Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.35230 * 126.66018 * 90.00146 * 13 12 2 15 15 C 1.42293 * 103.93433 * 179.97438 * 14 13 12 16 16 C 1.48433 * 126.93294 * 180.02562 * 15 14 13 17 17 C 1.39318 * 120.12367 * 359.71705 * 16 15 14 18 18 C 1.38024 * 119.88145 * 179.77212 * 17 16 15 19 19 C 1.38324 * 120.11573 * 0.48893 * 18 17 16 20 20 C 1.38319 * 120.24098 * 359.78463 * 19 18 17 21 21 C 1.38020 * 120.11911 * 359.96299 * 20 19 18 22 22 N 1.30990 * 106.12846 * 359.97438 * 15 14 13 23 23 O 1.20908 * 111.41795 * 359.72806 * 22 15 14 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.07995 * 128.03510 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.05821 * 0.02738 * 17 16 15 34 34 H 1.08002 * 119.93947 * 180.27693 * 18 17 16 35 35 H 1.07998 * 119.87565 * 179.76884 * 19 18 17 36 36 H 1.08001 * 119.93740 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.05737 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 0.5194 -2.8327 -1.4253 15 6 0.6765 -4.1841 -1.0084 16 6 -0.2676 -5.3053 -1.2427 17 6 -1.4577 -5.0847 -1.9327 18 6 -2.3297 -6.1318 -2.1519 19 6 -2.0286 -7.3964 -1.6791 20 6 -0.8511 -7.6198 -0.9885 21 6 0.0304 -6.5809 -0.7683 22 7 1.8229 -4.2392 -0.3771 23 8 2.3672 -3.1598 -0.3553 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 -0.3017 -2.3973 -1.9753 33 1 -1.6955 -4.0969 -2.2990 34 1 -3.2504 -5.9628 -2.6906 35 1 -2.7155 -8.2122 -1.8496 36 1 -0.6211 -8.6090 -0.6212 37 1 0.9497 -6.7565 -0.2293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267019589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = 72.428417 kcal Electronic energy + Delta-G solvation = -19569.548318 eV Core-core repulsion = 16507.412327 eV Total energy + Delta-G solvation = -3062.135991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.88456 -40.02565 -38.54002 -35.43670 -34.85440 -33.18921 -31.89910 -31.26849 -29.34212 -28.45765 -25.86801 -25.06011 -24.06166 -22.85874 -22.49428 -20.96689 -18.74464 -18.63292 -18.15398 -17.46493 -16.81278 -16.58917 -16.11188 -15.88948 -15.70320 -15.29855 -14.72425 -14.43641 -14.25534 -14.05324 -13.99763 -13.80187 -13.26176 -13.03167 -12.69173 -12.61317 -12.39526 -12.34305 -12.24968 -11.94651 -11.83178 -11.76167 -11.33728 -10.63383 -10.47957 -9.92525 -9.52256 -9.10704 -8.20283 -6.29232 -0.16104 0.43275 0.52751 1.41576 1.43279 1.49988 1.56002 2.06212 2.41682 2.90409 2.99526 3.13063 3.26771 3.46418 3.98247 4.02521 4.08592 4.13367 4.18416 4.32867 4.44156 4.53041 4.53831 4.59451 4.69709 4.78658 4.87364 5.03863 5.06585 5.09914 5.17551 5.29107 5.49913 5.52846 5.54856 5.64284 5.99672 6.02271 6.24097 6.52357 6.85615 7.20023 7.40098 8.90711 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036372 B = 0.003223 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.633065 B = 8684.792405 C = 8872.912357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.551 5.551 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.128 3.872 13 C 0.000 4.000 14 C -0.217 4.217 15 C 0.053 3.947 16 C -0.046 4.046 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.113 4.113 22 N -0.387 5.387 23 O 0.087 5.913 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.012 0.988 28 H -0.022 1.022 29 H 0.265 0.735 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.198 0.802 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.622 -20.023 -7.830 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.277 5.277 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.203 1.203 12 C -0.001 4.001 13 C -0.064 4.064 14 C -0.239 4.239 15 C -0.103 4.103 16 C -0.047 4.047 17 C -0.119 4.119 18 C -0.137 4.137 19 C -0.126 4.126 20 C -0.142 4.142 21 C -0.133 4.133 22 N -0.093 5.093 23 O 0.022 5.978 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.031 0.969 28 H -0.004 1.004 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.215 0.785 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.650 -21.031 -6.807 24.120 hybrid contribution -0.370 1.691 -0.222 1.745 sum -10.019 -19.340 -7.029 22.887 Atomic orbital electron populations 1.22272 0.87070 1.00918 1.00806 1.61959 1.08855 1.16027 1.40818 1.19442 0.94242 0.82544 0.95522 1.21466 1.34879 0.97419 1.02450 0.92221 1.25824 0.95042 0.98013 1.00448 1.70063 1.39261 1.11914 1.35954 0.85389 0.78039 0.78249 0.79267 1.19091 1.20536 1.20254 1.20556 1.02294 0.83160 0.94069 1.24475 0.92452 0.93637 0.95817 1.22698 1.01078 0.91963 1.08147 1.22370 0.93684 0.95242 0.99037 1.17935 0.94082 0.90543 1.02113 1.21405 0.92219 1.01067 0.97227 1.21488 1.00121 0.92320 0.99795 1.21702 0.96721 0.98090 0.96097 1.21398 0.94380 0.99267 0.99162 1.21328 1.00189 0.92447 0.99320 1.74085 1.10958 1.03367 1.20896 1.84774 1.41894 1.12888 1.58216 0.95456 0.91114 0.92440 0.96943 1.00412 0.92620 0.89718 0.88840 0.78511 0.84068 0.82529 0.82647 0.83511 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 9.14 127.69 1.17 2.54 16 2 N -0.55 -23.03 4.74 -931.65 -4.42 -27.45 16 3 C 0.21 10.61 4.72 85.56 0.40 11.01 16 4 C -0.52 -29.16 8.52 25.60 0.22 -28.95 16 5 H 0.06 3.31 7.10 -2.91 -0.02 3.29 16 6 C 0.01 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.13 4.26 5.52 85.55 0.47 4.74 16 13 C 0.00 -0.01 6.35 24.99 0.16 0.15 16 14 C -0.22 -5.84 9.00 22.58 0.20 -5.64 16 15 C 0.05 1.57 7.06 43.00 0.30 1.87 16 16 C -0.05 -1.13 5.88 -20.04 -0.12 -1.25 16 17 C -0.10 -1.86 9.60 22.48 0.22 -1.65 16 18 C -0.12 -1.66 10.03 22.24 0.22 -1.44 16 19 C -0.11 -1.42 10.04 22.31 0.22 -1.19 16 20 C -0.12 -2.06 10.03 22.24 0.22 -1.83 16 21 C -0.11 -2.61 9.70 22.48 0.22 -2.40 16 22 N -0.39 -13.26 11.82 -49.45 -0.58 -13.85 16 23 O 0.09 3.07 11.18 71.40 0.80 3.87 16 24 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 2.24 6.12 -2.39 -0.01 2.22 16 26 H 0.06 2.32 6.86 -2.39 -0.02 2.30 16 27 H 0.01 0.68 7.93 -2.38 -0.02 0.66 16 28 H -0.02 -1.17 8.12 -2.39 -0.02 -1.19 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 31 H 0.09 3.12 7.93 -2.39 -0.02 3.10 16 32 H 0.20 3.96 7.58 -2.91 -0.02 3.94 16 33 H 0.14 2.13 7.23 -2.91 -0.02 2.11 16 34 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.11 2.83 7.89 -2.91 -0.02 2.80 16 Total: -1.00 -66.79 318.45 3.55 -63.24 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.07 Total: 5.99 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.38 Total: -23.29 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.72 Total: -95.76 kcal Atomic # 8 Polarization: 3.07 SS G_CDS: 0.80 Total: 3.87 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.79 3.55 -63.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267019589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.671 kcal (2) G-P(sol) polarization free energy of solvation -66.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds