Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46994 * 2 1 4 4 C 1.46497 * 119.99983 * 73.74517 * 3 2 1 5 5 C 1.52999 * 109.47246 * 89.99838 * 4 3 2 6 6 C 1.47206 * 109.47265 * 179.97438 * 5 4 3 7 7 N 5.65196 * 105.49808 * 50.69009 * 2 1 3 8 8 C 1.34779 * 119.99806 * 253.73541 * 3 2 1 9 9 O 1.21546 * 119.99862 * 183.88275 * 8 3 2 10 10 C 1.47880 * 120.00045 * 3.89414 * 8 3 2 11 11 C 1.39923 * 120.02558 * 23.28763 * 10 8 3 12 12 C 1.38333 * 120.35703 * 179.74539 * 11 10 8 13 13 C 1.37751 * 120.41131 * 0.55489 * 12 11 10 14 14 C 1.40745 * 120.03985 * 359.70165 * 13 12 11 15 15 C 1.41441 * 120.17916 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99919 * 28.52539 * 15 14 13 17 17 C 1.39931 * 120.00210 * 208.52193 * 15 14 13 18 18 N 1.30823 * 120.00298 * 9.39462 * 17 15 14 19 19 Si 1.86802 * 120.00131 * 189.38966 * 17 15 14 20 20 H 1.48503 * 109.46877 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47292 * 120.00093 * 19 17 15 22 22 H 1.48503 * 109.47445 * 240.00476 * 19 17 15 23 23 C 1.39000 * 120.02547 * 203.56603 * 10 8 3 24 24 H 1.08995 * 109.46923 * 300.00152 * 1 2 3 25 25 H 1.09005 * 109.46774 * 59.99910 * 1 2 3 26 26 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46923 * 239.99848 * 2 1 3 28 28 H 1.09005 * 109.46774 * 120.00090 * 2 1 3 29 29 H 1.08998 * 109.47396 * 329.99621 * 4 3 2 30 30 H 1.09003 * 109.46791 * 209.99477 * 4 3 2 31 31 H 1.09000 * 109.47142 * 300.00044 * 5 4 3 32 32 H 1.08999 * 109.47602 * 59.99763 * 5 4 3 33 33 H 1.08001 * 119.82294 * 0.02562 * 11 10 8 34 34 H 1.07999 * 119.79344 * 180.27907 * 12 11 10 35 35 H 1.08000 * 119.97930 * 179.71762 * 13 12 11 36 36 H 0.96997 * 120.00582 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.19981 * 359.95151 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9277 2.1902 1.2180 5 6 3.2017 2.0102 2.0458 6 6 3.1109 2.8235 3.2694 7 7 3.0403 3.4504 4.2141 8 6 2.5512 1.9076 -1.1205 9 8 3.0204 3.0286 -1.1017 10 6 2.5646 1.1212 -2.3729 11 6 1.6415 0.0865 -2.5599 12 6 1.6445 -0.6500 -3.7308 13 6 2.5632 -0.3810 -4.7214 14 6 3.5030 0.6524 -4.5490 15 6 4.4473 0.9315 -5.5643 16 1 4.2073 0.7241 -6.5967 17 6 5.6925 1.4762 -5.2313 18 7 6.0569 1.5571 -3.9775 19 14 6.8345 2.0878 -6.5771 20 1 6.1925 1.8856 -7.9008 21 1 7.1076 3.5334 -6.3755 22 1 8.1111 1.3308 -6.5249 23 6 3.4981 1.4057 -3.3628 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.0658 1.8701 1.8034 30 1 1.8145 3.2404 0.9490 31 1 3.3150 0.9600 2.3148 32 1 4.0637 2.3302 1.4605 33 1 0.9197 -0.1355 -1.7877 34 1 0.9250 -1.4437 -3.8674 35 1 2.5623 -0.9634 -5.6309 36 1 6.9198 1.9351 -3.7465 37 1 4.2148 2.2010 -3.2211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267412031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = 34.127776 kcal Electronic energy + Delta-G solvation = -20304.582945 eV Core-core repulsion = 17240.786113 eV Total energy + Delta-G solvation = -3063.796831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93262 -37.32504 -36.73434 -35.86843 -33.84875 -32.52791 -30.11753 -29.81402 -29.25013 -25.58557 -24.55681 -23.33172 -21.37263 -21.10123 -18.82971 -17.73019 -17.61269 -16.17482 -16.05114 -15.34714 -15.10134 -14.84600 -14.66304 -13.96558 -13.49930 -13.32102 -13.23091 -12.79174 -12.66840 -12.55546 -12.41668 -12.31299 -11.86798 -11.72078 -11.63679 -11.22997 -11.13225 -11.08477 -10.92645 -10.47382 -10.25840 -10.05582 -9.62622 -9.30100 -9.01644 -8.50546 -7.65987 -7.47267 -6.78081 -4.47240 2.15885 2.62954 2.73371 2.76491 3.06673 3.09469 3.11224 3.26297 3.71586 3.90486 4.09337 4.58471 4.81880 4.97511 5.11100 5.29642 5.32011 5.37074 5.50778 5.63150 5.75577 5.83029 5.92008 6.02628 6.07820 6.23455 6.35566 6.63911 6.80010 6.95526 6.98183 7.18820 7.34297 7.48983 7.59317 7.69785 7.82526 7.95995 8.13893 8.47194 8.75927 8.78817 8.81979 10.15394 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.005222 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.342925 B = 5361.120856 C = 6602.034005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.066 3.934 3 N -0.614 5.614 4 C 0.124 3.876 5 C -0.047 4.047 6 C 0.218 3.782 7 N -0.445 5.445 8 C 0.568 3.432 9 O -0.542 6.542 10 C -0.130 4.130 11 C -0.246 4.246 12 C -0.103 4.103 13 C -0.206 4.206 14 C 0.098 3.902 15 C -0.459 4.459 16 H 0.080 0.920 17 C 0.071 3.929 18 N -0.797 5.797 19 Si 0.913 3.087 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.087 4.087 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.282 0.718 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -4.610 6.196 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.056 4.056 3 N -0.347 5.347 4 C -0.001 4.001 5 C -0.088 4.088 6 C -0.100 4.100 7 N -0.123 5.123 8 C 0.361 3.639 9 O -0.420 6.420 10 C -0.133 4.133 11 C -0.265 4.265 12 C -0.121 4.121 13 C -0.226 4.226 14 C 0.095 3.905 15 C -0.489 4.489 16 H 0.098 0.902 17 C -0.146 4.146 18 N -0.423 5.423 19 Si 0.737 3.263 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.107 4.107 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.766 -2.991 7.756 10.117 hybrid contribution 0.640 -0.105 -0.816 1.042 sum -5.126 -3.095 6.940 9.166 Atomic orbital electron populations 1.22256 0.96374 1.02292 1.02412 1.22665 0.94196 0.82960 1.05745 1.47796 1.62899 1.13919 1.10119 1.21144 0.95135 0.98048 0.85747 1.19773 1.02820 0.98448 0.87802 1.29091 0.93083 0.93607 0.94265 1.81203 1.08771 1.10150 1.12153 1.18995 0.75576 0.85937 0.83439 1.90704 1.45821 1.20038 1.85420 1.19436 1.00806 0.98941 0.94098 1.21491 1.04022 1.01197 0.99790 1.20512 0.98295 0.99053 0.94237 1.21198 1.01382 1.00492 0.99535 1.17619 0.91187 0.89216 0.92451 1.19630 0.97896 1.36437 0.94910 0.90178 1.25919 0.98955 0.93347 0.96359 1.69736 1.20848 1.33563 1.18122 0.86180 0.79562 0.79136 0.81396 1.18440 1.19665 1.19919 1.21711 0.96926 0.99272 0.92814 0.92701 0.91346 0.91477 0.84729 0.91818 0.90108 0.89295 0.87262 0.86578 0.85133 0.88851 0.88668 0.90676 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.06 37.16 0.34 -1.41 16 2 C 0.07 0.78 5.60 -4.04 -0.02 0.76 16 3 N -0.61 -8.85 2.52 -174.79 -0.44 -9.29 16 4 C 0.12 1.45 5.27 -4.04 -0.02 1.43 16 5 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 6 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 7 N -0.45 -6.55 18.54 42.15 0.78 -5.77 16 8 C 0.57 11.25 7.51 -12.31 -0.09 11.15 16 9 O -0.54 -12.40 16.19 5.33 0.09 -12.31 16 10 C -0.13 -2.82 5.59 -105.04 -0.59 -3.40 16 11 C -0.25 -4.64 7.51 -38.92 -0.29 -4.93 16 12 C -0.10 -2.01 10.01 -39.72 -0.40 -2.41 16 13 C -0.21 -4.62 9.78 -38.81 -0.38 -5.00 16 14 C 0.10 2.46 5.56 -106.87 -0.59 1.87 16 15 C -0.46 -11.68 9.07 -37.73 -0.34 -12.02 16 16 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 17 C 0.07 1.75 5.28 -17.35 -0.09 1.66 16 18 N -0.80 -20.28 10.75 55.55 0.60 -19.68 16 19 Si 0.91 18.38 29.57 -169.99 -5.03 13.35 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.09 -2.19 8.20 -38.44 -0.32 -2.51 16 24 H 0.05 0.48 7.34 -51.93 -0.38 0.10 16 25 H 0.07 0.80 7.04 -51.93 -0.37 0.43 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.14 1.88 3.98 -52.82 -0.21 1.67 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.73 7.24 -51.93 -0.38 0.36 16 30 H 0.09 1.19 7.48 -51.93 -0.39 0.80 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.13 1.99 2.42 -52.49 -0.13 1.86 16 34 H 0.09 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.14 3.72 5.91 -52.49 -0.31 3.41 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -29.32 315.01 -6.79 -36.12 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.24 Total: 5.99 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.30 Total: -13.15 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.94 Total: -34.74 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.32 -6.79 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267412031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.244 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds