Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.41004 * 126.70744 * 94.99955 * 13 12 2 15 15 C 1.36825 * 103.88784 * 179.97438 * 14 13 12 16 16 C 1.47834 * 126.92915 * 180.02562 * 15 14 13 17 17 C 1.39565 * 120.14302 * 359.71495 * 16 15 14 18 18 C 1.37962 * 119.85301 * 179.77214 * 17 16 15 19 19 C 1.38362 * 120.14547 * 0.51169 * 18 17 16 20 20 C 1.38349 * 120.28516 * 359.74466 * 19 18 17 21 21 C 1.37963 * 120.15091 * 359.97438 * 20 19 18 22 22 O 1.34504 * 106.14529 * 359.97438 * 15 14 13 23 23 N 1.20901 * 111.44767 * 359.74845 * 22 15 14 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.08008 * 128.05489 * 359.97034 * 14 13 12 33 33 H 1.08004 * 120.07387 * 0.02892 * 17 16 15 34 34 H 1.07999 * 119.92755 * 180.27943 * 18 17 16 35 35 H 1.07996 * 119.85479 * 179.76691 * 19 18 17 36 36 H 1.08004 * 119.92612 * 180.02562 * 20 19 18 37 37 H 1.07993 * 120.07516 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 0.5214 -2.8814 -1.5267 15 6 0.6513 -4.1702 -1.0861 16 6 -0.2549 -5.3025 -1.3727 17 6 -1.3872 -5.1106 -2.1658 18 6 -2.2263 -6.1725 -2.4334 19 6 -1.9531 -7.4233 -1.9087 20 6 -0.8353 -7.6190 -1.1174 21 6 0.0151 -6.5668 -0.8469 22 8 1.7704 -4.1996 -0.3405 23 7 2.3007 -3.1140 -0.2962 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 -0.2549 -2.4669 -2.1529 33 1 -1.6038 -4.1338 -2.5726 34 1 -3.1004 -6.0263 -3.0506 35 1 -2.6152 -8.2504 -2.1181 36 1 -0.6274 -8.5979 -0.7112 37 1 0.8876 -6.7211 -0.2295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267907520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = 91.043075 kcal Electronic energy + Delta-G solvation = -19558.170425 eV Core-core repulsion = 16496.841626 eV Total energy + Delta-G solvation = -3061.328799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.70258 -39.32596 -36.92983 -33.94798 -33.19604 -32.30348 -31.26081 -29.55932 -27.83195 -26.93851 -24.28485 -23.82669 -23.08406 -22.02208 -20.86577 -19.63318 -17.92674 -17.42394 -16.48481 -16.32129 -15.75064 -15.13263 -14.88905 -14.40150 -14.18190 -13.97933 -13.78345 -13.40698 -13.31165 -13.21176 -12.23174 -12.01244 -11.90645 -11.48667 -11.38705 -11.25421 -10.94582 -10.89167 -10.65639 -10.53763 -10.31726 -9.99496 -9.79056 -9.28844 -9.23824 -8.45580 -8.44996 -7.32904 -6.04147 -4.05323 0.48302 1.07676 1.95789 2.45267 3.04957 3.31032 3.38374 3.43888 3.55431 4.32672 4.38963 4.44788 4.62105 4.66981 4.77999 5.01789 5.08626 5.16142 5.21917 5.32254 5.38338 5.47334 5.65250 5.70748 5.88004 5.98239 6.10188 6.13325 6.17007 6.18086 6.23883 6.31186 6.59419 6.69929 7.21924 7.27094 7.76496 8.02535 8.13570 8.46962 8.49968 9.02089 9.58887 11.06908 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037880 B = 0.003185 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.006079 B = 8789.035097 C = 8921.732460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.126 3.874 13 C 0.044 3.956 14 C -0.207 4.207 15 C -0.008 4.008 16 C -0.012 4.012 17 C -0.093 4.093 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.097 4.097 22 O 0.105 5.895 23 N -0.344 5.344 24 H 0.014 0.986 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.032 0.968 28 H -0.006 1.006 29 H 0.261 0.739 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.169 0.831 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 -21.509 -7.907 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.260 5.260 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C -0.003 4.003 13 C -0.115 4.115 14 C -0.228 4.228 15 C -0.071 4.071 16 C -0.013 4.013 17 C -0.112 4.112 18 C -0.136 4.136 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.116 4.116 22 O 0.036 5.964 23 N -0.046 5.046 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.187 0.813 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.966 -21.478 -6.778 23.889 hybrid contribution -1.116 1.220 -0.380 1.696 sum -9.082 -20.258 -7.158 23.326 Atomic orbital electron populations 1.22249 0.88639 0.99236 1.01048 1.62103 1.07244 1.17983 1.38650 1.19785 0.95562 0.80823 0.96982 1.21172 1.34824 0.96867 1.01611 0.91780 1.24988 0.95262 0.97315 0.97066 1.69966 1.38413 1.11421 1.34062 0.86425 0.78185 0.79252 0.83476 1.19644 1.20949 1.21091 1.20387 1.01282 0.84655 0.93965 1.23511 0.93073 0.98321 0.96566 1.22593 1.01687 0.92256 1.06270 1.22423 0.91294 0.95291 0.98136 1.17655 0.93638 0.90318 0.99722 1.21142 0.93114 0.99745 0.97202 1.21073 0.99600 0.92656 1.00259 1.21308 0.97289 0.97348 0.97183 1.21111 0.94825 0.98983 0.98719 1.21338 0.99809 0.91648 0.98781 1.84933 1.30296 1.27691 1.53503 1.73840 1.20059 0.91381 1.19319 0.96702 0.93766 0.90641 0.94978 0.98780 0.92936 0.93354 0.89439 0.81306 0.85276 0.85357 0.85741 0.85450 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.17 60.06 0.55 1.29 16 2 N -0.53 -12.01 4.74 -245.82 -1.17 -13.18 16 3 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 4 C -0.51 -14.45 8.52 -34.44 -0.29 -14.75 16 5 H 0.06 1.83 7.10 -52.48 -0.37 1.46 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.13 2.39 5.55 -4.98 -0.03 2.36 16 13 C 0.04 0.76 6.00 -82.21 -0.49 0.27 16 14 C -0.21 -2.90 9.44 -39.05 -0.37 -3.27 16 15 C -0.01 -0.11 7.16 -36.17 -0.26 -0.37 16 16 C -0.01 -0.13 5.87 -104.98 -0.62 -0.75 16 17 C -0.09 -0.85 9.59 -39.19 -0.38 -1.23 16 18 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 19 C -0.11 -0.79 10.04 -39.49 -0.40 -1.19 16 20 C -0.12 -0.91 10.03 -39.64 -0.40 -1.30 16 21 C -0.10 -0.93 9.74 -39.19 -0.38 -1.31 16 22 O 0.11 1.66 11.04 15.93 0.18 1.84 16 23 N -0.34 -6.30 12.05 33.51 0.40 -5.90 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.78 6.36 -51.93 -0.33 0.45 16 26 H 0.07 1.61 6.86 -51.93 -0.36 1.26 16 27 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 28 H -0.01 -0.15 8.12 -51.93 -0.42 -0.58 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.09 1.69 7.93 -51.93 -0.41 1.28 16 32 H 0.17 1.90 7.47 -52.48 -0.39 1.51 16 33 H 0.13 1.01 7.16 -52.48 -0.38 0.63 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.13 1.16 7.96 -52.49 -0.42 0.75 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -32.12 318.94 -8.38 -40.50 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.74 Total: -3.84 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -3.58 Total: -14.98 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.03 Total: -45.21 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.18 Total: 1.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.12 -8.38 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267907520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.542 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds