Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.35230 * 126.66018 * 90.00146 * 13 12 2 15 15 C 1.42293 * 103.93433 * 179.97438 * 14 13 12 16 16 C 1.48433 * 126.93294 * 180.02562 * 15 14 13 17 17 C 1.39318 * 120.12367 * 359.71705 * 16 15 14 18 18 C 1.38024 * 119.88145 * 179.77212 * 17 16 15 19 19 C 1.38324 * 120.11573 * 0.48893 * 18 17 16 20 20 C 1.38319 * 120.24098 * 359.78463 * 19 18 17 21 21 C 1.38020 * 120.11911 * 359.96299 * 20 19 18 22 22 N 1.30990 * 106.12846 * 359.97438 * 15 14 13 23 23 O 1.20908 * 111.41795 * 359.72806 * 22 15 14 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.07995 * 128.03510 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.05821 * 0.02738 * 17 16 15 34 34 H 1.08002 * 119.93947 * 180.27693 * 18 17 16 35 35 H 1.07998 * 119.87565 * 179.76884 * 19 18 17 36 36 H 1.08001 * 119.93740 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.05737 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 0.5194 -2.8327 -1.4253 15 6 0.6765 -4.1841 -1.0084 16 6 -0.2676 -5.3053 -1.2427 17 6 -1.4577 -5.0847 -1.9327 18 6 -2.3297 -6.1318 -2.1519 19 6 -2.0286 -7.3964 -1.6791 20 6 -0.8511 -7.6198 -0.9885 21 6 0.0304 -6.5809 -0.7683 22 7 1.8229 -4.2392 -0.3771 23 8 2.3672 -3.1598 -0.3553 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 -0.3017 -2.3973 -1.9753 33 1 -1.6955 -4.0969 -2.2990 34 1 -3.2504 -5.9628 -2.6906 35 1 -2.7155 -8.2122 -1.8496 36 1 -0.6211 -8.6090 -0.6212 37 1 0.9497 -6.7565 -0.2293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267019589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = 90.183548 kcal Electronic energy + Delta-G solvation = -19568.778398 eV Core-core repulsion = 16507.412327 eV Total energy + Delta-G solvation = -3061.366070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.68981 -39.26598 -36.93051 -34.34778 -32.94779 -31.75940 -31.12331 -30.37384 -27.49755 -26.97403 -24.28495 -23.91719 -23.04123 -21.95629 -20.80617 -19.89215 -17.43498 -17.33458 -16.59863 -16.32306 -15.74534 -15.01424 -14.85952 -14.56047 -14.20873 -14.01469 -13.69783 -13.43335 -13.21003 -13.18348 -12.50126 -12.02505 -11.73644 -11.51588 -11.43139 -11.24611 -10.99457 -10.89974 -10.76125 -10.71799 -10.54211 -9.97064 -9.36490 -9.21799 -9.18787 -8.62843 -8.48915 -7.44479 -6.08240 -4.09652 0.72819 1.16795 1.72378 2.51236 3.27276 3.29007 3.36782 3.41973 3.69599 3.99597 4.37932 4.42738 4.72696 4.81079 4.86182 4.96561 5.16748 5.22634 5.27154 5.28757 5.36343 5.51436 5.66610 5.79495 5.80957 5.90510 6.03650 6.07391 6.21404 6.24648 6.27871 6.35502 6.65397 6.70409 7.13546 7.19685 7.69933 7.93959 8.05361 8.39018 8.41546 8.97625 9.54926 11.02704 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036372 B = 0.003223 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.633065 B = 8684.792405 C = 8872.912357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.124 3.876 13 C 0.014 3.986 14 C -0.231 4.231 15 C 0.049 3.951 16 C -0.012 4.012 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.095 4.095 22 N -0.362 5.362 23 O 0.113 5.887 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.035 0.965 28 H -0.004 1.004 29 H 0.262 0.738 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 -18.689 -7.353 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.261 5.261 3 C 0.069 3.931 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C -0.006 4.006 13 C -0.050 4.050 14 C -0.254 4.254 15 C -0.107 4.107 16 C -0.013 4.013 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.114 4.114 22 N -0.064 5.064 23 O 0.044 5.956 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.186 0.814 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.196 -19.698 -6.326 21.905 hybrid contribution -1.055 1.444 -0.302 1.814 sum -8.251 -18.254 -6.628 21.101 Atomic orbital electron populations 1.22324 0.88403 0.99640 1.01310 1.62142 1.07528 1.18225 1.38190 1.19810 0.95675 0.80479 0.97144 1.21159 1.35000 0.96902 1.01597 0.91704 1.24979 0.95205 0.97302 0.97068 1.69958 1.38297 1.11468 1.34052 0.86425 0.78210 0.79273 0.83437 1.19625 1.20929 1.21095 1.20599 1.02320 0.83020 0.94632 1.24592 0.91616 0.94147 0.94661 1.22360 1.01300 0.92516 1.09195 1.21884 0.94150 0.94170 1.00528 1.17755 0.93098 0.90783 0.99635 1.21158 0.92900 0.99656 0.97811 1.21081 0.99580 0.92770 1.00392 1.21254 0.97041 0.97178 0.97942 1.21103 0.94456 0.98981 0.99359 1.21259 0.99800 0.91751 0.98613 1.74089 1.09675 1.03389 1.19288 1.84806 1.41071 1.12466 1.57233 0.96530 0.93418 0.90412 0.94730 0.98618 0.92882 0.91923 0.88596 0.81383 0.85425 0.85531 0.85868 0.85668 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.14 60.06 0.55 1.14 16 2 N -0.54 -11.11 4.74 -245.82 -1.17 -12.27 16 3 C 0.19 4.81 4.72 -4.97 -0.02 4.78 16 4 C -0.51 -13.93 8.52 -34.44 -0.29 -14.22 16 5 H 0.06 1.78 7.10 -52.48 -0.37 1.41 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.12 2.06 5.52 -4.98 -0.03 2.04 16 13 C 0.01 0.22 6.35 -35.38 -0.22 -0.01 16 14 C -0.23 -3.27 9.00 -39.10 -0.35 -3.62 16 15 C 0.05 0.73 7.06 -82.47 -0.58 0.15 16 16 C -0.01 -0.15 5.88 -104.89 -0.62 -0.77 16 17 C -0.10 -1.02 9.60 -39.26 -0.38 -1.39 16 18 C -0.12 -1.06 10.03 -39.63 -0.40 -1.46 16 19 C -0.12 -0.98 10.04 -39.52 -0.40 -1.37 16 20 C -0.12 -1.14 10.03 -39.63 -0.40 -1.53 16 21 C -0.10 -1.12 9.70 -39.26 -0.38 -1.50 16 22 N -0.36 -6.06 11.82 33.32 0.39 -5.67 16 23 O 0.11 1.93 11.18 17.11 0.19 2.13 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.79 6.12 -51.93 -0.32 0.47 16 26 H 0.08 1.58 6.86 -51.93 -0.36 1.22 16 27 H 0.03 0.91 7.93 -51.93 -0.41 0.50 16 28 H 0.00 -0.10 8.12 -51.93 -0.42 -0.53 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.10 1.55 7.93 -51.93 -0.41 1.14 16 32 H 0.17 1.94 7.58 -52.49 -0.40 1.55 16 33 H 0.13 1.16 7.23 -52.48 -0.38 0.78 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.52 7.89 -52.49 -0.41 1.11 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -30.45 318.45 -8.42 -38.87 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.73 Total: -2.54 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.62 Total: -16.31 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.04 Total: -43.27 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.19 Total: 2.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.45 -8.42 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267019589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.050 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds