7.62096 -6.16072 -4.25502 0.88459 1.63813 2.32281 2.71983 3.23380 3.30378 3.32818 3.80260 3.94418 4.00860 4.34706 4.64263 4.83500 4.97629 5.03367 5.16640 5.22801 5.38476 5.40480 5.45377 5.66332 5.71716 5.82451 5.92435 6.02591 6.42157 6.58427 6.69899 6.74981 6.77962 6.89626 7.07264 7.13284 7.28975 7.33155 7.50106 7.64691 7.84965 8.08572 8.53871 8.70454 8.96113 9.41771 10.90085 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004091 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.255663 B = 6843.089378 C = 7516.445171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.689 5.689 13 C 0.565 3.435 14 O -0.554 6.554 15 C 0.043 3.957 16 C -0.157 4.157 17 C -0.112 4.112 18 C -0.064 4.064 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.128 4.128 22 C 0.100 3.900 23 N -0.452 5.452 24 C 0.077 3.923 25 H 0.013 0.987 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.265 0.735 29 H 0.393 0.607 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -6.129 17.030 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.336 5.336 13 C 0.350 3.650 14 O -0.434 6.434 15 C -0.068 4.068 16 C -0.183 4.183 17 C -0.117 4.117 18 C -0.083 4.083 19 C -0.173 4.173 20 C -0.119 4.119 21 C -0.148 4.148 22 C -0.010 4.010 23 N -0.132 5.132 24 C -0.064 4.064 25 H 0.032 0.968 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.226 0.774 30 H 0.170 0.830 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.601 -4.742 16.882 17.901 hybrid contribution 0.337 -0.828 -0.806 1.204 sum 3.938 -5.570 16.076 17.463 Atomic orbital electron populations 1.22101 0.98175 0.99380 1.00964 1.18851 0.91095 0.94198 0.79499 0.92958 1.21192 1.32631 1.13340 0.90152 0.91883 1.24878 0.94756 0.94918 0.99085 1.69896 1.35810 1.22405 1.23988 0.86418 0.79227 0.79257 0.82047 1.20489 1.21056 1.19771 1.46333 1.63790 1.13849 1.09652 1.17190 0.78621 0.86619 0.82602 1.90732 1.52684 1.14087 1.85938 1.20380 1.07075 0.93050 0.86309 1.20960 1.07009 0.94064 0.96284 1.18183 1.06516 0.93350 0.93606 1.20382 0.97469 0.96305 0.94142 1.20568 1.04457 0.98050 0.94218 1.20781 0.99709 0.92036 0.99376 1.20012 1.05136 0.99100 0.90558 1.18392 1.02505 0.88337 0.91746 1.43898 1.55532 1.08499 1.05266 1.22125 1.02292 0.78827 1.03143 0.96750 0.88892 0.95215 0.92507 0.77372 0.83027 0.85929 0.86217 0.85950 0.86428 0.91107 0.90615 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.66 2.60 -69.08 -0.18 6.48 16 3 H 0.05 1.51 7.51 -51.93 -0.39 1.12 16 4 C -0.53 -13.99 8.73 -34.45 -0.30 -14.29 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.69 -14.48 5.05 -56.13 -0.28 -14.76 16 13 C 0.57 11.69 7.75 -12.69 -0.10 11.59 16 14 O -0.55 -12.96 14.28 5.24 0.07 -12.88 16 15 C 0.04 0.75 6.81 -82.29 -0.56 0.19 16 16 C -0.16 -2.40 10.29 -39.15 -0.40 -2.81 16 17 C -0.11 -1.62 6.16 -106.93 -0.66 -2.28 16 18 C -0.06 -0.77 10.06 -39.53 -0.40 -1.16 16 19 C -0.15 -1.60 9.97 -39.97 -0.40 -2.00 16 20 C -0.10 -1.02 10.01 -39.53 -0.40 -1.42 16 21 C -0.13 -1.51 9.91 -39.42 -0.39 -1.90 16 22 C 0.10 1.46 6.81 -83.98 -0.57 0.88 16 23 N -0.45 -7.16 3.22 -117.70 -0.38 -7.54 16 24 C 0.08 1.04 10.42 59.85 0.62 1.66 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 7.17 7.32 -40.82 -0.30 6.88 16 30 H 0.15 1.98 7.32 -52.49 -0.38 1.59 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.14 7.93 -52.48 -0.42 0.72 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 37 H 0.10 1.59 6.46 -51.93 -0.34 1.25 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -30.54 313.94 -8.36 -38.90 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.63 Total: 6.76 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.48 Total: -6.65 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.04 Total: -46.24 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.54 -8.36 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.422 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds