Wall clock time and date at job start Mon Mar 30 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46908 * 2 1 4 4 C 1.50697 * 109.46785 * 239.99879 * 2 1 3 5 5 H 1.08007 * 119.99577 * 240.00140 * 4 2 1 6 6 C 1.37866 * 120.00198 * 60.00602 * 4 2 1 7 7 N 1.31515 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00140 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47126 * 89.99648 * 8 6 4 10 10 H 1.48496 * 109.47179 * 209.99447 * 8 6 4 11 11 H 1.48499 * 109.47155 * 329.99839 * 8 6 4 12 12 N 1.46505 * 109.46749 * 119.99791 * 2 1 3 13 13 C 1.34772 * 120.00084 * 274.99852 * 12 2 1 14 14 O 1.21639 * 120.00286 * 354.86270 * 13 12 2 15 15 C 1.47060 * 119.99928 * 174.86452 * 13 12 2 16 16 C 1.35867 * 125.42845 * 2.81808 * 15 13 12 17 17 C 1.41595 * 107.72359 * 179.84501 * 16 15 13 18 18 C 1.40102 * 133.37496 * 180.13375 * 17 16 15 19 19 C 1.36442 * 119.82763 * 180.30457 * 18 17 16 20 20 C 1.38942 * 120.61432 * 0.02562 * 19 18 17 21 21 C 1.37672 * 120.64955 * 0.02562 * 20 19 18 22 22 C 1.39231 * 119.80945 * 359.97438 * 21 20 19 23 23 N 1.37479 * 133.18030 * 180.02562 * 22 21 20 24 24 C 1.46500 * 125.60467 * 359.95836 * 23 22 21 25 25 H 1.09005 * 109.47014 * 299.99971 * 1 2 3 26 26 H 1.08999 * 109.46897 * 59.99721 * 1 2 3 27 27 H 1.08998 * 109.47412 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00196 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99645 * 95.00320 * 12 2 1 30 30 H 1.08001 * 126.14202 * 0.02562 * 16 15 13 31 31 H 1.08000 * 120.08579 * 0.28079 * 18 17 16 32 32 H 1.07997 * 119.69421 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.67453 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.09388 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46714 * 265.13684 * 24 23 22 36 36 H 1.08996 * 109.47027 * 25.12884 * 24 23 22 37 37 H 1.09000 * 109.47155 * 145.13447 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.9478 1.1813 2.3907 15 6 2.5284 -0.7348 3.5835 16 6 2.8287 -2.0575 3.6617 17 6 3.1446 -2.3487 5.0109 18 6 3.5253 -3.5200 5.6787 19 6 3.7631 -3.4887 7.0219 20 6 3.6309 -2.3045 7.7364 21 6 3.2570 -1.1406 7.1031 22 6 3.0088 -1.1471 5.7331 23 7 2.6302 -0.1721 4.8410 24 6 2.3777 1.2331 5.1696 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7083 1.1609 -3.4843 29 1 2.2490 -1.6318 1.1527 30 1 2.8295 -2.7601 2.8415 31 1 3.6299 -4.4454 5.1318 32 1 4.0569 -4.3928 7.5344 33 1 3.8232 -2.2969 8.7991 34 1 3.1573 -0.2251 7.6672 35 1 1.3121 1.3791 5.3463 36 1 2.9349 1.5021 6.0669 37 1 2.6982 1.8635 4.3401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:24 Heat of formation + Delta-G solvation = 2.368666 kcal Electronic energy + Delta-G solvation = -20131.500275 eV Core-core repulsion = 17066.326265 eV Total energy + Delta-G solvation = -3065.174009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.61011 -40.34180 -37.83105 -36.75227 -34.70360 -33.85154 -31.41490 -31.20721 -29.60130 -27.37617 -27.31888 -25.21916 -22.98923 -22.31158 -21.90405 -20.91658 -19.16978 -18.00438 -17.59295 -17.35508 -16.87528 -16.68810 -16.14263 -15.60217 -15.29620 -14.96983 -14.83246 -14.57716 -14.29061 -13.92941 -13.87927 -13.74328 -13.30230 -13.01645 -12.91400 -12.74114 -12.54686 -12.31283 -12.17670 -12.14706 -11.78163 -11.13265 -10.99474 -10.74720 -10.61827 -9.90636 -9.15165 -8.66074 -8.19003 -6.36540 -0.18597 0.71501 1.14654 1.45732 1.46639 1.55582 1.59620 2.34084 2.36555 2.59406 2.99421 3.12006 3.65868 3.73868 3.85969 4.15178 4.30375 4.33962 4.43853 4.51559 4.63253 4.68709 4.72225 4.85032 4.87597 4.90562 5.04203 5.14662 5.37135 5.53192 5.55344 5.60587 5.70203 5.72177 5.76725 5.88260 6.05304 6.09879 6.29868 6.68767 6.82013 7.24695 7.40303 8.87626 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004091 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.255663 B = 6843.089378 C = 7516.445171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.687 5.687 13 C 0.565 3.435 14 O -0.592 6.592 15 C 0.001 3.999 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.070 4.070 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.143 4.143 22 C 0.088 3.912 23 N -0.461 5.461 24 C 0.077 3.923 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -8.925 19.068 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.335 5.335 13 C 0.353 3.647 14 O -0.475 6.475 15 C -0.109 4.109 16 C -0.165 4.165 17 C -0.145 4.145 18 C -0.088 4.088 19 C -0.169 4.169 20 C -0.104 4.104 21 C -0.163 4.163 22 C -0.022 4.022 23 N -0.142 5.142 24 C -0.063 4.063 25 H 0.030 0.970 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.186 0.814 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.825 -7.570 18.944 20.963 hybrid contribution 0.014 -0.025 -1.227 1.227 sum 4.838 -7.595 17.717 19.874 Atomic orbital electron populations 1.21920 0.97933 0.99716 0.99702 1.18455 0.91250 0.92181 0.81198 0.97764 1.21513 1.32831 1.13699 0.90608 0.90720 1.25787 0.94797 0.95535 1.02285 1.70043 1.36892 1.23854 1.24723 0.85311 0.79008 0.78030 0.77798 1.19517 1.21216 1.18832 1.46018 1.64218 1.14356 1.08902 1.17613 0.77446 0.86255 0.83425 1.90701 1.54299 1.15864 1.86643 1.19886 1.11280 0.93847 0.85911 1.21252 1.04458 0.93234 0.97532 1.18458 1.08164 0.94638 0.93225 1.20713 0.96910 0.96120 0.95091 1.21035 1.02785 0.99424 0.93694 1.21301 0.96850 0.91160 1.01090 1.20376 1.05577 1.00883 0.89495 1.18857 1.02441 0.88025 0.92831 1.44000 1.56014 1.09250 1.04951 1.22144 1.02826 0.77945 1.03407 0.97013 0.91054 0.93880 0.92452 0.75719 0.81385 0.83918 0.82942 0.82421 0.84466 0.91058 0.87246 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.27 2.60 44.24 0.12 14.39 16 3 H 0.00 0.27 7.51 -2.39 -0.02 0.26 16 4 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.02 0.87 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.37 11.32 21.44 0.24 -52.13 16 8 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 12 N -0.69 -29.86 5.05 -449.73 -2.27 -32.13 16 13 C 0.57 24.55 7.75 86.56 0.67 25.22 16 14 O -0.59 -29.63 14.28 -4.16 -0.06 -29.69 16 15 C 0.00 0.02 6.81 39.91 0.27 0.29 16 16 C -0.14 -4.15 10.29 22.55 0.23 -3.91 16 17 C -0.14 -3.85 6.16 -21.36 -0.13 -3.98 16 18 C -0.07 -1.43 10.06 22.30 0.22 -1.21 16 19 C -0.15 -2.44 9.97 22.02 0.22 -2.22 16 20 C -0.08 -1.35 10.01 22.30 0.22 -1.13 16 21 C -0.14 -2.95 9.91 22.37 0.22 -2.73 16 22 C 0.09 2.44 6.81 39.14 0.27 2.70 16 23 N -0.46 -14.73 3.22 -526.29 -1.70 -16.43 16 24 C 0.08 2.14 10.42 127.77 1.33 3.47 16 25 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.41 15.02 7.32 -92.71 -0.68 14.34 16 30 H 0.17 4.21 7.32 -2.91 -0.02 4.18 16 31 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.14 2.20 7.93 -2.91 -0.02 2.18 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.11 2.15 7.89 -2.39 -0.02 2.13 16 37 H 0.08 2.53 6.46 -2.39 -0.02 2.51 16 Total: -1.00 -68.83 313.94 3.64 -65.19 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.41 Total: 24.14 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.98 Total: -2.81 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -3.72 Total: -100.69 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.06 Total: -29.69 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -68.83 3.64 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.561 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds