Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.38144 * 125.60596 * 2 1 4 4 C 1.47060 * 125.43065 * 359.73272 * 3 2 1 5 5 O 1.21650 * 119.99990 * 5.00523 * 4 3 2 6 6 N 1.34769 * 120.00378 * 184.99609 * 4 3 2 7 7 C 1.46506 * 120.00462 * 185.10517 * 6 4 3 8 8 C 1.53003 * 109.47104 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.46756 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99634 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99749 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00321 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99916 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47057 * 59.99931 * 13 11 9 15 15 H 1.48498 * 109.47023 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46933 * 300.00147 * 13 11 9 17 17 C 1.35871 * 109.14069 * 179.73514 * 3 2 1 18 18 C 1.41583 * 107.72554 * 359.97438 * 17 3 2 19 19 C 1.40102 * 133.38234 * 179.97438 * 18 17 3 20 20 C 1.36435 * 119.83118 * 179.97438 * 19 18 17 21 21 C 1.38939 * 120.62022 * 359.97438 * 20 19 18 22 22 C 1.37670 * 120.64325 * 0.02562 * 21 20 19 23 23 C 1.37477 * 125.60720 * 179.69070 * 2 1 3 24 24 H 1.09005 * 109.47142 * 84.44661 * 1 2 3 25 25 H 1.09005 * 109.47540 * 204.44012 * 1 2 3 26 26 H 1.09001 * 109.47378 * 324.44120 * 1 2 3 27 27 H 0.97003 * 119.99961 * 5.11334 * 6 4 3 28 28 H 1.08995 * 109.46636 * 300.00587 * 7 6 4 29 29 H 1.09002 * 109.46504 * 60.00935 * 7 6 4 30 30 H 1.09001 * 109.47191 * 300.00242 * 8 7 6 31 31 H 1.08993 * 109.47165 * 60.00587 * 8 7 6 32 32 H 0.97003 * 120.00340 * 179.97438 * 12 11 9 33 33 H 1.07999 * 126.13520 * 179.97438 * 17 3 2 34 34 H 1.08003 * 120.08228 * 359.97204 * 19 18 17 35 35 H 1.08001 * 119.68975 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.68069 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.09388 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1232 0.0000 4 6 1.7913 2.5139 -0.0056 5 8 0.6008 2.7484 0.0812 6 7 2.6723 3.5288 -0.1066 7 6 2.2089 4.9146 0.0001 8 6 3.3998 5.8635 -0.1490 9 6 2.9231 7.2889 -0.0386 10 1 1.8757 7.4970 0.1223 11 6 3.8244 8.3271 -0.1418 12 7 5.1000 8.0736 -0.3372 13 14 3.2337 10.0939 -0.0043 14 1 2.5978 10.3014 1.3215 15 1 4.3895 11.0150 -0.1491 16 1 2.2441 10.3699 -1.0765 17 6 3.5722 0.7381 0.0059 18 6 3.6033 -0.6774 0.0105 19 6 4.6425 -1.6171 0.0167 20 6 4.3520 -2.9502 0.0205 21 6 3.0331 -3.3871 0.0187 22 6 1.9946 -2.4834 0.0126 23 6 2.2654 -1.1177 0.0060 24 1 -0.3634 0.0995 -1.0229 25 1 -0.3634 -0.9356 0.4252 26 1 -0.3634 0.8360 0.5976 27 1 3.6132 3.3418 -0.2502 28 1 1.4829 5.1165 -0.7875 29 1 1.7417 5.0674 0.9730 30 1 4.1261 5.6616 0.6383 31 1 3.8667 5.7105 -1.1219 32 1 5.7341 8.8040 -0.4103 33 1 4.4302 1.3940 0.0070 34 1 5.6708 -1.2870 0.0185 35 1 5.1549 -3.6726 0.0249 36 1 2.8206 -4.4460 0.0214 37 1 0.9726 -2.8329 0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = 14.228227 kcal Electronic energy + Delta-G solvation = -19563.168706 eV Core-core repulsion = 16498.508966 eV Total energy + Delta-G solvation = -3064.659740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67773 -39.07681 -36.94710 -35.03231 -33.39541 -32.71652 -30.41798 -30.22848 -28.75527 -26.46314 -25.15465 -23.50673 -21.72088 -21.20691 -20.94029 -19.75007 -17.48595 -16.82776 -16.60671 -16.14343 -15.75327 -15.16485 -14.67185 -14.61544 -14.37505 -14.13094 -13.86836 -13.19637 -13.13015 -13.08638 -12.97490 -12.41683 -12.31696 -11.80688 -11.33642 -11.26003 -11.04633 -11.03666 -10.68972 -10.38343 -9.96803 -9.87077 -9.58162 -9.29845 -8.68376 -8.43461 -8.24029 -7.77736 -6.11486 -4.14830 0.71666 1.51550 2.10912 2.51448 3.29854 3.33953 3.36556 3.48109 3.62955 3.79794 4.39557 4.51018 4.67838 4.77989 4.87092 5.03792 5.21950 5.25574 5.28195 5.30223 5.48523 5.56770 5.64002 5.77175 5.89900 6.22746 6.27301 6.30464 6.47687 6.56158 6.60840 6.66143 6.78135 6.97815 7.13378 7.47405 7.57320 7.84725 7.87304 8.22816 8.44903 8.90593 9.50145 11.00027 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.003256 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.998129 B = 8596.522082 C = 9336.907271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.452 5.452 3 C 0.033 3.967 4 C 0.572 3.428 5 O -0.550 6.550 6 N -0.704 5.704 7 C 0.123 3.877 8 C 0.012 3.988 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.062 4.062 20 C -0.153 4.153 21 C -0.095 4.095 22 C -0.129 4.129 23 C 0.103 3.897 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.402 0.598 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 -21.856 0.469 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.132 5.132 3 C -0.077 4.077 4 C 0.357 3.643 5 O -0.430 6.430 6 N -0.353 5.353 7 C 0.001 3.999 8 C -0.025 4.025 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.175 4.175 18 C -0.119 4.119 19 C -0.081 4.081 20 C -0.172 4.172 21 C -0.115 4.115 22 C -0.150 4.150 23 C -0.006 4.006 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.236 0.764 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.868 -21.485 0.521 21.836 hybrid contribution 0.166 0.881 -0.024 0.897 sum -3.702 -20.603 0.497 20.939 Atomic orbital electron populations 1.22129 0.75947 1.04437 1.03916 1.43863 1.06275 1.03229 1.59857 1.20094 0.90151 0.87959 1.09497 1.17180 0.86170 0.83262 0.77671 1.90754 1.15709 1.85147 1.51376 1.46086 1.11000 1.07080 1.71153 1.21831 0.99880 0.77196 1.00966 1.19336 0.92043 0.93160 0.97973 1.20989 0.94443 0.90380 1.50437 0.92265 1.24988 0.94832 0.99469 0.94915 1.69940 1.01722 1.32400 1.49124 0.86564 0.78188 0.83948 0.78794 1.20101 1.21212 1.20108 1.21006 0.95127 0.93950 1.07374 1.18177 0.92432 0.93447 1.07835 1.20412 0.97905 0.92096 0.97646 1.20599 0.96461 0.95498 1.04629 1.20817 0.92235 0.98786 0.99651 1.20021 0.99597 0.89020 1.06325 1.18389 0.89999 0.88332 1.03900 0.91043 0.90415 0.87989 0.76365 0.92132 0.92231 0.95757 0.95761 0.92723 0.82829 0.85744 0.86054 0.85809 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.42 59.84 0.62 1.51 16 2 N -0.45 -6.33 3.22 -117.70 -0.38 -6.71 16 3 C 0.03 0.51 6.81 -82.29 -0.56 -0.05 16 4 C 0.57 10.05 7.78 -12.69 -0.10 9.95 16 5 O -0.55 -10.98 14.67 5.23 0.08 -10.90 16 6 N -0.70 -12.32 5.52 -61.50 -0.34 -12.66 16 7 C 0.12 2.56 5.62 -4.04 -0.02 2.53 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 13 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.15 -2.01 10.28 -39.16 -0.40 -2.41 16 18 C -0.11 -1.50 6.16 -106.93 -0.66 -2.16 16 19 C -0.06 -0.67 10.06 -39.53 -0.40 -1.07 16 20 C -0.15 -1.43 9.96 -39.97 -0.40 -1.83 16 21 C -0.10 -0.87 10.01 -39.53 -0.40 -1.27 16 22 C -0.13 -1.36 9.89 -39.42 -0.39 -1.75 16 23 C 0.10 1.36 6.81 -83.98 -0.57 0.78 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 26 H 0.10 1.34 6.48 -51.93 -0.34 1.00 16 27 H 0.40 6.13 7.30 -40.82 -0.30 5.83 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.15 1.74 7.36 -52.49 -0.39 1.35 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 1.00 7.90 -52.48 -0.41 0.58 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -31.68 318.85 -8.71 -40.39 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.77 Total: 2.69 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -3.83 Total: -8.67 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.02 Total: -44.47 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.68 -8.71 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.620 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds