Wall clock time and date at job start Mon Mar 30 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.38144 * 125.60596 * 2 1 4 4 C 1.47060 * 125.43065 * 359.73272 * 3 2 1 5 5 O 1.21650 * 119.99990 * 5.00523 * 4 3 2 6 6 N 1.34769 * 120.00378 * 184.99609 * 4 3 2 7 7 C 1.46506 * 120.00462 * 185.10517 * 6 4 3 8 8 C 1.53003 * 109.47104 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.46756 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99634 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99749 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00321 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99916 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47057 * 59.99931 * 13 11 9 15 15 H 1.48498 * 109.47023 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46933 * 300.00147 * 13 11 9 17 17 C 1.35871 * 109.14069 * 179.73514 * 3 2 1 18 18 C 1.41583 * 107.72554 * 359.97438 * 17 3 2 19 19 C 1.40102 * 133.38234 * 179.97438 * 18 17 3 20 20 C 1.36435 * 119.83118 * 179.97438 * 19 18 17 21 21 C 1.38939 * 120.62022 * 359.97438 * 20 19 18 22 22 C 1.37670 * 120.64325 * 0.02562 * 21 20 19 23 23 C 1.37477 * 125.60720 * 179.69070 * 2 1 3 24 24 H 1.09005 * 109.47142 * 84.44661 * 1 2 3 25 25 H 1.09005 * 109.47540 * 204.44012 * 1 2 3 26 26 H 1.09001 * 109.47378 * 324.44120 * 1 2 3 27 27 H 0.97003 * 119.99961 * 5.11334 * 6 4 3 28 28 H 1.08995 * 109.46636 * 300.00587 * 7 6 4 29 29 H 1.09002 * 109.46504 * 60.00935 * 7 6 4 30 30 H 1.09001 * 109.47191 * 300.00242 * 8 7 6 31 31 H 1.08993 * 109.47165 * 60.00587 * 8 7 6 32 32 H 0.97003 * 120.00340 * 179.97438 * 12 11 9 33 33 H 1.07999 * 126.13520 * 179.97438 * 17 3 2 34 34 H 1.08003 * 120.08228 * 359.97204 * 19 18 17 35 35 H 1.08001 * 119.68975 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.68069 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.09388 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1232 0.0000 4 6 1.7913 2.5139 -0.0056 5 8 0.6008 2.7484 0.0812 6 7 2.6723 3.5288 -0.1066 7 6 2.2089 4.9146 0.0001 8 6 3.3998 5.8635 -0.1490 9 6 2.9231 7.2889 -0.0386 10 1 1.8757 7.4970 0.1223 11 6 3.8244 8.3271 -0.1418 12 7 5.1000 8.0736 -0.3372 13 14 3.2337 10.0939 -0.0043 14 1 2.5978 10.3014 1.3215 15 1 4.3895 11.0150 -0.1491 16 1 2.2441 10.3699 -1.0765 17 6 3.5722 0.7381 0.0059 18 6 3.6033 -0.6774 0.0105 19 6 4.6425 -1.6171 0.0167 20 6 4.3520 -2.9502 0.0205 21 6 3.0331 -3.3871 0.0187 22 6 1.9946 -2.4834 0.0126 23 6 2.2654 -1.1177 0.0060 24 1 -0.3634 0.0995 -1.0229 25 1 -0.3634 -0.9356 0.4252 26 1 -0.3634 0.8360 0.5976 27 1 3.6132 3.3418 -0.2502 28 1 1.4829 5.1165 -0.7875 29 1 1.7417 5.0674 0.9730 30 1 4.1261 5.6616 0.6383 31 1 3.8667 5.7105 -1.1219 32 1 5.7341 8.8040 -0.4103 33 1 4.4302 1.3940 0.0070 34 1 5.6708 -1.2870 0.0185 35 1 5.1549 -3.6726 0.0249 36 1 2.8206 -4.4460 0.0214 37 1 0.9726 -2.8329 0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259740161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:29 Heat of formation + Delta-G solvation = -4.602835 kcal Electronic energy + Delta-G solvation = -19563.985283 eV Core-core repulsion = 16498.508966 eV Total energy + Delta-G solvation = -3065.476316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.65518 -40.43537 -37.83797 -36.67749 -35.00026 -34.05696 -31.85965 -31.23425 -29.97949 -27.43507 -26.84749 -24.81959 -22.99018 -22.38280 -22.18222 -20.98284 -18.70433 -18.46838 -17.75570 -17.36619 -16.93143 -16.49470 -16.39364 -16.04807 -15.56276 -15.02977 -14.86296 -14.75160 -14.41330 -14.29170 -13.96731 -13.87418 -13.35284 -13.19562 -12.94104 -12.58461 -12.54188 -12.28704 -12.18457 -11.81138 -11.69748 -11.49764 -11.08897 -10.77432 -10.60500 -10.16298 -9.19251 -8.68547 -8.23855 -6.34522 -0.24326 0.68959 1.07465 1.41754 1.44487 1.47908 1.53148 2.22320 2.29755 2.45718 2.97089 3.11068 3.53897 3.68090 3.83981 4.13127 4.28092 4.33307 4.42297 4.43783 4.46359 4.49320 4.62365 4.66947 4.82158 4.83138 4.87275 5.12762 5.18983 5.44414 5.53168 5.56915 5.63874 5.70575 5.73628 5.78020 6.07096 6.14477 6.26419 6.47176 6.78239 7.05050 7.34759 8.87841 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.003256 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.998129 B = 8596.522082 C = 9336.907271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.460 5.460 3 C -0.002 4.002 4 C 0.575 3.425 5 O -0.580 6.580 6 N -0.701 5.701 7 C 0.143 3.857 8 C 0.022 3.978 9 C -0.548 4.548 10 H 0.060 0.940 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.269 1.269 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.071 4.071 20 C -0.151 4.151 21 C -0.084 4.084 22 C -0.142 4.142 23 C 0.091 3.909 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.412 0.588 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.266 0.734 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -23.865 0.572 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.141 5.141 3 C -0.112 4.112 4 C 0.362 3.638 5 O -0.462 6.462 6 N -0.351 5.351 7 C 0.020 3.980 8 C -0.015 4.015 9 C -0.587 4.587 10 H 0.079 0.921 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.789 3.211 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.163 4.163 18 C -0.147 4.147 19 C -0.089 4.089 20 C -0.170 4.170 21 C -0.103 4.103 22 C -0.163 4.163 23 C -0.019 4.019 24 H 0.091 0.909 25 H 0.126 0.874 26 H 0.099 0.901 27 H 0.249 0.751 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.186 0.814 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.612 -23.515 0.622 23.799 hybrid contribution 0.160 1.301 -0.058 1.312 sum -3.452 -22.215 0.564 22.488 Atomic orbital electron populations 1.22185 0.75197 1.05171 1.03891 1.43995 1.06880 1.03112 1.60148 1.19749 0.91143 0.87052 1.13206 1.17461 0.85579 0.84200 0.76513 1.90728 1.16916 1.85792 1.52750 1.45839 1.11707 1.05932 1.71600 1.21334 0.98022 0.78403 1.00222 1.19141 0.92756 0.93095 0.96518 1.21429 0.94733 0.92026 1.50480 0.92145 1.25860 0.94927 1.03895 0.94418 1.70048 1.02812 1.33786 1.49881 0.85505 0.77877 0.78609 0.79106 1.19313 1.20623 1.19372 1.21281 0.94864 0.94893 1.05282 1.18467 0.93457 0.93437 1.09386 1.20717 0.98244 0.92515 0.97470 1.21035 0.97610 0.95428 1.02898 1.21308 0.91752 1.00296 0.96974 1.20381 1.01330 0.88004 1.06556 1.18822 0.89979 0.89105 1.03961 0.90870 0.87356 0.90094 0.75109 0.93010 0.92884 0.97052 0.97199 0.92504 0.81444 0.84101 0.83096 0.82449 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.76 10.42 127.77 1.33 3.09 16 2 N -0.46 -12.87 3.22 -526.28 -1.70 -14.56 16 3 C 0.00 -0.06 6.81 39.91 0.27 0.22 16 4 C 0.57 20.90 7.78 86.56 0.67 21.57 16 5 O -0.58 -24.07 14.67 -4.19 -0.06 -24.14 16 6 N -0.70 -25.30 5.52 -466.72 -2.58 -27.88 16 7 C 0.14 6.14 5.62 86.38 0.49 6.63 16 8 C 0.02 1.12 5.09 29.85 0.15 1.27 16 9 C -0.55 -30.44 9.11 25.60 0.23 -30.21 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 11 C 0.01 0.44 5.46 84.65 0.46 0.91 16 12 N -0.93 -54.11 13.29 21.44 0.28 -53.83 16 13 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 C -0.14 -3.68 10.28 22.55 0.23 -3.44 16 18 C -0.14 -3.60 6.16 -21.36 -0.13 -3.73 16 19 C -0.07 -1.36 10.06 22.30 0.22 -1.14 16 20 C -0.15 -2.27 9.96 22.02 0.22 -2.05 16 21 C -0.08 -1.21 10.01 22.30 0.22 -0.99 16 22 C -0.14 -2.62 9.89 22.37 0.22 -2.40 16 23 C 0.09 2.27 6.81 39.14 0.27 2.54 16 24 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.11 1.73 7.85 -2.38 -0.02 1.71 16 26 H 0.08 2.21 6.48 -2.39 -0.02 2.20 16 27 H 0.41 12.94 7.30 -92.71 -0.68 12.26 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.17 3.76 7.36 -2.91 -0.02 3.74 16 34 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.14 1.90 7.90 -2.91 -0.02 1.88 16 Total: -1.00 -68.75 318.85 3.24 -65.51 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.40 Total: 17.20 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.86 Total: -7.74 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -3.99 Total: -96.27 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.75 3.24 -65.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.906 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds