Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46994 * 2 1 4 4 C 1.46497 * 119.99983 * 73.74517 * 3 2 1 5 5 C 1.52999 * 109.47246 * 89.99838 * 4 3 2 6 6 C 1.47206 * 109.47265 * 179.97438 * 5 4 3 7 7 N 5.65196 * 105.49808 * 50.69009 * 2 1 3 8 8 C 1.34779 * 119.99806 * 253.73541 * 3 2 1 9 9 O 1.21546 * 119.99862 * 183.88275 * 8 3 2 10 10 C 1.47880 * 120.00045 * 3.89414 * 8 3 2 11 11 C 1.39923 * 120.02558 * 23.28763 * 10 8 3 12 12 C 1.38333 * 120.35703 * 179.74539 * 11 10 8 13 13 C 1.37751 * 120.41131 * 0.55489 * 12 11 10 14 14 C 1.40745 * 120.03985 * 359.70165 * 13 12 11 15 15 C 1.41441 * 120.17916 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99919 * 28.52539 * 15 14 13 17 17 C 1.39931 * 120.00210 * 208.52193 * 15 14 13 18 18 N 1.30823 * 120.00298 * 9.39462 * 17 15 14 19 19 Si 1.86802 * 120.00131 * 189.38966 * 17 15 14 20 20 H 1.48503 * 109.46877 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47292 * 120.00093 * 19 17 15 22 22 H 1.48503 * 109.47445 * 240.00476 * 19 17 15 23 23 C 1.39000 * 120.02547 * 203.56603 * 10 8 3 24 24 H 1.08995 * 109.46923 * 300.00152 * 1 2 3 25 25 H 1.09005 * 109.46774 * 59.99910 * 1 2 3 26 26 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46923 * 239.99848 * 2 1 3 28 28 H 1.09005 * 109.46774 * 120.00090 * 2 1 3 29 29 H 1.08998 * 109.47396 * 329.99621 * 4 3 2 30 30 H 1.09003 * 109.46791 * 209.99477 * 4 3 2 31 31 H 1.09000 * 109.47142 * 300.00044 * 5 4 3 32 32 H 1.08999 * 109.47602 * 59.99763 * 5 4 3 33 33 H 1.08001 * 119.82294 * 0.02562 * 11 10 8 34 34 H 1.07999 * 119.79344 * 180.27907 * 12 11 10 35 35 H 1.08000 * 119.97930 * 179.71762 * 13 12 11 36 36 H 0.96997 * 120.00582 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.19981 * 359.95151 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9277 2.1902 1.2180 5 6 3.2017 2.0102 2.0458 6 6 3.1109 2.8235 3.2694 7 7 3.0403 3.4504 4.2141 8 6 2.5512 1.9076 -1.1205 9 8 3.0204 3.0286 -1.1017 10 6 2.5646 1.1212 -2.3729 11 6 1.6415 0.0865 -2.5599 12 6 1.6445 -0.6500 -3.7308 13 6 2.5632 -0.3810 -4.7214 14 6 3.5030 0.6524 -4.5490 15 6 4.4473 0.9315 -5.5643 16 1 4.2073 0.7241 -6.5967 17 6 5.6925 1.4762 -5.2313 18 7 6.0569 1.5571 -3.9775 19 14 6.8345 2.0878 -6.5771 20 1 6.1925 1.8856 -7.9008 21 1 7.1076 3.5334 -6.3755 22 1 8.1111 1.3308 -6.5249 23 6 3.4981 1.4057 -3.3628 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.0658 1.8701 1.8034 30 1 1.8145 3.2404 0.9490 31 1 3.3150 0.9600 2.3148 32 1 4.0637 2.3302 1.4605 33 1 0.9197 -0.1355 -1.7877 34 1 0.9250 -1.4437 -3.8674 35 1 2.5623 -0.9634 -5.6309 36 1 6.9198 1.9351 -3.7465 37 1 4.2148 2.2010 -3.2211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267412031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = 17.652919 kcal Electronic energy + Delta-G solvation = -20305.297348 eV Core-core repulsion = 17240.786113 eV Total energy + Delta-G solvation = -3064.511235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34783 -38.89336 -37.95103 -37.15862 -35.53595 -33.67552 -31.59728 -31.36484 -30.60220 -27.29849 -25.80861 -24.43922 -22.80651 -22.78641 -20.27285 -19.21760 -18.70492 -17.58604 -17.58065 -16.74922 -16.66947 -16.02278 -15.86263 -15.37055 -14.90843 -14.76124 -14.59835 -14.27138 -14.08704 -13.68320 -13.57129 -13.47186 -13.33522 -12.86617 -12.79068 -12.73140 -12.63813 -12.43979 -12.02926 -11.88933 -11.79125 -11.69480 -11.26265 -11.04547 -10.57315 -9.75560 -9.33494 -9.21423 -8.56685 -6.35493 0.47687 1.05803 1.38862 1.48184 1.53310 1.60655 1.75502 2.08754 2.13663 2.22623 2.82971 3.10501 3.71052 3.78726 4.04161 4.11856 4.24283 4.45575 4.51125 4.52859 4.67264 4.77662 4.81680 4.95761 4.97986 5.06040 5.13663 5.18073 5.27339 5.38638 5.51684 5.58929 5.70271 5.91763 6.00726 6.12756 6.34501 6.43920 6.52329 6.68551 6.94802 7.00375 7.30770 8.38504 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.005222 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.342925 B = 5361.120856 C = 6602.034005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.058 3.942 3 N -0.598 5.598 4 C 0.121 3.879 5 C -0.037 4.037 6 C 0.244 3.756 7 N -0.490 5.490 8 C 0.562 3.438 9 O -0.586 6.586 10 C -0.140 4.140 11 C -0.216 4.216 12 C -0.103 4.103 13 C -0.212 4.212 14 C 0.064 3.936 15 C -0.499 4.499 16 H 0.078 0.922 17 C 0.029 3.971 18 N -0.836 5.836 19 Si 0.981 3.019 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.265 1.265 23 C -0.125 4.125 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.177 0.823 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.284 0.716 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -6.829 7.636 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.063 4.063 3 N -0.329 5.329 4 C -0.002 4.002 5 C -0.078 4.078 6 C -0.073 4.073 7 N -0.168 5.168 8 C 0.353 3.647 9 O -0.468 6.468 10 C -0.143 4.143 11 C -0.234 4.234 12 C -0.121 4.121 13 C -0.232 4.232 14 C 0.062 3.938 15 C -0.530 4.530 16 H 0.096 0.904 17 C -0.184 4.184 18 N -0.463 5.463 19 Si 0.802 3.198 20 H -0.178 1.178 21 H -0.198 1.198 22 H -0.189 1.189 23 C -0.145 4.145 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.117 0.883 33 H 0.193 0.807 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.962 -5.255 9.226 13.272 hybrid contribution 1.097 0.464 -1.109 1.627 sum -6.866 -4.792 8.117 11.661 Atomic orbital electron populations 1.22248 0.94236 1.04121 1.02521 1.22856 0.95822 0.80980 1.06624 1.47754 1.60816 1.15105 1.09225 1.21349 0.97257 0.96768 0.84873 1.19767 1.01417 1.00123 0.86494 1.29225 0.91731 0.92565 0.93793 1.81240 1.10180 1.11549 1.13817 1.18830 0.76065 0.85286 0.84472 1.90680 1.48005 1.21873 1.86213 1.19765 1.00366 0.99775 0.94430 1.22118 1.02658 0.98376 1.00251 1.21015 0.98041 0.99825 0.93220 1.21485 1.01162 0.99716 1.00800 1.17932 0.92482 0.90570 0.92862 1.19866 0.99131 1.38923 0.95042 0.90358 1.26724 1.00160 0.93115 0.98423 1.69844 1.21376 1.35142 1.19929 0.85167 0.77665 0.78295 0.78657 1.17797 1.19750 1.18942 1.21488 0.98472 0.99786 0.94774 0.90815 0.93096 0.88782 0.87035 0.87751 0.86016 0.91440 0.83583 0.88294 0.80657 0.84297 0.87738 0.90597 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.06 71.98 0.65 -1.80 16 2 C 0.06 1.08 5.60 86.38 0.48 1.56 16 3 N -0.60 -15.65 2.52 -825.19 -2.08 -17.72 16 4 C 0.12 2.48 5.27 86.38 0.46 2.94 16 5 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 6 C 0.24 5.45 15.43 89.44 1.38 6.83 16 7 N -0.49 -13.82 18.54 20.01 0.37 -13.45 16 8 C 0.56 22.27 7.51 86.80 0.65 22.92 16 9 O -0.59 -27.96 16.19 -3.86 -0.06 -28.02 16 10 C -0.14 -6.14 5.59 -20.13 -0.11 -6.25 16 11 C -0.22 -7.61 7.51 22.70 0.17 -7.44 16 12 C -0.10 -3.76 10.01 22.18 0.22 -3.53 16 13 C -0.21 -9.46 9.78 22.77 0.22 -9.24 16 14 C 0.06 3.35 5.56 -21.32 -0.12 3.23 16 15 C -0.50 -26.85 9.07 23.47 0.21 -26.64 16 16 H 0.08 4.02 7.86 -2.91 -0.02 4.00 16 17 C 0.03 1.48 5.28 85.25 0.45 1.93 16 18 N -0.84 -45.40 10.75 21.82 0.23 -45.17 16 19 Si 0.98 39.43 29.57 68.60 2.03 41.45 16 20 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.12 -6.63 8.20 23.01 0.19 -6.44 16 24 H 0.07 0.83 7.34 -2.39 -0.02 0.82 16 25 H 0.05 0.93 7.04 -2.38 -0.02 0.91 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 2.64 3.98 -3.22 -0.01 2.63 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.12 1.57 7.24 -2.39 -0.02 1.55 16 30 H 0.07 1.73 7.48 -2.39 -0.02 1.71 16 31 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.18 4.56 2.42 -2.91 -0.01 4.56 16 34 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 37 H 0.10 5.91 5.91 -2.91 -0.02 5.90 16 Total: -1.00 -71.01 315.01 6.62 -64.38 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.10 Total: 20.95 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 5.03 Total: -22.43 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.47 Total: -76.34 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.06 Total: -28.02 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Total: -71.01 6.62 -64.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267412031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.034 kcal (2) G-P(sol) polarization free energy of solvation -71.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds